mRNA_Ecto-sp13_S_contig20410.6740.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20410.6740.1
Unique NamemRNA_Ecto-sp13_S_contig20410.6740.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20410.6740.1 vs. uniprot
Match: D7FU38_ECTSI (NMO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU38_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 6.750e-71
Identity = 119/125 (95.20%), Postives = 120/125 (96.00%), Query Frame = 1 
Query:    1 DKEFDPPPRPHVSGGGGKPMSLSANNIDDMDRRGQDSQATSRVKRANTVSDLSNPVRAPGTRQVISSGSSYEKMAGYSRAVRVGKHVQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIISLALRE 375
            D EFDPPPRP VSGGGGKPMSLSANNIDDMDR G DSQAT RVKRANTVSDLSNPVRAPGTRQVISSGSSYEKMAGYSRAVRVGKHVQVAGTTATDPDGSGVLCIGDVGGQTQYIFHII+LALRE
Sbjct:  369 DMEFDPPPRPRVSGGGGKPMSLSANNIDDMDRWGLDSQATVRVKRANTVSDLSNPVRAPGTRQVISSGSSYEKMAGYSRAVRVGKHVQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIIALALRE 493
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BLAST of mRNA_Ecto-sp13_S_contig20410.6740.1 vs. uniprot
Match: A0A6H5JZB1_9PHAE (NMO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB1_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 3.910e-70
Identity = 118/125 (94.40%), Postives = 121/125 (96.80%), Query Frame = 1 
Query:    1 DKEFDPPPRPHVSGGGGKPMSLSANNIDDMDRRGQDSQATSRVKRANTVSDLSNPVRAPGTRQVISSGSSYEKMAGYSRAVRVGKHVQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIISLALRE 375
            DKEFDPPPRPHVSGGG +PMSLSANNIDDMDR G  SQAT+RVKRANTVSDLSNPVRAPGTRQVISSGSSYEKMAGYSRAVRVGKHVQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIISLAL+E
Sbjct:  473 DKEFDPPPRPHVSGGGDRPMSLSANNIDDMDRGGLGSQATARVKRANTVSDLSNPVRAPGTRQVISSGSSYEKMAGYSRAVRVGKHVQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIISLALKE 597
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BLAST of mRNA_Ecto-sp13_S_contig20410.6740.1 vs. uniprot
Match: A0A1X6NLH6_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NLH6_PORUM)

HSP 1 Score: 68.2 bits (165), Expect = 5.270e-12
Identity = 42/76 (55.26%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:  163 PVRAPGTRQVISSGSSYEKMAGYSRAVRVGKHVQVAGTTATD---PDGSGVLCI--GDVGGQTQYIFHIISLALRE 375
            P   PG RQ +SSG  YE   GYSRAVRVG H+ VAGTTATD   P G+ V  +  GD GGQT+ I   I  AL E
Sbjct:    3 PPPIPG-RQEVSSGGPYEAFVGYSRAVRVGAHISVAGTTATDLSSPPGAAVAVLHPGDAGGQTRVILATIGAALVE 77
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BLAST of mRNA_Ecto-sp13_S_contig20410.6740.1 vs. uniprot
Match: A0A2M8P0W0_9CHLR (Uncharacterized protein n=1 Tax=Candidatus Thermofonsia Clade 1 bacterium TaxID=2364210 RepID=A0A2M8P0W0_9CHLR)

HSP 1 Score: 67.4 bits (163), Expect = 7.150e-12
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:  181 TRQVISSGSSYEKMAGYSRAVRVGKHVQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIISLALR 372
            TRQ ISSGS +E +AGY+RAVR+G+H+ V+GTTATD + S  + IGD   Q +YI H I  AL+
Sbjct:    2 TRQTISSGSHWETLAGYARAVRIGRHIWVSGTTATD-EHSQPVAIGDAYEQARYILHKIERALQ 64
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BLAST of mRNA_Ecto-sp13_S_contig20410.6740.1 vs. uniprot
Match: A0A6B1E1U0_9CHLR (RidA family protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6B1E1U0_9CHLR)

