mRNA_Ecto-sp13_S_contig20405.6735.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Match: D8LGB8_ECTSI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplast n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGB8_ECTSI) HSP 1 Score: 578 bits (1491), Expect = 7.090e-206 Identity = 288/301 (95.68%), Postives = 296/301 (98.34%), Query Frame = 1
Query: 1 QEDVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGGKDLETINDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANGGGDKAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAKVGEHWMAFDTICDATQERQDAILELVEEEIDLMLVVGGWDS 903
+EDVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPD+ TMHITNELIHNPGVNEKLDEMGVNFVPVSD+GGKDLETI+DGDVVILPAFGASLEEMQTLD+KNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFC+KYLVVK+MAEAEYVAAYIANGGGDKAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPA+VGEHWMAFDTICDATQERQDAILELVEEEIDLMLVVGGWDS
Sbjct: 73 KEDVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDK-----TMHITNELIHNPGVNEKLDEMGVNFVPVSDKGGKDLETIDDGDVVILPAFGASLEEMQTLDEKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCDKYLVVKNMAEAEYVAAYIANGGGDKAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAEVGEHWMAFDTICDATQERQDAILELVEEEIDLMLVVGGWDS 368
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Match: A0A835ZE64_9STRA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE64_9STRA) HSP 1 Score: 440 bits (1132), Expect = 2.730e-151 Identity = 216/301 (71.76%), Postives = 253/301 (84.05%), Query Frame = 1
Query: 4 EDVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGGKDLETINDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANGGGDKAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAKVGEHWMAFDTICDATQERQDAILELVEE-EIDLMLVVGGWDS 903
EDVS++M +EFTS ++ E K N + +GD T KLA+ +GFCWGVERAVAM+FQARKHFP M HITNELIHNPGVNEKLDEM + FVPV++ G KD I DGDVVILPAFGA+LEEMQ LD K+VQ+VDTTCPWVSKVWNTVDKHTK QFT+V+HGK+AHEET+AT+SF +KY+VVK + EA+YVA YI NGG +K EF+ KF A+S GFDPD DL KVGLANQTTMYKR+TR+IGK+FEK LM KYGPA +G+H+MAFDTICDATQERQDA+LELVE+ EID+MLVVGGWDS
Sbjct: 72 EDVSSMMLEEFTSPMVKELKSNSNVLQKGDVTVKLAQDFGFCWGVERAVAMSFQARKHFPSTKM-----HITNELIHNPGVNEKLDEMDIEFVPVNENGKKDFSAIQDGDVVILPAFGATLEEMQLLDSKDVQIVDTTCPWVSKVWNTVDKHTKMQFTTVMHGKYAHEETIATSSFADKYIVVKDLKEAQYVADYIVNGG-NKEEFLAKFSMALSAGFDPDTDLQKVGLANQTTMYKRDTREIGKIFEKALMAKYGPAAIGQHYMAFDTICDATQERQDAMLELVEDPEIDIMLVVGGWDS 366
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Match: W7TLS9_9STRA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLS9_9STRA) HSP 1 Score: 405 bits (1041), Expect = 3.560e-137 Identity = 201/300 (67.00%), Postives = 243/300 (81.00%), Query Frame = 1
Query: 4 EDVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGGKDLETINDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANGGGDKAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAKVGEHWMAFDTICDATQERQDAILELVEEEIDLMLVVGGWDS 903
E V + M EFTS +I+E K++ + +GD T KLA+ +GFCWGVERAVAMA++AR HFP+Q + HITNE+IHNPGVNE+L +M ++F+PV DEG K E I DVVILPAFGA+++EMQ LD K VQ+VDTTCPWV+KVW V+KH K + TSVIHGKW HEET+ATASF + Y++VK + EAEYV YI NGG DKAEFMEKFKNA+SEGFDPDVDL KVGLANQTTMYKRETR IGKLFEKT+M KYGPA+V H+ FDTICDATQERQDAI +L+EE++D +L+VGG+DS
Sbjct: 91 EGVESQMVSEFTSQLINEMKDSTYTFQKGDLTIKLAKSFGFCWGVERAVAMAYEARAHFPEQRI-----HITNEIIHNPGVNERLADMNIDFLPV-DEGKKQFEHIEKDDVVILPAFGATIQEMQLLDKKGVQIVDTTCPWVAKVWTAVEKHRKLESTSVIHGKWNHEETIATASFADVYIIVKDIHEAEYVCNYIVNGG-DKAEFMEKFKNAVSEGFDPDVDLEKVGLANQTTMYKRETRAIGKLFEKTMMHKYGPAEVKNHYAEFDTICDATQERQDAITDLMEEKLDFILIVGGFDS 383
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Match: A0A7S3YXS9_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YXS9_9EUKA) HSP 1 Score: 389 bits (999), Expect = 1.320e-130 Identity = 192/300 (64.00%), Postives = 238/300 (79.33%), Query Frame = 1
Query: 7 DVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGGKDLETINDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANGGGDKAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAKVGEHWMAFDTICDATQERQDAILELVEEE-IDLMLVVGGWDS 903
