mRNA_Ecto-sp13_S_contig2041.6739.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2041.6739.1
Unique NamemRNA_Ecto-sp13_S_contig2041.6739.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig2041.6739.1 vs. uniprot
Match: D7G6Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q5_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 1.320e-45
Identity = 92/107 (85.98%), Postives = 95/107 (88.79%), Query Frame = 1 
Query:   73 DEISRMLAVAGRAGADVESVGRALVIVEEKVVKMQAEVDEAVREKDHLRAENAALEESLCEVADAMSKSLPTRDRVPLAETRPDSVSPAPTNSPLETPHHRLPGEEE 393
            DEI RML VAGRA ADVESV RALV+ EEK+V MQAEVDEAV+E D LRAENAAL ESLCEVADAMSKSLPTRDRVPL ET PDSVSPA TNSPLETPHHRLPGEEE
Sbjct: 3059 DEIGRMLVVAGRAAADVESVRRALVVAEEKMVGMQAEVDEAVQETDRLRAENAALGESLCEVADAMSKSLPTRDRVPLTETGPDSVSPAATNSPLETPHHRLPGEEE 3165
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BLAST of mRNA_Ecto-sp13_S_contig2041.6739.1 vs. uniprot
Match: A0A6H5JJK6_9PHAE (Methyl-accepting transducer domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK6_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 1.500e-39
Identity = 106/142 (74.65%), Postives = 110/142 (77.46%), Query Frame = 1 
Query:    1 EEGPRDNFGXXXXXXXXXXXXXXADEISRMLAVAGRAGADVESVGRALVIVEEKVVKMQ-----------AEVDEAVREKDHLRAENAALEESLCEVADAMSKSLPTRDRVPLAETRPDSVSPAPTNSPLETPHHRLPGEEE 393
            EEG R NFGXXXXXXXXXXXX   DEI +MLAVAGRA ADVESV RALV+ EEKV   +           AEVDEAVRE D LRAENA LEESLCEVADAMSKSLPTRDRVPL ET PDSVSPAPTNS LE PH+ LPGE E
Sbjct: 1695 EEGSRANFGXXXXXXXXXXXXR--DEIGQMLAVAGRAAADVESVRRALVVAEEKVRPTRDGMSRDSDGTTAEVDEAVRETDRLRAENATLEESLCEVADAMSKSLPTRDRVPLTETGPDSVSPAPTNSSLENPHYPLPGETE 1834
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2041.6739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6Q5_ECTSI1.320e-4585.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJK6_9PHAE1.500e-3974.65Methyl-accepting transducer domain-containing prot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2041contigEcto-sp13_S_contig2041:8367..9685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size394
Hectar predicted targeting categoryother localisation
Exons3
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463023.8168435-CDS-Ecto-sp13_S_contig2041:8366..85041681463023.8168435-CDS-Ecto-sp13_S_contig2041:8366..8504Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2041 8367..8504 -
1681463023.8267133-CDS-Ecto-sp13_S_contig2041:9103..91961681463023.8267133-CDS-Ecto-sp13_S_contig2041:9103..9196Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2041 9104..9196 -
1681463023.836351-CDS-Ecto-sp13_S_contig2041:9523..96851681463023.836351-CDS-Ecto-sp13_S_contig2041:9523..9685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2041 9524..9685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2041.6739.1prot_Ecto-sp13_S_contig2041.6739.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2041 8367..9685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2041.6739.1

