mRNA_Ecto-sp13_S_contig20443.6755.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig20443.6755.1 vs. uniprot
Match: D7FSR1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSR1_ECTSI) HSP 1 Score: 239 bits (611), Expect = 3.160e-76 Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 1
Query: 1 QRHMDDKRFERELKHKEVLQKQADQGASKESEQAPSATYDAFMRMQTGQETRTIADKINDPNRVSWEQFRKDNADKLDIPGADRKKMVEYRAQLDKERESALAKGRNRPKRKLGVSSSEXXGEGDDRNG 387
+RHMDDKRFERELKHKEVLQKQADQGASKESEQAPSATYDAFMRMQTGQETRTIADKINDPNRVSWEQFRKDNADKLDIPGADRKKMVEYRAQLDKERESALAKGRNRPKRKLGVSSSEXXGEGDDRNG
Sbjct: 37 ERHMDDKRFERELKHKEVLQKQADQGASKESEQAPSATYDAFMRMQTGQETRTIADKINDPNRVSWEQFRKDNADKLDIPGADRKKMVEYRAQLDKERESALAKGRNRPKRKLGVSSSEXXGEGDDRNG 165
BLAST of mRNA_Ecto-sp13_S_contig20443.6755.1 vs. uniprot
Match: A0A812SC88_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SC88_SYMMI) HSP 1 Score: 116 bits (290), Expect = 1.240e-28 Identity = 70/117 (59.83%), Postives = 83/117 (70.94%), Query Frame = 1
Query: 10 MDDKRFERELKHKEVLQKQADQGASKESEQAPSATYDAFMRMQTGQETRTIADKINDPNRVSWEQFRKDNADKLDIPGADRKKMVEYRAQLDKERESALAKGR-NRPKRKLGVSSSE 357
+DDKR ERE KE +KQ D A + S QA S+T+DAF RM G E RT+A+KI DPNR SWEQ++KDN DKLD+ GA+ +KM EYRAQLD+ERE LAKGR N KR L S E
Sbjct: 30 IDDKRHERE---KEYKRKQMDGTAVQPSRQAASSTFDAFQRMAAGLEGRTLAEKIADPNRPSWEQYKKDNEDKLDMMGAEMRKMTEYRAQLDREREEKLAKGRSNSYKRNLYSDSEE 143
BLAST of mRNA_Ecto-sp13_S_contig20443.6755.1 vs. uniprot
Match: A0A836CAI5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI5_9STRA) HSP 1 Score: 116 bits (291), Expect = 5.160e-28 Identity = 69/125 (55.20%), Postives = 84/125 (67.20%), Query Frame = 1
Query: 4 RHMDDKRFERELKHKEVLQK--------QADQGASKESEQ-------APSATYDAFMRMQTGQETRTIADKINDPNRVSWEQFRKDNADKLDIPGADRKKMVEYRAQLDKERESALAKGRNRPKR 333
RH+DDKRFEREL+HK+ L+ +A G + S APSA YDAF+RMQ G RTIADKINDPNR++W+ F+K NADKLD+ G D KKMVEYR QLD+ERE LA R+ K+
Sbjct: 37 RHVDDKRFERELEHKKNLEAAPYAIGKGEAGAGGDQASRTKTLLLHAAPSAAYDAFIRMQAGLGERTIADKINDPNRITWDHFKKVNADKLDLVGNDLKKMVEYRKQLDREREGRLAASRDGKKK 161
BLAST of mRNA_Ecto-sp13_S_contig20443.6755.1 vs. uniprot
Match: A0A7S3Y9Y5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9Y5_HETAK) HSP 1 Score: 111 bits (278), Expect = 2.080e-27 Identity = 61/108 (56.48%), Postives = 81/108 (75.00%), Query Frame = 1
Query: 4 RHMDDKRFERELKHKEVLQKQADQGASKES-EQAPSATYDAFMRMQTGQETRTIADKINDPNRVSWEQFRKDNADKLDIPGADRKKMVEYRAQLDKERESALAKGRNR 324
RH DD RFEREL+ K+ LQ+++ + +E +APSATYDAFMRM TGQ+ RTI +KI D NR +W+Q++KD+ DKL+I GA+ KKM+EYR QLD RE AL ++R
Sbjct: 38 RHKDDVRFERELEFKQKLQEESGKMEDEEGGAKAPSATYDAFMRMATGQQERTIQEKIADSNRPTWDQYKKDHEDKLEIAGAELKKMIEYRKQLDANREKALNDAKSR 145
BLAST of mRNA_Ecto-sp13_S_contig20443.6755.1 vs. uniprot
Match: A0A7S2SNX5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNX5_9STRA) HSP 1 Score: 102 bits (253), Expect = 4.550e-23 Identity = 61/122 (50.00%), Postives = 79/122 (64.75%), Query Frame = 1
Query: 4 RHMDDKRFERELKHKEVLQKQADQGASKESEQAP----SATYDAFMRMQTGQETRTIADKINDPNRVSWEQFRKDNADKLDIPGADRKKMVEYRAQLDKERESALAKGRNRP-KRKLGVSSS 354
RH+DD RFEREL K+ +Q +E + A SATYDAFMRM TG++ RTIADKIND NR +W++++K N + LD+ G +KM+EYR LD+ RE LA+G N KRK SS
Sbjct: 44 RHLDDVRFERELAFKKSMQPGGKAEVGEEMQAAAPAQSSATYDAFMRMATGRQERTIADKINDSNRPTWDEYKKKNEELLDMDGVQHRKMMEYRKTLDEARERELARGTNHSSKRKTAAISS 165
BLAST of mRNA_Ecto-sp13_S_contig20443.6755.1 vs. uniprot
Match: A0A482STU7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482STU7_9ARCH) HSP 1 Score: 94.7 bits (234), Expect = 1.100e-20 Identity = 61/118 (51.69%), Postives = 80/118 (67.80%), Query Frame = 1
