mRNA_Ecto-sp13_S_contig20417.6743.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20417.6743.1
Unique NamemRNA_Ecto-sp13_S_contig20417.6743.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20417.6743.1 vs. uniprot
Match: D8LU99_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU99_ECTSI)

HSP 1 Score: 300 bits (767), Expect = 5.520e-95
Identity = 142/148 (95.95%), Postives = 147/148 (99.32%), Query Frame = 1
Query:    1 VTKNGLNNQNADYGNAWYNDHTYHYGYLLYAAAVLSKFRPVFHRTYKKQLDFLVADVATMGGGRMAKYFPTARQKDFYDGHSWTSGIFPQGNGKSQESVSESINAYYGVYLLGLATGDDATKDWGRVLLAMEVRAARKYWQMPRNNGV 444
            VTK+GLNNQNADYGNAWYNDHTYHYGYLLYAAAVL+KFRPVFHRTYKKQLDFLVADVATMGGG+MAKYFPTARQKDFYDGHSWTSG+FPQGNGKSQESVSESINAYYGVYLLGLATGDDA KDWGRVLLAMEVRAARKYWQMPR+NGV
Sbjct:  524 VTKDGLNNQNADYGNAWYNDHTYHYGYLLYAAAVLTKFRPVFHRTYKKQLDFLVADVATMGGGKMAKYFPTARQKDFYDGHSWTSGMFPQGNGKSQESVSESINAYYGVYLLGLATGDDAMKDWGRVLLAMEVRAARKYWQMPRHNGV 671          
BLAST of mRNA_Ecto-sp13_S_contig20417.6743.1 vs. uniprot
Match: A0A6H5JC22_9PHAE (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC22_9PHAE)

HSP 1 Score: 301 bits (772), Expect = 4.820e-94
Identity = 144/148 (97.30%), Postives = 145/148 (97.97%), Query Frame = 1
Query:    1 VTKNGLNNQNADYGNAWYNDHTYHYGYLLYAAAVLSKFRPVFHRTYKKQLDFLVADVATMGGGRMAKYFPTARQKDFYDGHSWTSGIFPQGNGKSQESVSESINAYYGVYLLGLATGDDATKDWGRVLLAMEVRAARKYWQMPRNNGV 444
            VTKNGLNNQNADYGNAWYNDHTYHYGYLLYAAAVLSKFRPVFHRTYKKQLDFLVADVA MGGGRMAKYFPTARQKD YDGHSWTSGIFPQGNGKSQESVSESINAYYGVYL GLATGDDATKDWGRVLLAMEVRAARKYWQMPR+NGV
Sbjct:  524 VTKNGLNNQNADYGNAWYNDHTYHYGYLLYAAAVLSKFRPVFHRTYKKQLDFLVADVAAMGGGRMAKYFPTARQKDLYDGHSWTSGIFPQGNGKSQESVSESINAYYGVYLFGLATGDDATKDWGRVLLAMEVRAARKYWQMPRHNGV 671          
BLAST of mRNA_Ecto-sp13_S_contig20417.6743.1 vs. uniprot
Match: A0A835YW37_9STRA (Endo-1,3(4)-beta-glucanase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW37_9STRA)

HSP 1 Score: 191 bits (486), Expect = 1.360e-57
Identity = 90/148 (60.81%), Postives = 115/148 (77.70%), Query Frame = 1
Query:    1 VTKNGLNNQNADYGNAWYNDHTYHYGYLLYAAAVLSKFRPVFHRTYKKQLDFLVADVATMGGGRMAKYFPTARQKDFYDGHSWTSGIFPQGNGKSQESVSESINAYYGVYLLGLATGDDATKDWGRVLLAMEVRAARKYWQMPRNNGV 444
            VT +GLN+  AD+GN WYNDH +HYGY LYAAAV++K RP F+  Y++QLDF+V+D+A      +A  FPTAR KDF+DGHSW SG+F QGNGKSQES SE++NAYY VYLLG+ATG+   +DWGR+LLA E+R+  KYW M  ++ V
Sbjct:   51 VTYDGLNDAAADFGNGWYNDHHFHYGYFLYAAAVVAKNRPGFYPAYRRQLDFMVSDIACHRA--LADRFPTARHKDFFDGHSWASGLFSQGNGKSQESSSEAVNAYYAVYLLGMATGNRELRDWGRILLAGELRSTDKYWHMRNDSDV 196          
BLAST of mRNA_Ecto-sp13_S_contig20417.6743.1 vs. uniprot
