mRNA_Ecto-sp13_S_contig20449.6756.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20449.6756.1
Unique NamemRNA_Ecto-sp13_S_contig20449.6756.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20449.6756.1 vs. uniprot
Match: D7G576_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G576_ECTSI)

HSP 1 Score: 400 bits (1028), Expect = 3.820e-125
Identity = 210/229 (91.70%), Postives = 219/229 (95.63%), Query Frame = 2 
Query:    2 SRDRLGMSRDGARAAFVGAFFEMVAPNIQEVSVAVEALKDARKGVPKAMPATAFSSTGPLLGNSGGGAMDDVATPALADCDESAVVEQSVAAVPKPRNGEGLGHAEKLDMRADEIMGRVLRLASLCERAGASKELEVVLRATTTGRSDPLYSEGIGQAVGSKPVLSVYTFFLEEAFSPRRDSLATDDPVLQKRDSLALALGLSEARTINVHRGASSRLYLDFLHGKLER 688
            SRDRLGMS+DGARAAFVGAFFE+VAPNIQEVSVA+EALKDARKG+PKAMPATAFSS  PLL NSGGGAMDDV TPALADCD SAV EQSVAAV KPRNGEGLGHAE+L MRADEIMGRVLRLASLCERAGASKELEVVLRA+TTGRSDPLYSEG+GQAVGSKP LSVYTFFLEEAFSPRRDSLATDDPVLQKRDSLALALGLS+ARTI+VHRG SSRLYLDFLHGKLER
Sbjct:  772 SRDRLGMSKDGARAAFVGAFFEVVAPNIQEVSVAIEALKDARKGMPKAMPATAFSSASPLLVNSGGGAMDDVTTPALADCDGSAVGEQSVAAVAKPRNGEGLGHAEELGMRADEIMGRVLRLASLCERAGASKELEVVLRASTTGRSDPLYSEGVGQAVGSKPALSVYTFFLEEAFSPRRDSLATDDPVLQKRDSLALALGLSKARTIDVHRGVSSRLYLDFLHGKLER 1000
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20449.6756.1 vs. uniprot
Match: A0A6H5JD75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD75_9PHAE)

HSP 1 Score: 370 bits (951), Expect = 8.570e-115
Identity = 200/230 (86.96%), Postives = 213/230 (92.61%), Query Frame = 2 
Query:    2 SRDRLGMSRDGARAAFVGAFFEMVAPNIQEVSVAVEALKDARKGVPKAMPATAFSSTGPLLGNSG-GGAMDDVATPALADCDESAVVEQSVAAVPKPRNGEGLGHAEKLDMRADEIMGRVLRLASLCERAGASKELEVVLRATTTGRSDPLYSEGIGQAVGSKPVLSVYTFFLEEAFSPRRDSLATDDPVLQKRDSLALALGLSEARTINVHRGASSRLYLDFLHGKLER 688
            SRDRLGMS+DGARAAFVGA+FE+VAPNIQEVSVA+EALKDARKG+ KAMPATAFSST PLL NSG GGA DDVA PALA CD S V +QS+AAV +  NGEGLGHA+KLD RADEIMGRVLRLASLCERAGASKELEVVLRA+TTGRSDPLY+EGIGQAVG K VL VYTFFLEEAFSPRRDSLATDDPVLQKRDSLALALGLS+ARTI+VHRGASSRLYLDFLHGKLER
Sbjct:  762 SRDRLGMSKDGARAAFVGAYFEVVAPNIQEVSVAIEALKDARKGMRKAMPATAFSSTTPLLVNSGDGGARDDVAMPALARCDGSTVGDQSIAAVAEQCNGEGLGHAKKLDTRADEIMGRVLRLASLCERAGASKELEVVLRASTTGRSDPLYTEGIGQAVGPKHVLPVYTFFLEEAFSPRRDSLATDDPVLQKRDSLALALGLSKARTIDVHRGASSRLYLDFLHGKLER 991
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20449.6756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G576_ECTSI3.820e-12591.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD75_9PHAE8.570e-11586.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20449contigEcto-sp13_S_contig20449:3..1891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size689
Hectar predicted targeting categoryother localisation
Exons4
Cds size669
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463025.0143142-CDS-Ecto-sp13_S_contig20449:2..1441681463025.0143142-CDS-Ecto-sp13_S_contig20449:2..144Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20449 3..144 -
1681463025.029107-CDS-Ecto-sp13_S_contig20449:657..7941681463025.029107-CDS-Ecto-sp13_S_contig20449:657..794Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20449 658..794 -
1681463025.043776-CDS-Ecto-sp13_S_contig20449:1221..15211681463025.043776-CDS-Ecto-sp13_S_contig20449:1221..1521Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20449 1222..1521 -
1681463025.059721-CDS-Ecto-sp13_S_contig20449:1782..18721681463025.059721-CDS-Ecto-sp13_S_contig20449:1782..1872Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20449 1783..1872 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463025.0693233-UTR-Ecto-sp13_S_contig20449:1872..18911681463025.0693233-UTR-Ecto-sp13_S_contig20449:1872..1891Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20449 1873..1891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20449.6756.1prot_Ecto-sp13_S_contig20449.6756.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20449 3..1872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20449.6756.1

