mRNA_Ecto-sp13_S_contig20433.6753.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20433.6753.1
Unique NamemRNA_Ecto-sp13_S_contig20433.6753.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20433.6753.1 vs. uniprot
Match: A0A6H5KHA4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHA4_9PHAE)

HSP 1 Score: 524 bits (1349), Expect = 3.450e-184
Identity = 258/267 (96.63%), Postives = 261/267 (97.75%), Query Frame = 1 
Query:    1 RCSATPVRQTTSSPLRFLAAAHAVVPWAFPGYHDESHAWLKFIDETNVRYYAELRDPSTGAVLAQHELVSLARHPSRDMAALGLKGGDDGDRESRFLRDVGSKGIPFSPLPLRRRLIDPSESLRIVGYEVREQPGGLGQGEDPGMMIVRAKGDLAARTAMQAFVGTEHATLNPGMCGAAVLDSDFELCGCVEGVVPTAPPEAEVEAHVRALQGMPCVVEWKDLDTLLTATMGDKDDGDAAGLGGDVGKQDARETRPKKPLSSREEAQ 801
            RCSATPVRQTTSSPLRFLAAAHAVVPWAFPGYHDESHAWLKFIDETNVRYYAELRDP TGAVLAQHEL+SLARHPSRDMAALGLKGGDDGD ESRFLRDVGSKGIPFSPLPLRRRLI+PSESLRIVGYEVREQPGGLGQGEDPGMM+VRAKGDLAARTAMQAFVGTEHATLNPGMCGAAVLDSDFELCGCVEGVVPTAPPEA VEAHVRALQGMPCVVEWKDLDTLLTATMGDKDDGD AG GGDVGKQDARET PKKPLSSREEAQ
Sbjct:   23 RCSATPVRQTTSSPLRFLAAAHAVVPWAFPGYHDESHAWLKFIDETNVRYYAELRDPFTGAVLAQHELISLARHPSRDMAALGLKGGDDGDGESRFLRDVGSKGIPFSPLPLRRRLIEPSESLRIVGYEVREQPGGLGQGEDPGMMMVRAKGDLAARTAMQAFVGTEHATLNPGMCGAAVLDSDFELCGCVEGVVPTAPPEAAVEAHVRALQGMPCVVEWKDLDTLLTATMGDKDDGDVAGSGGDVGKQDARETWPKKPLSSREEAQ 289
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BLAST of mRNA_Ecto-sp13_S_contig20433.6753.1 vs. uniprot
Match: D7G6F8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6F8_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 1.330e-90
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 1 
Query:  334 LRRRLIDPSESLRIVGYEVREQPGGLGQGEDPGMMIVRAKGDLAARTAMQAFVGTEHATLNPGMCGAAVLDSDFELCGCVEGVVPTAPPEAEVEAHVRALQGMPCVVEWKDLDTLLTATMGDKDDGDAAGLGGDVGKQDA 753
            LRRRLIDPSESLRIVGYEVREQPGGLGQGEDPGMMIVRAKGDLAARTAMQAFVGTEHATLNPGMCGAAVLDSDFELCGCVEGVVPTAPPEAEVEAHVRALQGMPCVVEWKDLDTLLTATMGDKDDGDAAG GGDVGKQDA
Sbjct:   25 LRRRLIDPSESLRIVGYEVREQPGGLGQGEDPGMMIVRAKGDLAARTAMQAFVGTEHATLNPGMCGAAVLDSDFELCGCVEGVVPTAPPEAEVEAHVRALQGMPCVVEWKDLDTLLTATMGDKDDGDAAGSGGDVGKQDA 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20433.6753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHA4_9PHAE3.450e-18496.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G6F8_ECTSI1.330e-9099.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20433contigEcto-sp13_S_contig20433:436..3041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score502.3
Seed ortholog evalue1.4e-139
Seed eggNOG ortholog2880.D8LC89
Model size1381
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2C4U2@1,2S2WK@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_005670.1
Cds size804
