mRNA_Ecto-sp13_S_contig20423.6748.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20423.6748.1
Unique NamemRNA_Ecto-sp13_S_contig20423.6748.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20423.6748.1 vs. uniprot
Match: D8LM07_ECTSI (Inosine-adenosine-guanosine-nucleoside hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM07_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 9.170e-50
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1
Query:   22 GQLLLAQTLLASESPVTVVATGPLTNLAWVLDNFPEASRKIDKVLIMGGAIDVPGNVFADDVEGFDGSAEWNIFWDPPAAKRV 270
            GQLLLAQTLLASESPVTVVATGPLTNLAWVLDNFPEASRKIDKVLIMGGAIDVPGNVFADDVEGFDGSAEWNIFWDPPAAKRV
Sbjct:  143 GQLLLAQTLLASESPVTVVATGPLTNLAWVLDNFPEASRKIDKVLIMGGAIDVPGNVFADDVEGFDGSAEWNIFWDPPAAKRV 225          
BLAST of mRNA_Ecto-sp13_S_contig20423.6748.1 vs. uniprot
Match: A0A6H5JPH9_9PHAE (IU_nuc_hydro domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH9_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.090e-49
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1
Query:   22 GQLLLAQTLLASESPVTVVATGPLTNLAWVLDNFPEASRKIDKVLIMGGAIDVPGNVFADDVEGFDGSAEWNIFWDPPAAKRV 270
            GQLLLAQTLLASESPVTVVATGPLTNLAWVLDNFPEASRKIDKVLIMGGAIDVPGNVFADDVEGFDGSAEWNIFWDPPAAKRV
Sbjct:  138 GQLLLAQTLLASESPVTVVATGPLTNLAWVLDNFPEASRKIDKVLIMGGAIDVPGNVFADDVEGFDGSAEWNIFWDPPAAKRV 220          
BLAST of mRNA_Ecto-sp13_S_contig20423.6748.1 vs. uniprot
Match: A0A7V3BVN5_9ACTN (Nucleoside hydrolase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V3BVN5_9ACTN)

HSP 1 Score: 108 bits (269), Expect = 1.570e-26
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 1
Query:   22 GQLLLAQTLLASESPVTVVATGPLTNLAWVLDNFPEASRKIDKVLIMGGAIDVPGNVFADDVEGFDGSAEWNIFWDPPAAKRV 270
            G  LLA+ LL +  PVT++ TGPLTNLAWVLD+ PE   +I+ VL MGGA++VPGNV      G DGSAEWN++WDPPAAKRV
Sbjct:  106 GHGLLARCLLETSEPVTLLVTGPLTNLAWVLDHHPEVEPRIEAVLWMGGALEVPGNV---QQPGHDGSAEWNVYWDPPAAKRV 185          
BLAST of mRNA_Ecto-sp13_S_contig20423.6748.1 vs. uniprot
Match: A0A366LNV5_9ACTN (Nucleoside hydrolase n=1 Tax=Spongiactinospora rosea TaxID=2248750 RepID=A0A366LNV5_9ACTN)

HSP 1 Score: 108 bits (269), Expect = 1.600e-26
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    1 PMNKPTTGQLLLAQTLLASESPVTVVATGPLTNLAWVLDNFPEASRKIDKVLIMGGAIDVPGNVFADDVEGFDGSAEWNIFWDPPAAKRV 270
            P++ P   QL  A  LLA+E+PVTV+ATGP+TNLAW LD  PE   KI +V+ MGGA+DVPGNV   D  G DGSAEWNI+WDP AA+RV
Sbjct:  103 PVDLPAHRQL--AAWLLAAEAPVTVLATGPMTNLAWCLDRHPEVEPKIAEVVFMGGALDVPGNV---DQPGHDGSAEWNIYWDPDAAQRV 187          
BLAST of mRNA_Ecto-sp13_S_contig20423.6748.1 vs. uniprot
Match: A0A7S0MEU6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MEU6_9CRYP)