>prot_Ecto-sp13_S_contig20449.6756.1 ID=prot_Ecto-sp13_S_contig20449.6756.1|Name=mRNA_Ecto-sp13_S_contig20449.6756.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=223bp
MSRDGARAAFVGAFFEMVAPNIQEVSVAVEALKDARKGVPKAMPATAFSS
TGPLLGNSGGGAMDDVATPALADCDESAVVEQSVAAVPKPRNGEGLGHAE
KLDMRADEIMGRVLRLASLCERAGASKELEVVLRATTTGRSDPLYSEGIG
QAVGSKPVLSVYTFFLEEAFSPRRDSLATDDPVLQKRDSLALALGLSEAR
TINVHRGASSRLYLDFLHGKLER
back to top

mRNA from alignment at Ecto-sp13_S_contig20449:3..1891-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20449.6756.1 ID=mRNA_Ecto-sp13_S_contig20449.6756.1|Name=mRNA_Ecto-sp13_S_contig20449.6756.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1889bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20449:3..1891- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCAAGGGACCGGCTCGGCATGTCCAGAGACGGAGCCCGTGCTGCCTTCG
TGGGAGCTTTTTTCGAGATGGTGGCACCAAACATCCAGGAGGTCTCCGTC
GCCGTTGAGGTAGAGTCGTCTCTGAGAATCTGCCGTGTGTTGATTGATAA
CAAATGGTGTCCAGGAAGTCCAGTCGACACACTTGTGTTCACAATCGAAG
CTTGCCCCGACCTCAGCCTGCATGCAAACTGGTGACAAAGCACACGTTCT
ACACCCCCCCTCCGTCCCCGCCCCCCCCCCGACCTCAGCCTGCATGCACA
CCACCGTACAACCCCACTTGCTACCCCCCTCCCCCCCCCTTCCTCACATG
CACGTACGTACCCTATATAGGCGCTGAAGGATGCCCGAAAGGGCGTGCCA
AAGGCGATGCCAGCTACCGCCTTCTCGTCTACAGGTCCTCTGCTGGGCAA
CAGCGGTGGTGGTGCCATGGACGACGTGGCCACACCCGCGCTCGCTGACT
GTGATGAAAGTGCTGTAGTTGAGCAATCGGTCGCAGCTGTCCCCAAACCG
CGCAACGGAGAAGGGCTGGGTCATGCCGAGAAGCTGGACATGAGAGCTGA
CGAGATAATGGGACGAGTCCTGAGGCTAGCTTCCTTGTGTGAGAGGGCAG
GGGCATCGAAGGAACTGGAGGTACAGTAGTTAGCTTGGAGACACATTCGG
GTAGCTCGTCGACGGCAAAGCTCTCGCTATAATACTTGCACCGGTGGATG
TTTTGTAGCTTTGCCGCCAAAGAGGTACGAAGAAGAGAAGAGCAGCGAGT
GCAGCAACAGCTCGAGCACTATAGACAGAGACAGACAGGCTGAACGGGAC
ACAGCGAATAGCCGAATATACCCTACTAGTTCAAGTTATTTTGGCCTGCG
GTGCTCAGAAAGGACCCTGCCAGAGCAAACACGACACCATAGACCGCCTA
ATGTCATTCTAACTCCAGGATAAAACATATGCTGACCTGTGGGAGGCCGA
GAGAAACCGATTTGCTGCGGATGAGAAACGAGACAAAGGTGCATAATTTT
TTTGTTTTTGTAAGTGATTTTCTTTTCTTCCTTCCTCGTACGAAAAGGTG
GTGCTTCGCGCGACCACCACTGGGCGGTCGGACCCCCTGTACTCGGAGGG
CATTGGCCAGGCGGTGGGATCGAAGCCCGTACTGTCAGTGTACACGTTCT
TTCTGGAGGAGGCCTTTTCCCCTCGTCGCGACAGGTGAACGACAACGACC
CTTACGCTCACTCTTTGTTGCAACAACAACGGTAACCCCTGTATACGGCC
GCATAAACACGGCCGGTCTCTCTGTGTAAAATTTCCGGCAAAATCGCGTT
CTCATGCTCAAAAATGGTGCCAGGTGCCCGGTATAGATTCGGTCAGGTCC
CTTGGCATTAGGCGCGTGACCTTGCACGGAGCCGTTCCTGTACCCCATAC
TTCCTTTCGCCCGCCTACTAATAACAAGTTGCCTTATCCCGTCGCTATGT
CCGACGCTTGAGATCAACGCTGGCTCGAACCACAAAGACCGAGGCGAACG
AAGAGCAATGCTCGGATGCTTTCGCCGCCCTCTGCAATCCTTGACGTAGA
AAATAACGTATTATTGCGCCCCGCACCTTGATGTGGATGGCCTGTCGATC
ATCCAAGCGCTCCTTGTCGAACACTTACGTATCCCTCCCCCCCCACCCCC
CCAACGATTCATTCCTTTCCCCCGGCTACGCAACCGGAAACGGTTAGCTT
GGCCACCGACGACCCGGTGCTACAGAAGCGAGACTCTCTGGCGCTAGCGC
TCGGGCTCAGCGAGGCGAGGACCATAAATGTTCACAGAGGGGCTTCGTCT
CGCCTCTACCTCGACTTCTTGCACGGAAAGCTGGAGAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20449:3..1891-