Match: A0A835ZFG2_9STRA (Endo-1,3(4)-beta-glucanase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFG2_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.220e-50
Identity = 83/143 (58.04%), Postives = 104/143 (72.73%), Query Frame = 1
Query:    1 VTKNGLNNQNADYGNAWYNDHTYHYGYLLYAAAVLSKFRPVFHRTYKKQLDFLVADVATMGGGRMAKYFPTARQKDFYDGHSWTSGIFPQGNGKSQESVSESINAYYGVYLLGLATGDDATKDWGRVLLAMEVRAARKYWQMP 429
            V+K GL ++  D+GN WYNDH +HYGY +Y AAV  K+ P F+  Y++QL+ LVAD+A       +  FP AR KD YD HSW SG+FPQ NGKSQES+SE+INAYY V+L G+AT +DA +DWGRVL  ME+RA   YWQMP
Sbjct:  207 VSKRGLEDEMEDFGNGWYNDHHFHYGYFIYGAAVAIKYDPSFYTQYRRQLELLVADIANTQTN--SDLFPFARHKDMYDFHSWASGLFPQSNGKSQESISEAINAYYAVHLYGVATKNDALRDWGRVLAQMELRAGHTYWQMP 347          
BLAST of mRNA_Ecto-sp13_S_contig20417.6743.1 vs. uniprot
Match: A0A7R9UB85_9STRA (Endo-1,3(4)-beta-glucanase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB85_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.450e-46
Identity = 86/161 (53.42%), Postives = 108/161 (67.08%), Query Frame = 1
Query:    1 VTKNGLNNQNADYGNAWYNDHTYHYGYLLYAAAVLSKFRPVFHRTYKKQLDFLVADVATM----GGG---------RMAKYFPTARQKDFYDGHSWTSGIFPQGNGKSQESVSESINAYYGVYLLGLATGDDATKDWGRVLLAMEVRAARKYWQMPRNNGV 444
            VT+NGL ++ ADYGN WYNDH +HYGY +YAAAVL KF P +  TY   +D LV D+A      G G              FPTARQKD++DGHSW SG+FPQGNGKSQES SE++NAYY V L GLATG+   + WG  LL+ E+ AA+ Y+ + R+N +
Sbjct:  517 VTRNGLQDKQADYGNGWYNDHHFHYGYFIYAAAVLVKFHPDWASTYGLAVDSLVRDIAAQLPESGNGPEDLSRSQPAADPLFPTARQKDWFDGHSWASGLFPQGNGKSQESSSEAVNAYYAVSLYGLATGNAELQKWGSFLLSSEIHAAQYYYHIGRDNTI 677          
BLAST of mRNA_Ecto-sp13_S_contig20417.6743.1 vs. uniprot
Match: A0A7S3XS68_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS68_HETAK)

HSP 1 Score: 159 bits (401), Expect = 3.060e-44
Identity = 75/142 (52.82%), Postives = 96/142 (67.61%), Query Frame = 1
Query:    1 VTKNGLNNQNADYGNAWYNDHTYHYGYLLYAAAVLSKFRPVFHRTYKKQLDFLVADVATMGGGRMAKYFPTARQKDFYDGHSWTSGIFPQGNGKSQESVSESINAYYGVYLLGLATGDDATKDWGRVLLAMEVRAARKYWQM 426
            V+  GL +  AD+GN WYNDH +HYGY LY  AVL KF P ++  ++  +D L+ D+A       +  FP AR KDFYD HSW  G+F   +GKSQES SE++NAYYGVYL GLATGD    DWG++LL+ME+ A + YW M
Sbjct:  142 VSSMGLQSWAADFGNGWYNDHHFHYGYFLYTLAVLIKFDPAYYSKHQGAIDLLLGDIANRDPE--SPLFPVARHKDFYDHHSWALGLFTTWDGKSQESSSEAVNAYYGVYLFGLATGDQKFADWGQILLSMELSAGKLYWHM 281          
BLAST of mRNA_Ecto-sp13_S_contig20417.6743.1 vs. uniprot
Match: A0A6S8U7P2_9STRA (Endo-1,3(4)-beta-glucanase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8U7P2_9STRA)

HSP 1 Score: 157 bits (397), Expect = 8.440e-42
Identity = 84/150 (56.00%), Postives = 101/150 (67.33%), Query Frame = 1
Query:    1 VTKNGLNNQNADYGNAWYNDHTYHYGYLLYAAAVLSKFRPVFHRTYKKQLDFLVADVATMGGGRM-------AKYFPTARQKDFYDGHSWTSGIFPQGNGKSQESVSESINAYYGVYLLGLATGDDATKDWGRVLLAMEVRAARKYWQMP 429
            VT+ GL + +AD+GN +YNDH +HYGYLL+AAAV  K    F   +++ L  L+ DVA+ G G         A+ FP AR KDFY GHSW SGIF  G GK+QES SE+ NAYYG YLL L+ GD A  DW R LLAMEVRAAR Y+ MP
Sbjct:  532 VTEKGLYDHDADFGNGYYNDHHFHYGYLLHAAAVAVKNDAGFAAKHRRALFALLYDVASPGSGHSLDSVDVDARAFPRARHKDFYAGHSWASGIFFMGQGKAQESSSEAANAYYGAYLLALSLGDVALADWCRTLLAMEVRAARYYYHMP 681          
BLAST of mRNA_Ecto-sp13_S_contig20417.6743.1 vs. uniprot
Match: A0A7S2LFJ3_9STRA (Endo-1,3(4)-beta-glucanase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LFJ3_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.120e-41
Identity = 78/141 (55.32%), Postives = 95/141 (67.38%), Query Frame = 1
Query:    1 VTKNGLNNQNADYGNAWYNDHTYHYGYLLYAAAVLSKFRPVFHRTYKKQLDFLVADVATMGGGRMAKYFPTARQKDFYDGHSWTSGIFPQGNGKSQESVSESINAYYGVYLLGLATGDDATKDWGRVLLAMEVRAARKYWQ 423
            +T  GL+N+ AD+GN  YNDH +HYGYL YA AV+ KF   F   Y   +D +VADVA       + YFP AR K +YDGHSW SG+FPQGNGKSQES SE++N YYGVYL  +  GD     + R+LLA E+R AR YWQ
Sbjct:  384 ITTLGLDNKMADFGNGRYNDHHFHYGYLAYACAVVGKFDTSFVEQYGDVIDAIVADVAN--DDPHSPYFPIARHKSWYDGHSWASGLFPQGNGKSQESSSEAVNCYYGVYLWSIVRGDQYMNYFARLLLATEIRGARTYWQ 522          
BLAST of mRNA_Ecto-sp13_S_contig20417.6743.1 vs. uniprot
Match: A0A7S2S5N5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5N5_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.200e-40
Identity = 71/144 (49.31%), Postives = 99/144 (68.75%), Query Frame = 1
Query:   13 GLNNQNADYGNAWYNDHTYHYGYLLYAAAVLSKFRPVFHRTYKKQLDFLVADVATMGGGRMAKYFPTARQKDFYDGHSWTSGIFPQGNGKSQESVSESINAYYGVYLLGLATGDDATKDWGRVLLAMEVRAARKYWQMPRNNGV 444
            GL ++NAD+GN +YNDH YHYGYL+YA +V+  F P +   +++ +  L+ D+A   G   + +FP AR KDF+DGHSW SG+F Q NGKSQESVSE+INAYYG  LL  A  + A   +  +LL+ E+ AA+ YWQ+P +  +
Sbjct:  183 GLEDKNADFGNGYYNDHHYHYGYLMYALSVVVHFNPGYGLEHRQAILALLYDIAAPSGA--SSFFPMARHKDFFDGHSWASGLFSQANGKSQESVSEAINAYYGAALLAQAMNETALASFASLLLSTEISAAQTYWQIPNSTEI 324          
BLAST of mRNA_Ecto-sp13_S_contig20417.6743.1 vs. uniprot
Match: A0A7S1BTV3_9STRA (Endo-1,3(4)-beta-glucanase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BTV3_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.230e-40
Identity = 77/141 (54.61%), Postives = 96/141 (68.09%), Query Frame = 1
Query:    1 VTKNGLNNQNADYGNAWYNDHTYHYGYLLYAAAVLSKFRPVFHRTYKKQLDFLVADVATMGGGRMAKYFPTARQKDFYDGHSWTSGIFPQGNGKSQESVSESINAYYGVYLLGLATGDDATKDWGRVLLAMEVRAARKYWQ 423
            VT NGL +  AD+GN  YNDH +HYGYL+YAAAVL++F P F   +   +  LV DVA    G    ++P AR K +YDGHSW SG+FPQ +GKSQESVSE++N YY V L  L T DD   ++ R+LLAME+R A  YWQ
