mRNA_Ecto-sp13_S_contig20408.6736.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20408.6736.1
Unique NamemRNA_Ecto-sp13_S_contig20408.6736.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20408.6736.1 vs. uniprot
Match: A0A6H5L4I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I3_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 1.880e-46
Identity = 95/126 (75.40%), Postives = 97/126 (76.98%), Query Frame = 1 
Query:  307 VPEKKVPALAHADLFWRAAVVALVLAATNPASVGRELWETSPTMRCLMQMLVCTDFRFPPPGGSFSLNXXXXXXXXXXXXXXXXXXXXXXXXXXSVRPRLDSDGSVVSLSAHPASSSRGGGGSSDR 684
            VPEKKVPALAHADLFWRAAVVALVLAATNPASVG ELWETSPTMRCLMQMLVCTDFRFPPPGGSFSLN                          SVRPRLDSDGSVV+LSAHPASSS+GGG S DR
Sbjct: 1165 VPEKKVPALAHADLFWRAAVVALVLAATNPASVGHELWETSPTMRCLMQMLVCTDFRFPPPGGSFSLNGDGGNSGTTATGTAATKGTECGGGGGSVRPRLDSDGSVVALSAHPASSSQGGG-SGDR 1289
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BLAST of mRNA_Ecto-sp13_S_contig20408.6736.1 vs. uniprot
Match: D8LJ23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ23_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.090e-14
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:  454 MLVCTDFRFPPPGGSFSLNXXXXXXXXXXXXXXXXXXXXXXXXXXSVRPRLDSDGSVVSLSAHPASSSRGGGGSSDR 684
            MLVCTDFRFPPPGGSFSLN   XXXXXXXXXXXXXXXXXXXXXXXSVRPRLDSDGSVVSLSAHPASSSRGGG S DR
Sbjct:    1 MLVCTDFRFPPPGGSFSLNGDGXXXXXXXXXXXXXXXXXXXXXXXSVRPRLDSDGSVVSLSAHPASSSRGGG-SGDR 76
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BLAST of mRNA_Ecto-sp13_S_contig20408.6736.1 vs. uniprot
Match: A0A835Z0U3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U3_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.510e-14
Identity = 36/54 (66.67%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:  331 LAHADLFWRAAVVALVLAATNPASVGRELWETSPTMRCLMQMLVCTDFRFPPPG 492
            LA+ADLFWRA + +LVLAATNP++VGR  W+  PT+RCLMQM+VC+ + FPPPG
Sbjct:  898 LAYADLFWRACLCSLVLAATNPSTVGRWAWDHVPTLRCLMQMVVCSQYEFPPPG 951
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BLAST of mRNA_Ecto-sp13_S_contig20408.6736.1 vs. uniprot
Match: A0A4D9DCY3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCY3_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.300e-13
Identity = 34/63 (53.97%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  304 VVPEKKVPALAHADLFWRAAVVALVLAATNPASVGRELWETSPTMRCLMQMLVCTDFRFPPPG 492
            + PE+ VP LAH+++FWR A++ L+++ +NP+SVG+ LW   PT RCLMQM+VC  + FPPPG
Sbjct:  576 LTPEQ-VPPLAHSEIFWRVALLLLLVSGSNPSSVGQWLWRHCPTTRCLMQMVVCNQYHFPPPG 637
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BLAST of mRNA_Ecto-sp13_S_contig20408.6736.1 vs. uniprot
Match: A0A2G8JWK2_STIJA (Integrator complex subunit 1 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JWK2_STIJA)

HSP 1 Score: 63.9 bits (154), Expect = 3.940e-8
Identity = 26/56 (46.43%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:  319 KVPALAHADLFWRAAVVALVLAATNPASVGRELWETSPTMRCLMQMLVCTDFRFPP 486
            K P+LA  +L+W++ V+ L+LAA NP ++G+  WE  PT+RC+M+M++  +F+FPP
Sbjct:  421 KPPSLAILNLYWKSWVILLILAAFNPDNIGKTGWEHYPTLRCMMEMVMTNNFKFPP 476
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BLAST of mRNA_Ecto-sp13_S_contig20408.6736.1 vs. uniprot
Match: A0A2G8LBF1_STIJA (Integrator complex subunit 1 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LBF1_STIJA)