HSP 1 Score: 66.2 bits (160), Expect = 2.050e-11
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:  181 TRQVISSGSSYEKMAGYSRAVRVGKHVQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIISLALRE 375
            TRQ++SSG+ YE++AGYSRAVR+G  + V+GTTATD   + V+ IGD   QT +I   I  ALRE
Sbjct:    2 TRQLVSSGTEYERIAGYSRAVRLGNLIHVSGTTATD-GAATVVGIGDSAAQTAFILKKIESALRE 65
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BLAST of mRNA_Ecto-sp13_S_contig20410.6740.1 vs. uniprot
Match: A0A1X1ST11_9MYCO (Uncharacterized protein n=1 Tax=Mycobacterium conspicuum TaxID=44010 RepID=A0A1X1ST11_9MYCO)

HSP 1 Score: 65.9 bits (159), Expect = 2.760e-11
Identity = 35/67 (52.24%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:  175 PGTRQVISSGSSYEKMAGYSRAVRVGKHVQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIISLALRE 375
            P +R ++SSGS YE + GYSRAVRVG HV VAGTT T P        GDV  QT+   H I +AL +
Sbjct:    2 PASRTLVSSGSDYESVVGYSRAVRVGPHVAVAGTTGTGPS-------GDVAAQTRDALHRIQIALEQ 61
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BLAST of mRNA_Ecto-sp13_S_contig20410.6740.1 vs. uniprot
Match: UPI0019927D90 (RidA family protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=UPI0019927D90)

HSP 1 Score: 65.9 bits (159), Expect = 2.960e-11
Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:  184 RQVISSGSSYEKMAGYSRAVRVGKHVQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIISLALRE 375
            RQ ISSG+ +E+  GYSRAVRVG HV V+GTTA+D  G  V  IGDV  Q+QYIF  I  AL E
Sbjct:    3 RQNISSGTPWERTVGYSRAVRVGNHVMVSGTTASDEQGV-VQGIGDVYAQSQYIFAKIERALIE 65
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BLAST of mRNA_Ecto-sp13_S_contig20410.6740.1 vs. uniprot
Match: A0A534LG02_9EURY (RidA family protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A534LG02_9EURY)

HSP 1 Score: 65.5 bits (158), Expect = 4.170e-11
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:  184 RQVISSGSSYEKMAGYSRAVRVGKHVQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIISLALRE 375
            R+ ++SG  +E + GYSR VR+G HV VAGTTATDPDG  V+  GD  GQ  +IF  +  AL E
Sbjct:    3 RKNVASGGRWEPIVGYSRVVRIGNHVAVAGTTATDPDGK-VVAPGDAYGQAVHIFRTMEAALAE 65
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BLAST of mRNA_Ecto-sp13_S_contig20410.6740.1 vs. uniprot
Match: A0A2W4QSM7_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W4QSM7_9CHLR)

HSP 1 Score: 65.5 bits (158), Expect = 4.260e-11
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:  184 RQVISSGSSYEKMAGYSRAVRVGKHVQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIISLALRE 375
            RQ ISSG+ +E +AGYSRAVRVG HV VAGTTA+D +G  V  +GD   QT+YI   I  AL E
Sbjct:    4 RQNISSGTPWEAVAGYSRAVRVGNHVVVAGTTASDENGK-VQGVGDPYAQTRYIIQKIERALNE 66
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BLAST of mRNA_Ecto-sp13_S_contig20410.6740.1 vs. uniprot
Match: A0A3L7YH62_9CHLR (RidA family protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3L7YH62_9CHLR)