Query: 4 RHMDDKRFERELKHKEVLQKQADQGASKESEQAPSATYDAFMRMQTGQETRTIADKINDPNRVSWEQFRKDNADKLDIPGADRKKMVEYRAQLDKERESALAKGRNRPKRKLGVSSSE 357
R + DKRFERE + +++ + A K S+T+DAF RM G E RTI+DKINDP R +WEQ++K+N DKLDI G++ +KMVEYRAQLDKER+ L K R KR+L V S+
Sbjct: 24 RQVGDKRFERE----KTVRESSGAAAVKP---VMSSTFDAFQRMAAGLEGRTISDKINDPTRPTWEQYKKENEDKLDIVGSEVRKMVEYRAQLDKERDDRL-KSR---KRELFVEDSD 130
BLAST of mRNA_Ecto-sp13_S_contig20443.6755.1 vs. uniprot
Match: A0A7S4KBM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KBM4_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.680e-20 Identity = 43/75 (57.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query: 103 PSATYDAFMRMQTGQETRTIADKINDPNRVSWEQFRKDNADKLDIPGADRKKMVEYRAQLDKERESALAKGRNRP 327
PSA+ +A MR+ G+E RTIA+K+ D NR +WEQ++KDN DKL+I G D+KKM EYR +LD +R+ L++GRNRP
Sbjct: 6 PSASMEAVMRLMAGKEERTIAEKLADSNRPTWEQYKKDNEDKLNISGLDQKKMEEYRKELDAQRDKMLSRGRNRP 80
BLAST of mRNA_Ecto-sp13_S_contig20443.6755.1 vs. uniprot
Match: A0A2D4BYE5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYE5_PYTIN) HSP 1 Score: 92.0 bits (227), Expect = 1.970e-19 Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query: 106 SATYDAFMRMQTGQETRTIADKINDPNRVSWEQFRKDNADKLDIPGADRKKMVEYRAQLDKERESALAKGRNRPKRK 336
SAT DAFMR+ TG+E RTIAD+I DPNR +WEQ++++NADKLD+ G K+M+EYR +LD RE A AK KRK
Sbjct: 42 SATMDAFMRLMTGKEERTIADRIADPNRPTWEQYKRENADKLDLSGNGEKEMLEYRRKLDAAREKAFAKRNGSSKRK 118
BLAST of mRNA_Ecto-sp13_S_contig20443.6755.1 vs. uniprot
Match: A0A3R7J1T7_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J1T7_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 2.210e-19 Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 1
Query: 106 SATYDAFMRMQTGQETRTIADKINDPNRVSWEQFRKDNADKLDIPGADRKKMVEYRAQLDKERESALAKG 315
SAT DAFMRM TG+E RTIAD+I+DPNR +WEQ++K+NADKLD+ G K+M EYR +LD RE ALA+G
Sbjct: 61 SATMDAFMRMMTGKEERTIADRISDPNRPTWEQYKKENADKLDLSGNGEKEMKEYRKKLDAAREKALARG 130
BLAST of mRNA_Ecto-sp13_S_contig20443.6755.1 vs. uniprot
Match: W7TNC4_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNC4_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.090e-18 Identity = 58/132 (43.94%), Postives = 74/132 (56.06%), Query Frame = 1
Query: 4 RHMDDKRFERELKHKEVLQKQADQ----GASKESEQA-----------PSATYDAFMRMQTGQETRTIADKINDPNRVSWEQFRKDNADKLDIPGADRKKMVEYRAQLDKERESALAKGRNRPKRKLGVSSS 354
RH+DD+R+ERE+ K+ K+ A PSA +DA +RM+ G RTI D INDPNR SWE ++K ADKLD+ GAD +KM+EYRAQLD ER LA+ R + K G S
Sbjct: 42 RHLDDQRYEREIAFKKXXXXXXXXXXXXSGGKDKAGAMIPGVTLGAPPPSAAFDALIRMEAGLGQRTIHDNINDPNRPSWEDYKKAKADKLDLAGADERKMIEYRAQLDAERARRLAQNRGEKEEKDGKKKS 173 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20443.6755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig20443.6755.1 >prot_Ecto-sp13_S_contig20443.6755.1 ID=prot_Ecto-sp13_S_contig20443.6755.1|Name=mRNA_Ecto-sp13_S_contig20443.6755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp MDDKRFERELKHKEVLQKQADQGASKESEQAPSATYDAFMRMQTGQETRTback to top mRNA from alignment at Ecto-sp13_S_contig20443:553..3123+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig20443.6755.1 ID=mRNA_Ecto-sp13_S_contig20443.6755.1|Name=mRNA_Ecto-sp13_S_contig20443.6755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2571bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20443:553..3123+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20443:553..3123+ >mRNA_Ecto-sp13_S_contig20443.6755.1 ID=mRNA_Ecto-sp13_S_contig20443.6755.1|Name=mRNA_Ecto-sp13_S_contig20443.6755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20443:553..3123+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |