mRNA_Ecto-sp13_S_contig20426.6750.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20426.6750.1
Unique NamemRNA_Ecto-sp13_S_contig20426.6750.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20426.6750.1 vs. uniprot
Match: D7G6K8_ECTSI (DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K8_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.410e-23
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 NLTAEQRSIVLADVKPGGVLTVLAFAGTGKTTCLRAYAQARPHLKILYLTVS-SVR 165
            NLTAEQRSIVLADVKPGGVLTVLAFAGTGKTTCLRAYAQARPHLKILYLT + SVR
Sbjct:  682 NLTAEQRSIVLADVKPGGVLTVLAFAGTGKTTCLRAYAQARPHLKILYLTFNVSVR 737
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20426.6750.1 vs. uniprot
Match: UPI0008545884 (F-box DNA helicase 1 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI0008545884)

HSP 1 Score: 59.7 bits (143), Expect = 8.150e-9
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    4 LTAEQRSIVLADVKPGGVLTVLAFAGTGKTTCLRAYAQARPHLKILYLT 150
            LT EQ+ I+  D+KPG V+ ++AFAGTGKT+ L  YA+ RP L+ LY+T
Sbjct:  345 LTNEQQQIINHDIKPGQVVKIMAFAGTGKTSTLIKYAERRPELRFLYVT 393
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20426.6750.1 vs. uniprot
Match: S0G548_9DELT (DNA helicase n=2 Tax=Desulfotignum TaxID=115780 RepID=S0G548_9DELT)

HSP 1 Score: 59.3 bits (142), Expect = 1.090e-8
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    7 TAEQRSIVLADVKPGGVLTVLAFAGTGKTTCLRAYAQARPHLKILYL 147
            TAEQ+ I+  D  PG +L +LAFAGTGKTT L AYA+ RP L+ LYL
Sbjct:    5 TAEQQQIIDTDPVPGQILKILAFAGTGKTTTLVAYARKRPGLRFLYL 51
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20426.6750.1 vs. uniprot
Match: A0A3N4I053_ASCIM (DNA helicase n=1 Tax=Ascobolus immersus RN42 TaxID=1160509 RepID=A0A3N4I053_ASCIM)

HSP 1 Score: 59.3 bits (142), Expect = 1.120e-8
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    4 LTAEQRSIVLADVKPGGVLTVLAFAGTGKTTCLRAYAQARPHLKILYL 147
            LT+EQ+ ++ AD+ PG +L V A+AGTGKT CL  YA ARPH K LY+
Sbjct:  337 LTSEQQLVLDADMGPGDLLKVKAYAGTGKTRCLIHYAAARPHKKFLYI 384
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20426.6750.1 vs. uniprot
Match: A0A0D1DX59_USTMA (DNA helicase n=1 Tax=Ustilago maydis (strain 521 / FGSC 9021) TaxID=237631 RepID=A0A0D1DX59_USTMA)

HSP 1 Score: 56.6 bits (135), Expect = 9.990e-8
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    4 LTAEQRSIVLADVKPGGVLTVLAFAGTGKTTCLRAYAQARPHLKILYL 147
            LT EQ   V  DV+PG ++ V AFAGTGKT  L AY+Q RPH + LY+
Sbjct:  376 LTHEQHRFVCRDVRPGELVKVQAFAGTGKTRSLLAYSQRRPHKRFLYI 423
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20426.6750.1 vs. uniprot
Match: D7FLU8_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU8_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.850e-7
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    4 LTAEQRSIVLADVKPGGVLTVLAFAGTGKTTCLRAYAQARPHLKILY 144
            LT+EQR +V  +V  G  LT++A+AGTGKT  LRA AQ  P LKILY
Sbjct:  147 LTSEQREVVDTEVDVGQTLTIVAYAGTGKTFTLRAVAQRNPTLKILY 193
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20426.6750.1 vs. uniprot
Match: A0A317XPD3_9BASI (DNA helicase n=1 Tax=Testicularia cyperi TaxID=1882483 RepID=A0A317XPD3_9BASI)

HSP 1 Score: 55.8 bits (133), Expect = 1.870e-7
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:    4 LTAEQRSIVLADVKPGGVLTVLAFAGTGKTTCLRAYAQARPHLKILYLT--VSSVRRAQGHCPA 189
            LT EQ   V  DV+PG ++ V AFAGTGKT  L AYA+ RP  + LY+   VS+   A+   P+
Sbjct:  332 LTEEQTRFVHCDVRPGELVKVQAFAGTGKTRSLLAYAERRPQKRFLYIAFNVSAANSARARFPS 395
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20426.6750.1 vs. uniprot
Match: A0A5C3EG37_9BASI (DNA helicase n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3EG37_9BASI)

HSP 1 Score: 55.8 bits (133), Expect = 1.870e-7
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    4 LTAEQRSIVLADVKPGGVLTVLAFAGTGKTTCLRAYAQARPHLKILYL 147
            LT EQ   V  DV+PG ++ V AFAGTGKT  L AYA+ RPH + LY+
Sbjct:  382 LTHEQGRFVRRDVRPGELIKVQAFAGTGKTRSLLAYAERRPHKRFLYI 429
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20426.6750.1 vs. uniprot
Match: R9NVK7_PSEHS (DNA helicase n=1 Tax=Pseudozyma hubeiensis (strain SY62) TaxID=1305764 RepID=R9NVK7_PSEHS)

HSP 1 Score: 55.5 bits (132), Expect = 2.550e-7
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    4 LTAEQRSIVLADVKPGGVLTVLAFAGTGKTTCLRAYAQARPHLKILYL 147
            LT EQ   V  DV+PG ++ V AFAGTGKT  L AYA+ RPH + LY+
Sbjct:  356 LTHEQDRFVRRDVRPGELVKVQAFAGTGKTRSLLAYAERRPHRRFLYI 403
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20426.6750.1 vs. uniprot
Match: A0A4U7L3E0_9BASI (DNA helicase n=1 Tax=Sporisorium graminicola TaxID=280036 RepID=A0A4U7L3E0_9BASI)

