mRNA_Ecto-sp13_S_contig20451.6759.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20451.6759.1
Unique NamemRNA_Ecto-sp13_S_contig20451.6759.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20451.6759.1 vs. uniprot
Match: D8LDD0_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDD0_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 2.700e-80
Identity = 144/192 (75.00%), Postives = 146/192 (76.04%), Query Frame = 1 
Query:    1 YNEVAPMGLTFDLANPLAVVSEVTAGGLSDRAGVKVGDHLVRVNERDTSEMKPTAALKVLQRAVWPRVLTFSVPESLVVEGSDEPLLLGLVVTEPEIVRGEYLMQAPKDWGGLRGASEEGVTQPSWSCEPRSMALSDPPPACQRNLRLLSGGVQVGDGGKPVIALVKRGVCTFVEKAKNVQVAVLNAAADTA 576
            Y EVAPMGLTFDLAN LAVVSEVTAGGLSD AGVK+GDHLVRVNERDTSEMKPTAALKV                                       RGEYLMQAPKDWGGLRGASEE V QPSWSCEPRSMALSDPPPACQRNLRLLSGGVQVGDG +PVIALVKRGVCTFVEKAKNVQVAVLNA ADTA
Sbjct:  335 YKEVAPMGLTFDLANLLAVVSEVTAGGLSDIAGVKIGDHLVRVNERDTSEMKPTAALKV---------------------------------------RGEYLMQAPKDWGGLRGASEEDVAQPSWSCEPRSMALSDPPPACQRNLRLLSGGVQVGDGREPVIALVKRGVCTFVEKAKNVQVAVLNAVADTA 487
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20451.6759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDD0_ECTSI2.700e-8075.00PA domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20451contigEcto-sp13_S_contig20451:37..3122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score257.7
Seed ortholog evalue5.8e-66
Seed eggNOG ortholog2880.D8LDD0
Model size789
KEGG koko:K09597
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG2442@2759,KOG2443@1
Cds size771
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20451.6759.1prot_Ecto-sp13_S_contig20451.6759.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20451 55..3122 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463025.2897809-UTR-Ecto-sp13_S_contig20451:36..541681463025.2897809-UTR-Ecto-sp13_S_contig20451:36..54Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20451 37..54 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463025.3007061-CDS-Ecto-sp13_S_contig20451:54..1561681463025.3007061-CDS-Ecto-sp13_S_contig20451:54..156Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20451 55..156 +
1681463025.3104868-CDS-Ecto-sp13_S_contig20451:696..7501681463025.3104868-CDS-Ecto-sp13_S_contig20451:696..750Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20451 697..750 +
1681463025.3208644-CDS-Ecto-sp13_S_contig20451:1419..15361681463025.3208644-CDS-Ecto-sp13_S_contig20451:1419..1536Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20451 1420..1536 +
1681463025.3309596-CDS-Ecto-sp13_S_contig20451:1991..21621681463025.3309596-CDS-Ecto-sp13_S_contig20451:1991..2162Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20451 1992..2162 +