HSP 1 Score: 63.9 bits (154), Expect = 4.000e-8
Identity = 26/56 (46.43%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:  319 KVPALAHADLFWRAAVVALVLAATNPASVGRELWETSPTMRCLMQMLVCTDFRFPP 486
            K P+LA  +L+W++ V+ L+LAA NP ++G+  WE  PT+RC+M+M++  +F+FPP
Sbjct:  710 KPPSLAILNLYWKSWVILLILAAFNPDNIGKTGWEHYPTLRCMMEMVMTNNFKFPP 765
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BLAST of mRNA_Ecto-sp13_S_contig20408.6736.1 vs. uniprot
Match: A0A210PWK7_MIZYE (Integrator complex subunit 1 n=2 Tax=Pectinidae TaxID=6566 RepID=A0A210PWK7_MIZYE)

HSP 1 Score: 60.8 bits (146), Expect = 4.400e-7
Identity = 23/55 (41.82%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:  325 PALAHADLFWRAAVVALVLAATNPASVGRELWETSPTMRCLMQMLVCTDFRFPPP 489
            P LA ++L+W++ ++ L+L+A NP + G   WE  PT++CLM+M++  +++FPPP
Sbjct:  715 PTLAISNLYWKSWIILLILSAFNPQTFGITAWENYPTLKCLMEMVMTRNYKFPPP 769
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BLAST of mRNA_Ecto-sp13_S_contig20408.6736.1 vs. uniprot
Match: A0A8B7DM20_HYDVU (integrator complex subunit 1-like n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7DM20_HYDVU)

HSP 1 Score: 60.1 bits (144), Expect = 7.850e-7
Identity = 25/54 (46.30%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:  325 PALAHADLFWRAAVVALVLAATNPASVGRELWETSPTMRCLMQMLVCTDFRFPP 486
            P LA ++L+W+A  V LVL ATNP+++G ++W+  PT RC+M+M++   + FPP
Sbjct:  349 PNLAISNLYWKAWWVLLVLVATNPSTIGVQVWQDYPTARCMMEMIITGAYSFPP 402
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BLAST of mRNA_Ecto-sp13_S_contig20408.6736.1 vs. uniprot
Match: UPI001EE5C721 (LOW QUALITY PROTEIN: integrator complex subunit 1-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5C721)

HSP 1 Score: 59.7 bits (143), Expect = 1.060e-6
Identity = 24/55 (43.64%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:  325 PALAHADLFWRAAVVALVLAATNPASVGRELWETSPTMRCLMQMLVCTDFRFPPP 489
            P LA + L+W+A  + +V++A NP++ G   WE  PT++CLM+M +  +F+FPPP
Sbjct:  728 PTLAISALYWKAWTMLVVISAFNPSTFGLSAWENYPTLKCLMEMAMTNNFKFPPP 782
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BLAST of mRNA_Ecto-sp13_S_contig20408.6736.1 vs. uniprot
Match: UPI001E1DAED1 (integrator complex subunit 1-like isoform X1 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DAED1)