HSP 1 Score: 65.5 bits (158), Expect = 4.660e-11
Identity = 37/65 (56.92%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:  178 GTRQVISSGSSYEKMAGYSRAVRVGKHVQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIISLALR 372
            G R  + SGS +E   GYSRAVRVG H+ VAGTTAT  DGS +L  GD  GQT+ IF I+  AL 
Sbjct:    3 GARVQVGSGSPWEPKVGYSRAVRVGNHISVAGTTATAKDGS-ILSPGDPYGQTKAIFAIVGSALE 66
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20410.6740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU38_ECTSI6.750e-7195.20NMO domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JZB1_9PHAE3.910e-7094.40NMO domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A1X6NLH6_PORUM5.270e-1255.26Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A2M8P0W0_9CHLR7.150e-1256.25Uncharacterized protein n=1 Tax=Candidatus Thermof... [more]
A0A6B1E1U0_9CHLR2.050e-1155.38RidA family protein n=1 Tax=Chloroflexi bacterium ... [more]
A0A1X1ST11_9MYCO2.760e-1152.24Uncharacterized protein n=1 Tax=Mycobacterium cons... [more]
UPI0019927D902.960e-1160.94RidA family protein n=1 Tax=Armatimonadetes bacter... [more]
A0A534LG02_9EURY4.170e-1153.13RidA family protein n=2 Tax=cellular organisms Tax... [more]
A0A2W4QSM7_9CHLR4.260e-1159.38Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A3L7YH62_9CHLR4.660e-1156.92RidA family protein n=1 Tax=Chloroflexi bacterium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20410contigEcto-sp13_S_contig20410:799..3111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score236.1
Seed ortholog evalue8.8e-60
Seed eggNOG ortholog2880.D7FU38
Model size375
KEGG rclassRC02541,RC02759
KEGG koko:K00459
KEGG ReactionR00025
KEGG Pathwayko00910,map00910
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0008150,GO:0009410,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
Exons3
EggNOG free text desc.2-nitropropane dioxygenase
EggNOG OGs2RHJM@2759,COG2070@1
EC1.13.12.16
Cds size375
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463023.8651674-CDS-Ecto-sp13_S_contig20410:798..9091681463023.8651674-CDS-Ecto-sp13_S_contig20410:798..909Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20410 799..909 -
1681463023.8777153-CDS-Ecto-sp13_S_contig20410:1625..17001681463023.8777153-CDS-Ecto-sp13_S_contig20410:1625..1700Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20410 1626..1700 -
1681463023.8890877-CDS-Ecto-sp13_S_contig20410:2922..31111681463023.8890877-CDS-Ecto-sp13_S_contig20410:2922..3111Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20410 2923..3111 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20410.6740.1prot_Ecto-sp13_S_contig20410.6740.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20410 799..3111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20410.6740.1