1681463025.3427885-CDS-Ecto-sp13_S_contig20451:2795..31221681463025.3427885-CDS-Ecto-sp13_S_contig20451:2795..3122Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20451 2796..3122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20451.6759.1

>prot_Ecto-sp13_S_contig20451.6759.1 ID=prot_Ecto-sp13_S_contig20451.6759.1|Name=mRNA_Ecto-sp13_S_contig20451.6759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=257bp
MGLTFDLANPLAVVSEVTAGGLSDRAGVKVGDHLVRVNERDTSEMKPTAA
LKVLQRAVWPRVLTFSVPESLVVEGSDEPLLLGLVVTEPEIVRGEYLMQA
PKDWGGLRGASEEGVTQPSWSCEPRSMALSDPPPACQRNLRLLSGGVQVG
DGGKPVIALVKRGVCTFVEKAKNVQVAVLNAAADTAAPPQDTTVAAGEDV
ITSTKIVDSAAAAAAAAAATGSVSSRDSGSGAGGASGAAVVGGGMVLLNG
DDALADM
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mRNA from alignment at Ecto-sp13_S_contig20451:37..3122+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20451.6759.1 ID=mRNA_Ecto-sp13_S_contig20451.6759.1|Name=mRNA_Ecto-sp13_S_contig20451.6759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3086bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20451:37..3122+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACAACGAAGTGGCGCCAATGGGACTGACGTTCGACCTCGCTAACCCTCT
CGCTGTAGTCAGCGAAGTAACCGCAGGCGGGTTGTCCGACAGAGCCGGCG
TCAAGGTCGGAGATCACTTGGTGAGACCCCCCACCTGCTTCAGGCCGAAA
ACGAAGCACGGATGCACGATGGCGGAGTCGTACAAAGCTGGCCCATTGCG
AACAACAATTGCAACAATCGTTTGGGAAAAACAAGACGCATTGACGTACG
TGCAGATTGTTTCAGATGGCAGGAATCTGTTCTGGGGCAACGCCGGAGAG
GCTTGCTGTTCTCGGCGGTAAGTAATTATTGCGCAATCAGTCGTCAAGGG
GTAACAAAATACTGTTCGGGGGAGACACCTCCGTCTTCCACCATGCATCG
GTACACCAAAACTATCTCTCAAAGGAGAGAAGGGAGGCACTCAAACGCCG
CATCAGGCGAGAGAGGAAACCTTCAACCCACGGAGGAACCAACGCGGATT
GCATGTTAATATCGGCTGGTCAGCTATTCAGGAGGCCCTGCGGACGATAC
GACCTCTCCTGTTGACCCATGCGCGATTCCTTCGTGTGCCCTGTTCGACC
CCCTAGTACACCCTCACGCAGAAGAGAGCGTCTGCGCAATGTTGCACCTG
TGAATGACAGGTACGAGTGAACGAGCGAGACACGTCGGAGATGAAACCGA
CCGCGGCTCTTAAGGTGCGTGCTGTCCCCAGCGCTCTGGTCGGCTGTTGT
TGGGCACGCCAACCATATAAACGCGTTGACAGTTTGGGGTAGCTGCTACC
CACGAGGGCGTTGTTCTTGTTGGGGTTCTATGTGACGGCAAGAAATATAT
ATTCAGCGTGCGTTATAGTCTATGTAGTTTGTAGATCTACCATTCAAGAA
GCCGAAGAGGGCGGACGGTGCGCAAGATACCTTGGGCATGCAGTGGGATC
GACCATGGTCGGAAACCATATGCTGGGGAGCCCACTGCAAAGATCTAGTC
CCGCTTTTGCAGCGAGGGACGTACGCATGAGTGCATGGCCTACACTTGAC
GTACCAATGACGTTCGTACAGGAGAAACAAGAGATCCAGTGGTGCTGGGT
TTGCGTGTCAAAAGACGCGAAAATGCGAACGTTACGGCTGCCGTGAGAAG
ATACATCAATCATAGGCCGGTCTTTTACTAGCGATCCCTTCGCCGTTCGC
CATTGTTCCCCGTATGGTGGACACTGCCAGGCCTCGCCCCAGGTCTTGAA
CCTACTCATCCCAGAATTTGGCGCCCGAACTGAGAAATAAAACAAAAGTC
GGGAATACACCCCATCTCACACGCTTTTCGCCATCCCTTTCCGTTTTGTG
GCATTGTGTATTGTCGTGGAAACCGGGAGGCAGGTGCTGCAGCGAGCGGT
GTGGCCGAGGGTGCTGACCTTCTCCGTCCCAGAAAGCTTGGTGGTTGAGG
GATCGGACGAGCCCCTCCTGCTTGGCCTCGTGGTCACTGAACCAGAGATT
GTGGGTCCTGACGTGTATAGGCGCACGTGCTTTGTTGTTTGTCTGCTGCA
ATCTGAAGCATTTTTTCAGCTCATCGTGCCTCCTATCATAACGAATCCCG