HSP 1 Score: 59.7 bits (143), Expect = 1.080e-6
Identity = 22/55 (40.00%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:  325 PALAHADLFWRAAVVALVLAATNPASVGRELWETSPTMRCLMQMLVCTDFRFPPP 489
            P LA ++L+W+A  + L+++A NP S G   WE  PT++C+++M++  +++FPPP
Sbjct:  727 PQLAISNLYWKAWTILLIISAYNPTSFGLAAWENYPTLKCMIEMVMTNNYKFPPP 781
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20408.6736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5L4I3_9PHAE1.880e-4675.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ23_ECTSI1.090e-1493.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z0U3_9STRA1.510e-1466.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9DCY3_9STRA2.300e-1353.97Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2G8JWK2_STIJA3.940e-846.43Integrator complex subunit 1 n=1 Tax=Stichopus jap... [more]
A0A2G8LBF1_STIJA4.000e-846.43Integrator complex subunit 1 n=1 Tax=Stichopus jap... [more]
A0A210PWK7_MIZYE4.400e-741.82Integrator complex subunit 1 n=2 Tax=Pectinidae Ta... [more]
A0A8B7DM20_HYDVU7.850e-746.30integrator complex subunit 1-like n=2 Tax=Hydra vu... [more]
UPI001EE5C7211.060e-643.64LOW QUALITY PROTEIN: integrator complex subunit 1-... [more]
UPI001E1DAED11.080e-640.00integrator complex subunit 1-like isoform X1 n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20408contigEcto-sp13_S_contig20408:1841..3131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score63.9
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog112098.XP_008619607.1
Preferred nameINTS1
Model size688
KEGG koko:K13138
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009301,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010466,GO:0010467,GO:0010605,GO:0010941,GO:0010951,GO:0016070,GO:0016073,GO:0016180,GO:0016591,GO:0018130,GO:0019222,GO:0019438,GO:0030162,GO:0030880,GO:0031123,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032039,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034472,GO:0034474,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040007,GO:0042795,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043281,GO:0043628,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045861,GO:0046483,GO:0048519,GO:0048523,GO:0048589,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0052547,GO:0052548,GO:0055029,GO:0060255,GO:0060548,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:2000116,GO:2000117
Exons2
EggNOG free text desc.U2 snRNA 3'-end processing
EggNOG OGsKOG4596@1,KOG4596@2759
Cds size684
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463023.5640156-CDS-Ecto-sp13_S_contig20408:1840..22931681463023.5640156-CDS-Ecto-sp13_S_contig20408:1840..2293Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20408 1841..2293 +
1681463023.5776472-CDS-Ecto-sp13_S_contig20408:2898..31291681463023.5776472-CDS-Ecto-sp13_S_contig20408:2898..3129Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20408 2899..3129 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20408.6736.1prot_Ecto-sp13_S_contig20408.6736.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20408 1841..3129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20408.6736.1