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463024.7980525-UTR-Ecto-sp13_S_contig20433:435..10121681463024.7980525-UTR-Ecto-sp13_S_contig20433:435..1012Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20433 436..1012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463024.8106-CDS-Ecto-sp13_S_contig20433:1012..10641681463024.8106-CDS-Ecto-sp13_S_contig20433:1012..1064Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20433 1013..1064 -
1681463024.8207052-CDS-Ecto-sp13_S_contig20433:1745..23291681463024.8207052-CDS-Ecto-sp13_S_contig20433:1745..2329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20433 1746..2329 -
1681463024.8304312-CDS-Ecto-sp13_S_contig20433:2873..30411681463024.8304312-CDS-Ecto-sp13_S_contig20433:2873..3041Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20433 2874..3041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20433.6753.1prot_Ecto-sp13_S_contig20433.6753.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20433 1013..3041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20433.6753.1

>prot_Ecto-sp13_S_contig20433.6753.1 ID=prot_Ecto-sp13_S_contig20433.6753.1|Name=mRNA_Ecto-sp13_S_contig20433.6753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=268bp
RCSATPVRQTTSSPLRFLAAAHAVVPWAFPGYHDESHAWLKFIDETNVRY
YAELRDPSTGAVLAQHELVSLARHPSRDMAALGLKGGDDGDRESRFLRDV
GSKGIPFSPLPLRRRLIDPSESLRIVGYEVREQPGGLGQGEDPGMMIVRA
KGDLAARTAMQAFVGTEHATLNPGMCGAAVLDSDFELCGCVEGVVPTAPP
EAEVEAHVRALQGMPCVVEWKDLDTLLTATMGDKDDGDAAGLGGDVGKQD
ARETRPKKPLSSREEAQ*
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mRNA from alignment at Ecto-sp13_S_contig20433:436..3041-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20433.6753.1 ID=mRNA_Ecto-sp13_S_contig20433.6753.1|Name=mRNA_Ecto-sp13_S_contig20433.6753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20433:436..3041- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGCAGCGCCACCCCGGTGAGGCAAACAACCTCCTCGCCGCTGCGCTT
CCTCGCCGCGGCCCATGCGGTAGTGCCATGGGCCTTCCCTGGGTACCACG
ACGAGTCCCATGCCTGGCTCAAGTTTATCGATGAGACTAACGTTCGGTAC
TACGCGGAGCTCAGAGATGTAAGTTGTTGTTGTAAAACAGTTTGTGGGAA
AATTCGAAACTTCTTTCTTTTTTGGCATGTGTGTAAAAGAGAGCTGGGCT
TGAATGAAGAGGAGAGTTCCGCGACTTCACAGCAGAGTACAGAGGCGCGG
CGCAAGGTATGTGAAGGCAGTTTTCTGCCTGTAAGCTTGCACCAAGTCTA
GGTGCATTGTCGCCACATCTCGTTCGCGAGCAATGCTCACGCACGCTCAA
GATGAGTGTGTTCGCGGAGGCTTGATAGTAGTACCGTGCGAGGCACCCAT
GTCCGCGCGCAGAATGAACAAACAACCCATGCGTTTCGTTTGACTAGTTG
CACGGTATTCATCGGGAGGATGCACGCGCCTTCATTCGTAGGGCCACTAC
TCTGCGCTCGCTTCCGTCTCGTCATCTTTTTCCAGAATCCTTCTCCACCT
TGCCCTCTTTGGCTTTGCCGCACGAGACGACCGCGCCTGACACTCCGCCC
TGTTTGCCATCCCATCATCACCAATACCGCCGCCGCCGTGGCGCCCCCTT
TGGCCAAAACAGCCCTCCACAGGGGCTGTTCTAGCCCAACACGAGCTCGT
GAGCCTGGCCAGACACCCGTCCCGAGACATGGCCGCGCTCGGCCTTAAAG
GCGGCGATGACGGAGACAGGGAAAGCCGATTCCTCCGAGACGTCGGATCC
AAGGGCATCCCTTTCTCCCCGCTACCCCTGCGCCGACGCTTGATCGACCC
ATCGGAATCTCTCCGCATCGTCGGGTACGAGGTTCGGGAGCAGCCGGGGG
GGCTCGGGCAAGGGGAAGATCCCGGGATGATGATAGTTCGGGCCAAGGGG
GATTTGGCGGCGCGGACGGCTATGCAGGCCTTTGTGGGGACGGAGCACGC