CAAGTTCCTGCATTTAAATATCTCTACTTCAGCTAGAAGTACGTTTCAAT
CCTTTTTTTTCTGTCTTGTTCATGGTTTCTGATCTCCTGGGCTTTTCGCT
TACTGCGTCGCAAAGTTCAATGCTCTGGGAAAATGCAACTGAAAGAATTT
CCATCAAGCCGAGTCTTGATCGCGTTCTAACTGCGCCACAGTTGTTCGAC
ATTACACGGAACAGAGAGGCCCCGCACTCCCCTCAGCAACTTCACTCGCT
CGTGGAGCGCATCGCGAATGGCAACCATCTGGATGACTCGTACATGAGCT
TCTGGCCGCCCAGTCACTCCCCCCCCCCACGCGCGCCTTCCCCCTGCAAC
TTTAGGTGCGCGGAGAGTACCTGATGCAAGCCCCAAAAGACTGGGGGGGT
CTGCGCGGTGCTAGTGAGGAGGGTGTAACACAGCCGTCGTGGTCTTGCGA
GCCTCGTTCGATGGCTCTATCCGACCCCCCTCCGGCATGCCAGCGCAATC
TCAGGCTGCTGAGCGGGGGAGTTCAGGTGTGCGCGGGGCGACGGCGCGGC
AGAGTGCCGCTCAAGATCATAGATGAGTTGTCTGTACCTGACATGTTTCA
ACGATTGCCTTCGACTGACATTTTTTCAACGAGTACAAATCTGTTGCGTC
GTCGAGACCGATGGTTACGAGAGTACCTACCGTAGCGGTTTCGTAGAATG
GCTCGTTGGCGGTAGTTACGGCCAACCGTTTGTAAAGGATACTGTAAGCA
CTTTCGGGATGAACCGCGAAATGACCCGTGCTTCCAATAGGGCTACCGTT
GAGCTTTCGTAAGTGGCTTGGAGCGGAGAAGGAAAGTAATTGCAGATGCG
AATGTGCCCAAAGTCTCCACTCGAAAAGCATGCCTCCGTAGTTTGTGGCA
ATACTTCCGTTTTCCGGAAATCCCCCCGCCCACAGAAACTCCCATCTGAA
CATGTGGTTTTGCTCGCTGTTACAGTCGGACCCCTTGAAGTTCTCGCTCT
GAAGTCAACAAGCTACCAACATGGTCTTTAGGCTCATCAAGCGTCAAACC
CGCGAAATAATTCAAGCTTGGGTCGTATGACAATCGCCAAACCCGTGACA
TGAAACAAACTCGGTGTTGTGACAATGGTTTCCGTTTTCGGCGTGCCCCT
TCCGATAAGGTCGGTGATGGAGGAAAACCGGTGATCGCTCTCGTCAAGCG
CGGGGTTTGCACCTTCGTGGAGAAGGCCAAGAACGTCCAAGTCGCCGTCC
TCAACGCCGCCGCTGACACAGCCGCGCCTCCGCAAGACACGACCGTTGCC
GCGGGAGAAGACGTTATCACCAGCACCAAGATCGTAGACTCCGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTACAGGCAGCGTGTCTTCGCGGGATAGTG
GCAGCGGCGCTGGAGGCGCGAGCGGGGCAGCGGTGGTCGGGGGCGGGATG
GTGCTGCTGAACGGAGACGATGCTCTGGCGGACATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20451:37..3122+

>mRNA_Ecto-sp13_S_contig20451.6759.1 ID=mRNA_Ecto-sp13_S_contig20451.6759.1|Name=mRNA_Ecto-sp13_S_contig20451.6759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20451:37..3122+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGACTGACGTTCGACCTCGCTAACCCTCTCGCTGTAGTCAGCGAAGT
AACCGCAGGCGGGTTGTCCGACAGAGCCGGCGTCAAGGTCGGAGATCACT
TGGTACGAGTGAACGAGCGAGACACGTCGGAGATGAAACCGACCGCGGCT
CTTAAGGTGCTGCAGCGAGCGGTGTGGCCGAGGGTGCTGACCTTCTCCGT
CCCAGAAAGCTTGGTGGTTGAGGGATCGGACGAGCCCCTCCTGCTTGGCC
TCGTGGTCACTGAACCAGAGATTGTGCGCGGAGAGTACCTGATGCAAGCC
CCAAAAGACTGGGGGGGTCTGCGCGGTGCTAGTGAGGAGGGTGTAACACA
GCCGTCGTGGTCTTGCGAGCCTCGTTCGATGGCTCTATCCGACCCCCCTC
CGGCATGCCAGCGCAATCTCAGGCTGCTGAGCGGGGGAGTTCAGGTCGGT
GATGGAGGAAAACCGGTGATCGCTCTCGTCAAGCGCGGGGTTTGCACCTT
CGTGGAGAAGGCCAAGAACGTCCAAGTCGCCGTCCTCAACGCCGCCGCTG
ACACAGCCGCGCCTCCGCAAGACACGACCGTTGCCGCGGGAGAAGACGTT
ATCACCAGCACCAAGATCGTAGACTCCGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTACAGGCAGCGTGTCTTCGCGGGATAGTGGCAGCGGCGCTGGAG
GCGCGAGCGGGGCAGCGGTGGTCGGGGGCGGGATGGTGCTGCTGAACGGA
GACGATGCTCTGGCGGACATG
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