>mRNA_Ecto-sp13_S_contig20449.6756.1 ID=mRNA_Ecto-sp13_S_contig20449.6756.1|Name=mRNA_Ecto-sp13_S_contig20449.6756.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=669bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20449:3..1891- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCAGAGACGGAGCCCGTGCTGCCTTCGTGGGAGCTTTTTTCGAGAT
GGTGGCACCAAACATCCAGGAGGTCTCCGTCGCCGTTGAGGCGCTGAAGG
ATGCCCGAAAGGGCGTGCCAAAGGCGATGCCAGCTACCGCCTTCTCGTCT
ACAGGTCCTCTGCTGGGCAACAGCGGTGGTGGTGCCATGGACGACGTGGC
CACACCCGCGCTCGCTGACTGTGATGAAAGTGCTGTAGTTGAGCAATCGG
TCGCAGCTGTCCCCAAACCGCGCAACGGAGAAGGGCTGGGTCATGCCGAG
AAGCTGGACATGAGAGCTGACGAGATAATGGGACGAGTCCTGAGGCTAGC
TTCCTTGTGTGAGAGGGCAGGGGCATCGAAGGAACTGGAGGTGGTGCTTC
GCGCGACCACCACTGGGCGGTCGGACCCCCTGTACTCGGAGGGCATTGGC
CAGGCGGTGGGATCGAAGCCCGTACTGTCAGTGTACACGTTCTTTCTGGA
GGAGGCCTTTTCCCCTCGTCGCGACAGCTTGGCCACCGACGACCCGGTGC
TACAGAAGCGAGACTCTCTGGCGCTAGCGCTCGGGCTCAGCGAGGCGAGG
ACCATAAATGTTCACAGAGGGGCTTCGTCTCGCCTCTACCTCGACTTCTT
GCACGGAAAGCTGGAGAGG
back to top