Sbjct:  540 VTHNGLRDPQADFGNGRYNDHHFHYGYLIYAAAVLTRFDPSFVDDHGNHISALVKDVANYDPGD--PHYPLARHKSWYDGHSWASGLFPQSDGKSQESVSEAVNCYYAVGLWALVTRDDTLHNFSRLLLAMEIRGAHYYWQ 678          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20417.6743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU99_ECTSI5.520e-9595.95Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
A0A6H5JC22_9PHAE4.820e-9497.30Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. ... [more]
A0A835YW37_9STRA1.360e-5760.81Endo-1,3(4)-beta-glucanase n=1 Tax=Tribonema minus... [more]
A0A835ZFG2_9STRA1.220e-5058.04Endo-1,3(4)-beta-glucanase n=1 Tax=Tribonema minus... [more]
A0A7R9UB85_9STRA2.450e-4653.42Endo-1,3(4)-beta-glucanase (Fragment) n=1 Tax=Ping... [more]
A0A7S3XS68_HETAK3.060e-4452.82Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6S8U7P2_9STRA8.440e-4256.00Endo-1,3(4)-beta-glucanase n=1 Tax=Pelagomonas cal... [more]
A0A7S2LFJ3_9STRA1.120e-4155.32Endo-1,3(4)-beta-glucanase (Fragment) n=1 Tax=Lept... [more]
A0A7S2S5N5_9STRA1.200e-4049.31Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1BTV3_9STRA1.230e-4054.61Endo-1,3(4)-beta-glucanase n=1 Tax=Corethron hystr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20417contigEcto-sp13_S_contig20417:173..1413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score302.0
Seed ortholog evalue1.5e-79
Seed eggNOG ortholog2880.D8LU99
Model size444
KEGG koko:K01180
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.chitin catabolic process
EggNOG OGsCOG5498@1,KOG2254@2759
EC3.2.1.6
Cds size444
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463024.0629056-CDS-Ecto-sp13_S_contig20417:172..2491681463024.0629056-CDS-Ecto-sp13_S_contig20417:172..249Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20417 173..249 +
1681463024.0749352-CDS-Ecto-sp13_S_contig20417:527..6751681463024.0749352-CDS-Ecto-sp13_S_contig20417:527..675Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20417 528..675 +
1681463024.084419-CDS-Ecto-sp13_S_contig20417:1194..14131681463024.084419-CDS-Ecto-sp13_S_contig20417:1194..1413Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20417 1195..1413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20417.6743.1prot_Ecto-sp13_S_contig20417.6743.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20417 173..1413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20417.6743.1

>prot_Ecto-sp13_S_contig20417.6743.1 ID=prot_Ecto-sp13_S_contig20417.6743.1|Name=mRNA_Ecto-sp13_S_contig20417.6743.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
VTKNGLNNQNADYGNAWYNDHTYHYGYLLYAAAVLSKFRPVFHRTYKKQL