HSP 1 Score: 99.8 bits (247), Expect = 2.020e-23
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   19 TGQLLLAQTLLASESPVTVVATGPLTNLAWVLDNFPEASRKIDKVLIMGGAIDVPGNVFADDVEGFDGSAEWNIFWDPPAAKRV 270
            TGQ LL   + +S  PVT+V TGP+TN+AW LDN P     + +V++MGGA+DVPGNVF  +    DGSAEWN++WD PA  R 
Sbjct:  110 TGQQLLVDAVKSSSEPVTIVVTGPMTNIAWALDNDPSFCSNVKQVVVMGGAVDVPGNVF--NQPNHDGSAEWNVYWDAPAFHRA 191          
BLAST of mRNA_Ecto-sp13_S_contig20423.6748.1 vs. uniprot
Match: A0A5D0P352_9ACTN (Nucleoside hydrolase n=5 Tax=Microbispora TaxID=2005 RepID=A0A5D0P352_9ACTN)

HSP 1 Score: 98.6 bits (244), Expect = 8.780e-23
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   34 LAQTLLASESPVTVVATGPLTNLAWVLDNFPEASRKIDKVLIMGGAIDVPGNVFADDVEGFDGSAEWNIFWDPPAAKRV 270
            LA  L+ +  PVTV+ATGPLTNLAW L++ PE   +I++V+ MGGAIDV GNV      G DG+AEWN+FWDP AAKRV
Sbjct:  114 LAAWLMRAPDPVTVLATGPLTNLAWCLEHHPEVESRIEEVVFMGGAIDVDGNVRQP---GHDGTAEWNLFWDPDAAKRV 189          
BLAST of mRNA_Ecto-sp13_S_contig20423.6748.1 vs. uniprot
Match: Q57ZL6_TRYB2 (Inosine-adenosine-guanosine-nucleoside hydrolase n=5 Tax=Trypanozoon TaxID=39700 RepID=Q57ZL6_TRYB2)

HSP 1 Score: 97.8 bits (242), Expect = 1.870e-22
Identity = 48/91 (52.75%), Postives = 65/91 (71.43%), Query Frame = 1
Query:    1 PMNKPTTGQLLLAQTLLASESPVTVVATGPLTNLAWVLDNFPEA-SRKIDKVLIMGGAIDVPGNVFADDVEGFDGSAEWNIFWDPPAAKRV 270
            P N+   GQ LLA  ++ S+  VTV  TGPL+N+AW ++ + EA + K+++ +IMGGA+DV GNVF       DGSAEWNI+WDPPAAK+V
Sbjct:  110 PENEAHNGQQLLADLVMKSKEKVTVCVTGPLSNMAWCIEKYGEAFTSKVEECVIMGGAVDVGGNVFLPTT---DGSAEWNIYWDPPAAKKV 197          
BLAST of mRNA_Ecto-sp13_S_contig20423.6748.1 vs. uniprot
Match: UPI001CD96E33 (nucleoside hydrolase n=1 Tax=Nonomuraea sp. NEAU-L178 TaxID=2878562 RepID=UPI001CD96E33)

HSP 1 Score: 97.4 bits (241), Expect = 2.300e-22
Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   34 LAQTLLASESPVTVVATGPLTNLAWVLDNFPEASRKIDKVLIMGGAIDVPGNVFADDVEGFDGSAEWNIFWDPPAAKRV 270
            LA  L+ + +PVTV+ATGPLTNLAW LD+ P    +I++V+ MGGA+DV GNV   D    DGSAEWN+FWDP A KRV
Sbjct:  113 LATWLMRAPAPVTVLATGPLTNLAWCLDHHPHVESRIEEVVFMGGALDVAGNVRQPD---HDGSAEWNVFWDPDALKRV 188          
BLAST of mRNA_Ecto-sp13_S_contig20423.6748.1 vs. uniprot
Match: UPI001684244B (nucleoside hydrolase n=10 Tax=unclassified Coleofasciculus TaxID=2692782 RepID=UPI001684244B)