GACTCTCAACCCGGGAATGTGCGGCGCGGCGGTGCTGGACAGCGATTTTG
AGCTCTGCGGGTGCGTGGAGGGCGTGGTGCCGACGGCTCCCCCCGAGGCG
GAGGTGGAGGCCCACGTTAGGGCCTTGCAGGGCATGCCTTGCGTGGTGGA
GTGGAAGGACTTGGACACGCTCTTGACGGCTACGATGGGTGACAAGGATG
ACGGTGATGCTGCGGGCCTGGGCGGCGACGTCGGCAAGCAAGACGCGTGA
GATTGTCTTTGGGATTTCGTTTACGGGGACAGAGAGGAAACGGCGAGCGT
AATAGGATGAAGACGAATCTGCTATTATAGTGTACAGAGGAGTGGTAGTG
ATGACGGGGGCTTGGCTACTGCATTCCACACATGTCTACATCGCTCTTAC
AGAATTTTGTGTTCACAGTTGTGTCCTGTTCGTTGAAGCCGGTACCGAGT
GCCAACGTAGTGCATGCTTCGTGCTCGTGGGAGTGTAGCGACGGGGCAGA
AAGTGGAAGCCTAGATCTGTCTACAATGGATCCGAGAGGTAGGGCCTGGT
ATGTGATGGGATGACAAACACACGGCCACGTAGACGTGTGAGCCTATGAA
GGCTTTGGTCTGACCGAAAACACACCAGATGGTAGCGCCCGCTCTGTTCT
TCACATCATAGATTATCCTCTTTCTTTCCGCTGTATAAATTCCAAATCAC
AACAGGATAATTTCCGAAAACTCGAACAGAGCCCGGAATATGATCCCAAA
AAAAGGATTGCCGACGTGCGAACCCCCGTCCGTCCCCCAGAAAAAGTTCG
AGTATCCACTGGTGCCGGGTACATCATATTGACCAAAAATGTGTTTCACG
TGTAAAGGAAAGTAGGCTTACCCCAAACCCCGCCGCCACCTTTCCTGCTT
CCCCATGTCTTGAATGTCCTCGTTCAGGCGAGAAACTCGGCCGAAGAAGC
CACTCTCCAGCAGGGAAGAGGCGCAATGATGAGTAGTCCCGGCCTTTGTA
AGGGAAAGCTTTGTGTCAGCGCTTAAATAGGCAGTCAGGTTTTATCAGGC
GGCCATTTTTTTTCTGTGTTACAGGTTTTTATGTTGCGGAAGGATATGCG
CTGCATTCTGACATGTTGTATGCAGACGTACGAGCTTTCCTCGAACTGAT
TGCGAGAAGAGTAGGCGCCCCGGTTCTTCAAAAGCGCATCTTTGATTTGG
TTTTGCTGCGGGCTGACGATCGCGATGGGACGGCGCGTGCCCTGAACGTC
CTGAACCACCTATCTGGTAGAAAGCTCGTAGACTTTGTGCAACAACGTCG
AGTGGTGCGTGGCTAAACTGGTTAGAACGGGGTATGACGTAGCTTTATTG
GTGGTTTCAGCACAGTCGCTCACGGAATTGGCCTCAAAGGACCCCCATTT
GCTTTCGATGTTGTTCGTGTGACGTGTCAACCTCTCGTCGAGTCGAAAGC
TCTGCTTCCCTTCGTAGTCGGGTTTTTTAGCCGCAGCAGAAACCCCAGTT
GGGGAACAGAGATGACTGCCAACATGAGGGAAAATGACAGATCGTTCTAA
ATCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20433:436..3041-

>mRNA_Ecto-sp13_S_contig20433.6753.1 ID=mRNA_Ecto-sp13_S_contig20433.6753.1|Name=mRNA_Ecto-sp13_S_contig20433.6753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20433:436..3041- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGCAGCGCCACCCCGGTGAGGCAAACAACCTCCTCGCCGCTGCGCTT
CCTCGCCGCGGCCCATGCGGTAGTGCCATGGGCCTTCCCTGGGTACCACG
ACGAGTCCCATGCCTGGCTCAAGTTTATCGATGAGACTAACGTTCGGTAC
TACGCGGAGCTCAGAGATCCCTCCACAGGGGCTGTTCTAGCCCAACACGA
GCTCGTGAGCCTGGCCAGACACCCGTCCCGAGACATGGCCGCGCTCGGCC
TTAAAGGCGGCGATGACGGAGACAGGGAAAGCCGATTCCTCCGAGACGTC
GGATCCAAGGGCATCCCTTTCTCCCCGCTACCCCTGCGCCGACGCTTGAT
CGACCCATCGGAATCTCTCCGCATCGTCGGGTACGAGGTTCGGGAGCAGC
CGGGGGGGCTCGGGCAAGGGGAAGATCCCGGGATGATGATAGTTCGGGCC
AAGGGGGATTTGGCGGCGCGGACGGCTATGCAGGCCTTTGTGGGGACGGA
GCACGCGACTCTCAACCCGGGAATGTGCGGCGCGGCGGTGCTGGACAGCG
ATTTTGAGCTCTGCGGGTGCGTGGAGGGCGTGGTGCCGACGGCTCCCCCC
GAGGCGGAGGTGGAGGCCCACGTTAGGGCCTTGCAGGGCATGCCTTGCGT
GGTGGAGTGGAAGGACTTGGACACGCTCTTGACGGCTACGATGGGTGACA
AGGATGACGGTGATGCTGCGGGCCTGGGCGGCGACGTCGGCAAGCAAGAC
GCGCGAGAAACTCGGCCGAAGAAGCCACTCTCCAGCAGGGAAGAGGCGCA
ATGA
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