>prot_Ecto-sp13_S_contig2041.6739.1 ID=prot_Ecto-sp13_S_contig2041.6739.1|Name=mRNA_Ecto-sp13_S_contig2041.6739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
EEGPRDNFGGGGGTRHDDDDDDDADEISRMLAVAGRAGADVESVGRALVI
VEEKVVKMQAEVDEAVREKDHLRAENAALEESLCEVADAMSKSLPTRDRV
PLAETRPDSVSPAPTNSPLETPHHRLPGEEE
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mRNA from alignment at Ecto-sp13_S_contig2041:8367..9685-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2041.6739.1 ID=mRNA_Ecto-sp13_S_contig2041.6739.1|Name=mRNA_Ecto-sp13_S_contig2041.6739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1319bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2041:8367..9685- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGAGGGGCCGAGGGATAACTTCGGGGGAGGAGGGGGAACGCGACATGA
TGATGATGATGATGATGATGCTGATGAGATATCCCGGATGTTGGCGGTGG
CCGGGCGGGCGGGCGCGGACGTGGAGTCCGTGGGTCGGGCGCTTGTCATC
GTCGAAGAAAAGGTGAGGCCCACGCGTCACGGAATGAGCCGGGATAGCGA
GGGCACAACGGTATGTAGCCGGTTCAATGTAGTGGTGTAACCAGGGTATA
ATAGATCCCGCTCGGTGCGTAGTTCTGGAGCGAGTCGGCTGGTCTGAGAA
GACAGCGGCAGTGTTTATCTTATCCTCGCAAAGCGCCGCTGTGGGCAAGA
AGTAAAGGTACAACATATTGATGACAGTTGTTCCCGAACCAAGTGGACAA
CCGTCTGGCCAAAATACCCACATACCATATGCGCAAGGGATATAACCACA
CTGAGATTTTTTTGTACTGTTTTTTTTTTTAATGTGCAGGTGGTCAAGAT
GCAGGCCGAGGTTGACGAGGCTGTCCGGGAGAAAGACCACCTTCGAGCGG
AGAATGCGGCGTTGGAAGAATCCCTTTGCGAGGTATGCATGCACAGCAGC
AGCAGTGGCAACCAGCCCCCTCACTGTCCACCACCCCGCACGGGCAGTAA
ACCACTGGTTAGGTTAGCCTACGTTACCTTGGCGATGGTGCTTATCTTGC
TCGTGTGGTACACAGCTGTAATGGAGTCACAAGTACCGTAGCGGCCTTGT
CGAGACCTGTGTGCCGGTGTGTCTATTTTTCCCTATCGCATATATTTGCT
GCTGATGTGCAGCGTGGGAGGCTAGGGTTAGCGATGCAACGCAAGAGCTA
CCGTAGTCACAGAGACGACTCCTACCGGCACAACCTCGGGGGGGGGGGTT
GAGGGCCTGGTCGTCGCTCGAAGGTACTGTATCGTCAACTAACGAGACCA
ACAATTTTGCGCACGCCTGACCGATAAACCGGTGGAATAGCCTACTTTAA
CCTTCAGGAGACAGGACCAGTGACTGAGACAAAGGCAACGGCCCCGCTGA
CATTGAGAAGCAATCGCGCGCCTCCCTGCTGTCCTACCTGACGACTCATG
AGCCGGCTCGTCGACAACCTGCTAAACCTACCCCTAACCCGAAGATACGA
CGAACGCCTTTTTGTTTCTCCAACGCGACAGGTTGCCGACGCCATGTCCA
AGAGCCTGCCGACGCGGGACCGGGTACCCTTGGCGGAAACCCGTCCCGAC
AGCGTATCCCCCGCCCCGACCAACTCTCCGTTAGAGACCCCCCACCACCG
ACTCCCCGGAGAAGAAGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2041:8367..9685-

>mRNA_Ecto-sp13_S_contig2041.6739.1 ID=mRNA_Ecto-sp13_S_contig2041.6739.1|Name=mRNA_Ecto-sp13_S_contig2041.6739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2041:8367..9685- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGAGGGGCCGAGGGATAACTTCGGGGGAGGAGGGGGAACGCGACATGA
TGATGATGATGATGATGATGCTGATGAGATATCCCGGATGTTGGCGGTGG
CCGGGCGGGCGGGCGCGGACGTGGAGTCCGTGGGTCGGGCGCTTGTCATC
GTCGAAGAAAAGGTGGTCAAGATGCAGGCCGAGGTTGACGAGGCTGTCCG
GGAGAAAGACCACCTTCGAGCGGAGAATGCGGCGTTGGAAGAATCCCTTT
GCGAGGTTGCCGACGCCATGTCCAAGAGCCTGCCGACGCGGGACCGGGTA
CCCTTGGCGGAAACCCGTCCCGACAGCGTATCCCCCGCCCCGACCAACTC
TCCGTTAGAGACCCCCCACCACCGACTCCCCGGAGAAGAAGAA
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