HSP 1 Score: 97.1 bits (240), Expect = 2.730e-22
Identity = 46/86 (53.49%), Postives = 62/86 (72.09%), Query Frame = 1
Query:   13 PTTGQLLLAQTLLASESPVTVVATGPLTNLAWVLDNFPEASRKIDKVLIMGGAIDVPGNVFADDVEGFDGSAEWNIFWDPPAAKRV 270
            P +GQ  +A++L  + SPVT++ TGPLT +A  LD  PE   KI+K++ MGGA++VPGNV  D   G DGSAEWN++WDP +A RV
Sbjct:  104 PESGQEFMARSLQTAPSPVTLMVTGPLTTVATALDMAPEIEGKIEKIVWMGGALNVPGNVSRDIEPGQDGSAEWNVYWDPISANRV 189          
BLAST of mRNA_Ecto-sp13_S_contig20423.6748.1 vs. uniprot
Match: UPI00143CEEE5 (nucleoside hydrolase n=1 Tax=Allokutzneria sp. NRRL B-24872 TaxID=1137961 RepID=UPI00143CEEE5)

HSP 1 Score: 96.3 bits (238), Expect = 6.030e-22
Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   34 LAQTLLASESPVTVVATGPLTNLAWVLDNFPEASRKIDKVLIMGGAIDVPGNVFADDVEGFDGSAEWNIFWDPPAAKRV 270
            LAQ LLA+  PVT++  GPLTNLAW LD  P    KI +++ MGGAIDV GNV   D  G DGSAEWN+FWDP AA RV
Sbjct:  109 LAQWLLAAPEPVTLLMIGPLTNLAWCLDAHPAVESKIAELVFMGGAIDVVGNV---DEAGHDGSAEWNVFWDPGAAHRV 184          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20423.6748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM07_ECTSI9.170e-50100.00Inosine-adenosine-guanosine-nucleoside hydrolase n... [more]
A0A6H5JPH9_9PHAE1.090e-49100.00IU_nuc_hydro domain-containing protein n=1 Tax=Ect... [more]
A0A7V3BVN5_9ACTN1.570e-2662.65Nucleoside hydrolase n=1 Tax=Actinomycetia bacteri... [more]
A0A366LNV5_9ACTN1.600e-2662.22Nucleoside hydrolase n=1 Tax=Spongiactinospora ros... [more]
A0A7S0MEU6_9CRYP2.020e-2353.57Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A5D0P352_9ACTN8.780e-2360.76Nucleoside hydrolase n=5 Tax=Microbispora TaxID=20... [more]
Q57ZL6_TRYB21.870e-2252.75Inosine-adenosine-guanosine-nucleoside hydrolase n... [more]
UPI001CD96E332.300e-2259.49nucleoside hydrolase n=1 Tax=Nonomuraea sp. NEAU-L... [more]
UPI001684244B2.730e-2253.49nucleoside hydrolase n=10 Tax=unclassified Coleofa... [more]
UPI00143CEEE56.030e-2262.03nucleoside hydrolase n=1 Tax=Allokutzneria sp. NRR... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20423contigEcto-sp13_S_contig20423:2..1092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score171.4
Seed ortholog evalue2e-40
Seed eggNOG ortholog2880.D8LM07
Model size279
KEGG rclassRC00033,RC00063,RC00122,RC00318,RC00485
KEGG koko:K01239
KEGG ReactionR01245,R01273,R01677,R01770,R02143
KEGG Pathwayko00230,ko00760,ko01100,map00230,map00760,map01100
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.purine nucleosidase activity
EggNOG OGsCOG1957@1,KOG2938@2759
Ec32 ortholog descriptionInosine/uridine-preferring nucleoside hydrolase domain
Ec32 orthologEc-14_002390.1
EC3.2.2.1
Cds size276
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463024.494853-CDS-Ecto-sp13_S_contig20423:1..1171681463024.494853-CDS-Ecto-sp13_S_contig20423:1..117Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20423 2..117 -
1681463024.5073657-CDS-Ecto-sp13_S_contig20423:929..10891681463024.5073657-CDS-Ecto-sp13_S_contig20423:929..1089Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20423 930..1089 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463024.515525-UTR-Ecto-sp13_S_contig20423:1089..10921681463024.515525-UTR-Ecto-sp13_S_contig20423:1089..1092Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20423 1090..1092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20423.6748.1prot_Ecto-sp13_S_contig20423.6748.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20423 2..1089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20423.6748.1