>prot_Ecto-sp13_S_contig20408.6736.1 ID=prot_Ecto-sp13_S_contig20408.6736.1|Name=mRNA_Ecto-sp13_S_contig20408.6736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp
RSLPGAEGRDGPPRPQKRRGGGGGGGGSKSGGSFGEGGSSSPRGDGGSRG
EGGGGGASPPHDDDGRGAEGDGSSAPHGGGSGGGGGARDVEQQAPPRAPV
VVVPEKKVPALAHADLFWRAAVVALVLAATNPASVGRELWETSPTMRCLM
QMLVCTDFRFPPPGGSFSLNGGGGNSSTAATGTAATKRTESGGGGGSVRP
RLDSDGSVVSLSAHPASSSRGGGGSSDR
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mRNA from alignment at Ecto-sp13_S_contig20408:1841..3131+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20408.6736.1 ID=mRNA_Ecto-sp13_S_contig20408.6736.1|Name=mRNA_Ecto-sp13_S_contig20408.6736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20408:1841..3131+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTTCTCTTCCGGGGGCAGAGGGCCGAGATGGCCCACCGCGCCCGCAAAA
GCGGCGGGGCGGCGGCGGCGGCGGCGGCGGTAGCAAGAGTGGCGGCAGCT
TCGGAGAAGGCGGCAGTAGCTCGCCGCGGGGTGACGGCGGCAGCAGAGGA
GAAGGAGGAGGAGGAGGAGCATCGCCTCCGCACGATGATGACGGACGCGG
CGCAGAGGGAGACGGGTCCTCCGCTCCTCACGGCGGCGGCAGCGGCGGCG
GTGGTGGTGCACGAGACGTTGAACAGCAAGCGCCGCCGAGGGCTCCGGTG
GTGGTGGTGCCCGAGAAAAAGGTTCCGGCCTTGGCCCACGCGGACCTCTT
CTGGCGAGCGGCGGTGGTGGCGCTGGTCCTGGCGGCGACGAACCCGGCGT
CCGTGGGGCGCGAGCTCTGGGAGACTTCGCCGACAATGCGGTGCCTTATG
CAGGTGAGGCGGGAGGCGGGGGGGGGGGCGTACTGCTATGTTCTGCATCC
CATAGCGGTTTGACGATTGACCACGCGTCCTCGAGAGGATAGAGCGTCGA
AGGGGGTTTGGTGGGAGATAAGAGGGGGATTTTTCGTAGCAGCTACACTT
GTGTGTAGGTTGTACGATTCAACGGCTGTTTGGTTTCCGACACGCAAACG
GACACCAGTGAGGATGTTTGAGTTTGTTTACGGTTAATGTTGTTGTGTTT
GTGGTAGTCAGAGGAAATGGGACACGGGTATAATAGGTTCAAGCTGTTGC
ATCGCCTGCTAGATTGCGTGCCCCGACAGGGTAAGCCACAGCAGCGAATG
CCATGCTCGCCGTATCATCGTCCCGTTGGGCACCGTCAAGCGCCGACCCA
TCCGTGGCTTCGAGAACCTCACCAACCAAAAACACTTCGATTTGTCGAAG
ATGTTACTTCAGCTGAGGGTACGTACAATGCCAACCCTTTTCCGCCCGCC
CCTGCCTCGCCTCCCCCCCACCCCTCCGGTATTCATCGCTCGCTTGCTGT
CGATATAATATCGCGTGGGACGAACAACTCGACGCGCGGGTGCCACGCAA
CCTCGAAGATGCTCGTGTGCACCGACTTTCGGTTTCCCCCGCCTGGCGGT
TCCTTTTCGCTCAACGGGGGCGGCGGCAACAGTAGTACCGCGGCGACGGG
CACGGCAGCAACCAAAAGGACCGAAAGCGGCGGCGGTGGCGGCAGTGTGA
GGCCTCGCTTGGACTCGGATGGTTCGGTCGTCTCCTTGTCCGCTCATCCG
GCTTCTTCGTCTCGAGGCGGCGGTGGCAGCAGTGACCGTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20408:1841..3131+

>mRNA_Ecto-sp13_S_contig20408.6736.1 ID=mRNA_Ecto-sp13_S_contig20408.6736.1|Name=mRNA_Ecto-sp13_S_contig20408.6736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20408:1841..3131+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTTCTCTTCCGGGGGCAGAGGGCCGAGATGGCCCACCGCGCCCGCAAAA
GCGGCGGGGCGGCGGCGGCGGCGGCGGCGGTAGCAAGAGTGGCGGCAGCT
TCGGAGAAGGCGGCAGTAGCTCGCCGCGGGGTGACGGCGGCAGCAGAGGA
GAAGGAGGAGGAGGAGGAGCATCGCCTCCGCACGATGATGACGGACGCGG
CGCAGAGGGAGACGGGTCCTCCGCTCCTCACGGCGGCGGCAGCGGCGGCG
GTGGTGGTGCACGAGACGTTGAACAGCAAGCGCCGCCGAGGGCTCCGGTG
GTGGTGGTGCCCGAGAAAAAGGTTCCGGCCTTGGCCCACGCGGACCTCTT
CTGGCGAGCGGCGGTGGTGGCGCTGGTCCTGGCGGCGACGAACCCGGCGT
CCGTGGGGCGCGAGCTCTGGGAGACTTCGCCGACAATGCGGTGCCTTATG
CAGATGCTCGTGTGCACCGACTTTCGGTTTCCCCCGCCTGGCGGTTCCTT
TTCGCTCAACGGGGGCGGCGGCAACAGTAGTACCGCGGCGACGGGCACGG
CAGCAACCAAAAGGACCGAAAGCGGCGGCGGTGGCGGCAGTGTGAGGCCT
CGCTTGGACTCGGATGGTTCGGTCGTCTCCTTGTCCGCTCATCCGGCTTC
TTCGTCTCGAGGCGGCGGTGGCAGCAGTGACCGT
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