DFLVADVATMGGGRMAKYFPTARQKDFYDGHSWTSGIFPQGNGKSQESVS
ESINAYYGVYLLGLATGDDATKDWGRVLLAMEVRAARKYWQMPRNNGV
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mRNA from alignment at Ecto-sp13_S_contig20417:173..1413+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20417.6743.1 ID=mRNA_Ecto-sp13_S_contig20417.6743.1|Name=mRNA_Ecto-sp13_S_contig20417.6743.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1241bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20417:173..1413+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCACCAAGAACGGCCTCAACAACCAGAACGCCGACTACGGTAACGCCTG GTATAATGACCACACCTACCACTACGGGTGAGACGATGGACGAAGAGAAA GGAACAGTGGTAGAGACGAAGAACGCAACCGCAGGAAGCCACGCACAAGT CAAACGCGGGAAATGTGTTGGACACCGTGTTTGGTATTGACTATTTAGAG CAGTTGGGTGTAGACCTAACCTCTCGTGCTGATGGATGGATGTTACGAAA TGCGAGGTTGAAGCTAAAATAGTGTCGACCAAACTAAGGGTCAAACGCGT CACACAGCACACGATGGGTTAAACTGAACAGCAACATGCAACGCTTGGTG AACAGGTACTTGCTATACGCGGCGGCGGTGCTCTCCAAGTTCCGACCAGT CTTCCACCGGACATACAAGAAACAGCTCGACTTCCTCGTGGCGGACGTGG CCACCATGGGGGGAGGAAGGATGGCGAAATACTTTCCGACTGCAAGGCAG AAGGTGACCTCCCTGCGTGCCTGATGGAATGAAGAGAGACGAGCAGCATT TGTGTACGGCTGTTTACCAAAGATGCATGGCTCTTGTTTTTGTCTGCGGT GGAGTGGATTTTTTGTTTGTAAGCTCACCGTTTCACGCACGCGTATTCTA TCGACTGCGATTCATTTCCTGGCGGTAAGTTGTGCACGGTAAGACCATGG AAGAAGTAGAAGCGATAGAACTTGGCTGAATCTGTCTTGATCGCGTAGTA ACTGCGAGACGTTATTGCATGCTAACACGCTAGTTGCGGACACGCTAGTT GTGTTGTGTTTTTGTTTTGCGTAATTCCTCGTGTTAATTCGTTCTCCCCC CTCAATAACGCAAAAAATATGTGTTGGCCACAGCTGGATTAGTCGTCATT GTTGCTTTTCATCCTGGCTGACACAATGCCACCGTTTTTACTTCATATCT CCACTGTTGTTTATCGAACACGCCACACTCACACATCCACGTGGTTGTCC CGTTCCGAACCACGCCGCCCAGGACTTCTACGACGGCCACAGCTGGACCT CCGGAATATTCCCGCAGGGGAACGGCAAGTCCCAGGAGTCCGTGTCCGAG AGCATTAACGCCTACTACGGTGTGTACCTCCTCGGCTTGGCCACCGGGGA CGACGCCACGAAGGACTGGGGTCGGGTGTTGCTCGCGATGGAGGTTCGGG CCGCTCGAAAGTACTGGCAGATGCCCAGAAACAACGGGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20417:173..1413+

>mRNA_Ecto-sp13_S_contig20417.6743.1 ID=mRNA_Ecto-sp13_S_contig20417.6743.1|Name=mRNA_Ecto-sp13_S_contig20417.6743.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20417:173..1413+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCACCAAGAACGGCCTCAACAACCAGAACGCCGACTACGGTAACGCCTG
GTATAATGACCACACCTACCACTACGGGTACTTGCTATACGCGGCGGCGG
TGCTCTCCAAGTTCCGACCAGTCTTCCACCGGACATACAAGAAACAGCTC
GACTTCCTCGTGGCGGACGTGGCCACCATGGGGGGAGGAAGGATGGCGAA
ATACTTTCCGACTGCAAGGCAGAAGGACTTCTACGACGGCCACAGCTGGA
CCTCCGGAATATTCCCGCAGGGGAACGGCAAGTCCCAGGAGTCCGTGTCC
GAGAGCATTAACGCCTACTACGGTGTGTACCTCCTCGGCTTGGCCACCGG
GGACGACGCCACGAAGGACTGGGGTCGGGTGTTGCTCGCGATGGAGGTTC
GGGCCGCTCGAAAGTACTGGCAGATGCCCAGAAACAACGGGGTG
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