>prot_Ecto-sp13_S_contig20410.6740.1 ID=prot_Ecto-sp13_S_contig20410.6740.1|Name=mRNA_Ecto-sp13_S_contig20410.6740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
DKEFDPPPRPHVSGGGGKPMSLSANNIDDMDRRGQDSQATSRVKRANTVS
DLSNPVRAPGTRQVISSGSSYEKMAGYSRAVRVGKHVQVAGTTATDPDGS
GVLCIGDVGGQTQYIFHIISLALRE
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mRNA from alignment at Ecto-sp13_S_contig20410:799..3111-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20410.6740.1 ID=mRNA_Ecto-sp13_S_contig20410.6740.1|Name=mRNA_Ecto-sp13_S_contig20410.6740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2313bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20410:799..3111- (Ectocarpus species13 EcNAP12_S_4_19m)
GACAAGGAATTCGATCCCCCTCCGAGACCACACGTATCGGGAGGAGGCGG
CAAGCCCATGTCTCTCTCCGCGAACAACATCGACGACATGGATCGTCGGG
GACAGGACTCGCAGGCTACCTCGAGGGTTAAGCGCGCGAACACGGTGTCG
GACCTGTCGAATCCCGTTCGGGCACCAGGAACCCGACAGGTGATATTTGA
AAAGTGAAAATGAAACGTAAAAAAGCGCAAGAAAACAACGCTGAAAAAAT
GAAAGAAACGGAAAAAAAATGAAAACACCGTGGTATGTAACAGCAGAGTG
TAAGGGAAGATGTGTGCGGTTGAAATACAAGCTGCGTTTCTTTAACCTAA
AGTTGTCCTTATCGAGAAAGTTTGAGGCGGTGGACATTAGTCTACCTCTT
TGGCGAAGGGTAGAGTGTGTCCCGCGCTTAATCGAATTCATAGTCAAAAA
ACAAAGTTCGGGCGAACGCACAGGTTTTGCGATCATTTTTTTTTTTTCAT
CTCGATATCTCCGCAACCAAGAAGAGGCTGCCAATGCCGAAGAGTATTGT
TTTGGACGTGCCGAAAAGGGTGGTTTTTGACGCATCGATCTCGATTCCGC
GTCTTGTCGGCCCGTGTTCGATATGTACCACCCTCTTGGTTGTGGAGCTC
TCAATCGATCCAACATACCGATCGCGGTTCCGCGGAAAATTGCCCGTCGG
TGTGTGTTGCCCGCTTTTGAAACCGTAGCAAGTGGAGAGATGTCACCGCC
CCCTGACCGCTTTTCATGGCTCGATTGCTCCATGACCAAGCTTGTGCACC
AACACCAATAACTACTAAGTATCTTGGAGACATCGTTCAGGGCTTTCCAT
CGGTGTATGGGTCTCTTTCCGCACCCACTTGGTTGTAAAGAGAGCTATCG
GGCTTTGAAAGTCGGTCTGTGGGAGATGCCATCGTTTCGCCTGACGCGGG
AATTCATGTGTAGAACGCTTTCGGCAGGTCGTGCTGCATGACAGCGGCCC
TTCTGTATTGCCCGCTTGAAGCCTGGTCTCGCTTGATGGAAGCATGCCGC
TTCAAAAAGAAGCTTTAGCTGCAACCATGTTTGGATGGATACAGCAGTTT
GGCCCCGCACTTCAAAACCTCTTGTTTTGGTTGAGGCTCGTTTTTTACTT
TTTTTCAATTGGGGTACCCCCACGCCGACTATATAGGTTTAAGTGTGACT
ATGTGGGTTTTGGTGTGATTTTAGTGTAACTATATAAATAGGTGTTAGTG
TGACTATATTGTTTGTTGTGTAGGCGTGTTGACTGAGCAACCGTTCTGTA
GCCAAGTTCTTCTCTTTTGGCGACTTTGAGGTTCGAGTTCTTTACTAACA
AGGTCTGAAGTGCTATTATACAGCCGGTTCTGTACACGTGATTGGTGGAC
GATGCTACCAGGTGATATCTTCCGGCTCTTCGTACGAAAAGATGGCGGGT
TACAGCCGGGCGGTACGCGTTGGCAAGCACGTGCAGGTACGGGTTGAGCG
TCGTCTTGTTTATGGTGTTGTCGTGGTTTCTTATAGTAGTGTTGTCTGTC
TTGTTGTGGTAGTAGCAGCAGCAGCAGCAGCAGCACTGCTTCTATCAGGT
GTTAATTTCATGATACAGGTGGCAAGATATCAAGAAAGTGCTCTCGTTGT
GAAAAACACGAAGATTATCGTGGAAGACAGGAGGCTCGTTTTTAATCATT
CGCAATAATGCCTTGATGCCACGAATTGAACTTCGAGCCTTGCACCACTG
TACTCGGAAGTCGACCAGCGTGTTTATTCCTCCCCACCTCGTACAACGGA
GAACACAGTTGCTCTACTGGGGCATAGGTAGTGGACTGAAAAGTCGGGGA
GTGATATCGATAGGATAGGAAGGTTAGGGAAAACATTTTTGAGCCCCCAA
GTACTTCGAGGTAGGAACGATTCGCCATCGATGATGGCTACTGTGGGAAC
AATGCTCAATCCTCTCGAGGACTCGTGGCAAATTATCCAACCGCTAAGGG
ATGCAAAACATGAGGAACCCCCCTCGCAAAACGCAAGCATGACGACCAGC
TTCTGGTCCATCCTTACGAAACGTAGGCTGGGCCGGCGAAAACCCGGCAC
ATCGCTTCGTCCCGGCATTGTAGGGATGTGGCGTCAATGTTCTAATGAGT
ACGGCATGCTTTTACACGAGTACCACCCCCCCCCCCCCTCTCTTTTGCTC
AGGTGGCAGGCACTACCGCAACCGATCCGGATGGGTCGGGTGTGCTGTGC
ATTGGAGACGTTGGTGGCCAGACGCAGTACATCTTCCACATCATCTCCCT
AGCTCTCAGAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20410:799..3111-

>mRNA_Ecto-sp13_S_contig20410.6740.1 ID=mRNA_Ecto-sp13_S_contig20410.6740.1|Name=mRNA_Ecto-sp13_S_contig20410.6740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20410:799..3111- (Ectocarpus species13 EcNAP12_S_4_19m)
GACAAGGAATTCGATCCCCCTCCGAGACCACACGTATCGGGAGGAGGCGG
CAAGCCCATGTCTCTCTCCGCGAACAACATCGACGACATGGATCGTCGGG
GACAGGACTCGCAGGCTACCTCGAGGGTTAAGCGCGCGAACACGGTGTCG
GACCTGTCGAATCCCGTTCGGGCACCAGGAACCCGACAGGTGATATCTTC
CGGCTCTTCGTACGAAAAGATGGCGGGTTACAGCCGGGCGGTACGCGTTG
GCAAGCACGTGCAGGTGGCAGGCACTACCGCAACCGATCCGGATGGGTCG
GGTGTGCTGTGCATTGGAGACGTTGGTGGCCAGACGCAGTACATCTTCCA
CATCATCTCCCTAGCTCTCAGAGAG
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