>prot_Ecto-sp13_S_contig20423.6748.1 ID=prot_Ecto-sp13_S_contig20423.6748.1|Name=mRNA_Ecto-sp13_S_contig20423.6748.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
MNKPTTGQLLLAQTLLASESPVTVVATGPLTNLAWVLDNFPEASRKIDKV
LIMGGAIDVPGNVFADDVEGFDGSAEWNIFWDPPAAKRVSE*
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mRNA from alignment at Ecto-sp13_S_contig20423:2..1092-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20423.6748.1 ID=mRNA_Ecto-sp13_S_contig20423.6748.1|Name=mRNA_Ecto-sp13_S_contig20423.6748.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1091bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20423:2..1092- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCATGAACAAACCCACGACAGGTCAGCTGCTGCTGGCGCAAACCCTGCT CGCCTCCGAGTCGCCGGTGACGGTCGTCGCCACGGGGCCCCTGACCAACC TAGCCTGGGTGCTGGACAACTTTCCGGAGGCATCGCGCAAGATCGACAAG GTTTTAATCATGGGTGGGTCTCGCTTTGTCCCCTGTGTCAAGGTCAAGGT TTCGAATCTAGATAGATACAGGCATCATCATCATTATCATCATCATCACA GAGATGACTGACTTCGGGTGCTGGTGGTTGGTTGTGTTTAGTGCGGGATG CAGGCGCGCCTCTTCGTCGTCCGGGTCACTCCGACTGGCCTTTGGAAGCA CGCCAGCTACGCGTGTCCCCGCAGACGATTACAAACCGAACCGCTGCGAT AGTCGCCGTCGTCGTCGCCGTCGACGTTTACGTCTGACTGGCAAAACGTA CACATGTGTGCGTGTTTGTCGAATCGCAGATTTCCACCGGTAAGCGCGTG TTAACGTGTGTACTACTGTACGGCGTTTTTTTTCTGTTTCAGTTTTTTCC AGGAACCCACCGCGGTTGTAGATCCGACCACGCGCTTGCTTGCCCGGACA CAAGAGTGATGTAGAGTTGTGGTGTGCTTTGATGTGTACCCGTAAGTGGG AGCGCGTGCGTTTGCGTGCCATACTTAACCACGGCTGCTCGAAGCAACGA ACGCCCGCCTTCCCCCTTCTTTATTCGCGTTTGTGGCAAGGGGGTTATGT CGCTGGGTGTTGTGACCGACGCTAGGCATAGATAGATAGCTGCGGTGATT CCCACAACCAACAACAACTCGCTTTTCGGGTTTTGTTCGTGTGCTTTCGA CATGACTTGGCTTTGTGCTCGTTCTTCCCTCCCTCCATCCCTGAACCCTT CTTACGATTCCCCTTTGACCCCCGATGTGATGTGGTCTTGCCGTGGCTGC TGCTGCTCCTGCCGCCGCCGTACAGGGGGTGCGATCGACGTTCCCGGAAA CGTGTTCGCGGACGACGTGGAAGGCTTCGACGGATCGGCGGAATGGAACA TTTTCTGGGACCCGCCGGCGGCAAAGCGGGTGAGTGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20423:2..1092-

>mRNA_Ecto-sp13_S_contig20423.6748.1 ID=mRNA_Ecto-sp13_S_contig20423.6748.1|Name=mRNA_Ecto-sp13_S_contig20423.6748.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20423:2..1092- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAAACCCACGACAGGTCAGCTGCTGCTGGCGCAAACCCTGCTCGC
CTCCGAGTCGCCGGTGACGGTCGTCGCCACGGGGCCCCTGACCAACCTAG
CCTGGGTGCTGGACAACTTTCCGGAGGCATCGCGCAAGATCGACAAGGTT
TTAATCATGGGGGGTGCGATCGACGTTCCCGGAAACGTGTTCGCGGACGA
CGTGGAAGGCTTCGACGGATCGGCGGAATGGAACATTTTCTGGGACCCGC
CGGCGGCAAAGCGGGTGAGTGAGTGA
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