HSP 1 Score: 55.5 bits (132), Expect = 2.550e-7
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    4 LTAEQRSIVLADVKPGGVLTVLAFAGTGKTTCLRAYAQARPHLKILYL 147
            LT EQ   V  DV+PG ++ V AFAGTGKT  L AYA+ RPH + LY+
Sbjct:  385 LTHEQDRFVRRDVRPGELVKVQAFAGTGKTRSLLAYAERRPHKRFLYI 432
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20426.6750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6K8_ECTSI1.410e-2394.64DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
UPI00085458848.150e-955.10F-box DNA helicase 1 n=1 Tax=Nanorana parkeri TaxI... [more]
S0G548_9DELT1.090e-861.70DNA helicase n=2 Tax=Desulfotignum TaxID=115780 Re... [more]
A0A3N4I053_ASCIM1.120e-858.33DNA helicase n=1 Tax=Ascobolus immersus RN42 TaxID... [more]
A0A0D1DX59_USTMA9.990e-856.25DNA helicase n=1 Tax=Ustilago maydis (strain 521 /... [more]
D7FLU8_ECTSI1.850e-759.57DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A317XPD3_9BASI1.870e-746.88DNA helicase n=1 Tax=Testicularia cyperi TaxID=188... [more]
A0A5C3EG37_9BASI1.870e-756.25DNA helicase n=2 Tax=Ustilago trichophora TaxID=86... [more]
R9NVK7_PSEHS2.550e-756.25DNA helicase n=1 Tax=Pseudozyma hubeiensis (strain... [more]
A0A4U7L3E0_9BASI2.550e-756.25DNA helicase n=1 Tax=Sporisorium graminicola TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20426contigEcto-sp13_S_contig20426:2328..2525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score102.8
Seed ortholog evalue6.1e-20
Seed eggNOG ortholog2880.D7G6K8
Preferred nameFBXO18
Model size198
KEGG koko:K10300
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000151,GO:0000152,GO:0000724,GO:0000725,GO:0000737,GO:0000785,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003697,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006282,GO:0006302,GO:0006308,GO:0006310,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009607,GO:0009719,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010498,GO:0010556,GO:0010558,GO:0010562,GO:0010569,GO:0010604,GO:0010605,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0015616,GO:0016043,GO:0016462,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017116,GO:0017117,GO:0019005,GO:0019219,GO:0019220,GO:0019222,GO:0019439,GO:0019538,GO:0019941,GO:0023051,GO:0023056,GO:0030163,GO:0030674,GO:0031146,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031401,GO:0031461,GO:0032268,GO:0032270,GO:0032392,GO:0032446,GO:0032508,GO:0032991,GO:0033202,GO:0033554,GO:0034641,GO:0034645,GO:0034655,GO:0035561,GO:0035562,GO:0036211,GO:0042325,GO:0042327,GO:0042623,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043138,GO:0043140,GO:0043142,GO:0043161,GO:0043170,GO:0043224,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045005,GO:0045738,GO:0045910,GO:0045934,GO:0045937,GO:0046483,GO:0046700,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051276,GO:0051603,GO:0051716,GO:0060090,GO:0060255,GO:0060542,GO:0065007,GO:0065009,GO:0070035,GO:0070647,GO:0071103,GO:0071216,GO:0071495,GO:0071704,GO:0071840,GO:0072396,GO:0072402,GO:0072423,GO:0072429,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090329,GO:0097159,GO:0140097,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902229,GO:1902231,GO:1902494,GO:1902531,GO:1902533,GO:1904949,GO:1990234,GO:1990518,GO:2000042,GO:2000104,GO:2000112,GO:2000113,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001022,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Exons1
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG0210@1,KOG2108@2759
EC3.6.4.12
Cds size198
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463024.5653038-CDS-Ecto-sp13_S_contig20426:2327..25251681463024.5653038-CDS-Ecto-sp13_S_contig20426:2327..2525Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20426 2328..2525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20426.6750.1prot_Ecto-sp13_S_contig20426.6750.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20426 2328..2525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20426.6750.1

>prot_Ecto-sp13_S_contig20426.6750.1 ID=prot_Ecto-sp13_S_contig20426.6750.1|Name=mRNA_Ecto-sp13_S_contig20426.6750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
NLTAEQRSIVLADVKPGGVLTVLAFAGTGKTTCLRAYAQARPHLKILYLT
VSSVRRAQGHCPAKW*
back to top

mRNA from alignment at Ecto-sp13_S_contig20426:2328..2525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20426.6750.1 ID=mRNA_Ecto-sp13_S_contig20426.6750.1|Name=mRNA_Ecto-sp13_S_contig20426.6750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20426:2328..2525+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACCTGACGGCGGAGCAGCGAAGCATTGTGCTCGCAGACGTGAAGCCGGG
GGGGGTTCTAACGGTCTTGGCGTTCGCGGGGACGGGAAAGACGACGTGCC
TCAGGGCGTACGCGCAGGCGCGACCTCATCTAAAGATTCTTTACCTCACG
GTAAGTAGCGTGCGACGTGCGCAAGGCCATTGTCCAGCAAAATGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20426:2328..2525+

>mRNA_Ecto-sp13_S_contig20426.6750.1 ID=mRNA_Ecto-sp13_S_contig20426.6750.1|Name=mRNA_Ecto-sp13_S_contig20426.6750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20426:2328..2525+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACCTGACGGCGGAGCAGCGAAGCATTGTGCTCGCAGACGTGAAGCCGGG
GGGGGTTCTAACGGTCTTGGCGTTCGCGGGGACGGGAAAGACGACGTGCC
TCAGGGCGTACGCGCAGGCGCGACCTCATCTAAAGATTCTTTACCTCACG
GTAAGTAGCGTGCGACGTGCGCAAGGCCATTGTCCAGCAAAATGGTGA
back to top