D M DEF SD+I + N ++ GD TF+LA+ +GFCWGVERAV MA +A+ H+ D+ T+HITNE+IHNPGVNEK+ +MG+ F+PV D G KD + + DVVILPAFGA+LEEM+ L D+ VQ+VDTTCPWVSKVWN+VD HT+ TS+IHG W+HEET+ATASF Y++VK+MAEAEYV Y+ NGG DKAEFMEKFKNA+S+GFDPDV L K+GLANQTTMYK+ET+ IGK ++ +M+KYGP KV EH+M FDTICDATQERQDAI +LV+E+ ID+ LVVGGWDS
Sbjct: 117 DAEKEMFDEFQSDLIKSMRTNYYTMQEGDITFRLAKDFGFCWGVERAVQMAIEAQMHYGDK-----TIHITNEIIHNPGVNEKMADMGIKFIPVVD-GVKDFSQVGNDDVVILPAFGATLEEMRMLTDRGVQIVDTTCPWVSKVWNSVDMHTRQGMTSIIHGTWSHEETIATASFAEDYIIVKNMAEAEYVINYMLNGG-DKAEFMEKFKNAVSKGFDPDVHLRKLGLANQTTMYKKETKAIGKALQRAMMKKYGPDKVNEHYMEFDTICDATQERQDAIHDLVDEKGIDMFLVVGGWDS 409
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Match: A0A067LG21_JATCU (Uncharacterized protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067LG21_JATCU) HSP 1 Score: 386 bits (991), Expect = 7.950e-130 Identity = 192/306 (62.75%), Postives = 240/306 (78.43%), Query Frame = 1
Query: 1 QEDVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGGKDLETINDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANGGGD-----KAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAKVGEHWMAFDTICDATQERQDAILELVEEEIDLMLVVGGWDS 903
+E+ LMS E+TSDII KEN T G+ T KLAE YGFCWGVERAV +A++ARK FPD+ + +TNE+IHNP VN++L+EM V +PV +EG K E ++ GDVVILPAFGA++EEM TL DK VQ+VDTTCPWVSKVWNTV+KH K +TS+IHGK++HEETVATASF KY++VK+M EA+YV YI G D + F+EKFKNA+SEGFDPDVDLVKVG+ANQTTM K ET +IGKL EKT+M K+G V +H+++F+TICDATQERQDA+ +LVEE++DL+LVVGGW+S
Sbjct: 75 KEETLELMSQEYTSDIIKTLKENGNQYTWGNITVKLAEAYGFCWGVERAVQIAYEARKQFPDE-----NIWLTNEVIHNPTVNQRLEEMNVQIIPV-EEGRKQFEVVDSGDVVILPAFGAAVEEMLTLSDKKVQIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAQYVCDYILGGQLDGSSSTREAFLEKFKNAVSEGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNDHFISFNTICDATQERQDAMFKLVEEKLDLILVVGGWNS 374
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Match: K7NBR0_SIRGR (4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=2 Tax=Cucurbitaceae TaxID=3650 RepID=K7NBR0_SIRGR) HSP 1 Score: 384 bits (986), Expect = 6.070e-129 Identity = 193/301 (64.12%), Postives = 239/301 (79.40%), Query Frame = 1
Query: 16 ALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGGKDLETINDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANGGGD-----KAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAKVGEHWMAFDTICDATQERQDAILELVEEEIDLMLVVGGWDS 903
ALM+ E+TSDII KE++ T GD T KLAE YGFCWGVERAV +A++ARK FPD+ + ITNE+IHNP VN++L+EM V +P+ +EG K E +N GDVVILPAFGA+++EM TL +KNVQ+VDTTCPWVSKVWN V+KH K FTS+IHGK+AHEETVATASF KY++VK+MAEA YV YI G D K EFM+KFKNA+S+GFDPD+DLVKVG+ANQTTM K ET +IGKL E+T+M K+G V EH+++F+TICDATQERQDA+ +LVE ++DLMLVVGGW+S
Sbjct: 89 ALMNREYTSDIIKTLKEHEYEYTWGDVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIW-----ITNEIIHNPTVNKRLEEMEVENIPL-EEGKKQFEVVNKGDVVILPAFGAAVDEMLTLSEKNVQIVDTTCPWVSKVWNVVEKHKKGDFTSIIHGKYAHEETVATASFAGKYIIVKNMAEATYVCDYILGGELDGSSPTKEEFMKKFKNAVSKGFDPDIDLVKVGIANQTTMLKGETEEIGKLVERTMMRKHGVENVNEHFISFNTICDATQERQDAMYKLVEGKLDLMLVVGGWNS 383
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Match: B9RZD3_RICCO (4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative n=1 Tax=Ricinus communis TaxID=3988 RepID=B9RZD3_RICCO) HSP 1 Score: 384 bits (985), Expect = 7.560e-129 Identity = 189/306 (61.76%), Postives = 240/306 (78.43%), Query Frame = 1
Query: 1 QEDVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGGKDLETINDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANG-----GGDKAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAKVGEHWMAFDTICDATQERQDAILELVEEEIDLMLVVGGWDS 903
+E+ LMS E+TSDII KEN T G+ T KLAE YGFCWGVERAV +A++ARK FPD+ + ITNE+IHNP VN++L+EM V +P+ +EG K E +N+GDVVILPAFGA+++EM TL +KNVQ+VDTTCPWVSKVWNTV+KH K +TS+IHGK++HEET+ATASF Y++VK+M EA YV YI G K EF++KFKNA+S+GFDPDVDLVKVG+ANQTTM K ET DIGKL EKT+M++YG V +H+++F+TICDATQERQDA+ LVEE++DL+LV+GGW+S
Sbjct: 80 KEETLQLMSQEYTSDIIKTLKENGNEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIW-----ITNEIIHNPTVNKRLEEMNVENIPL-EEGRKQFEVVNNGDVVILPAFGAAVDEMLTLSNKNVQIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGKYSHEETIATASFAGTYIIVKNMKEAMYVCDYILGGQLNGSSSTKEEFLKKFKNAVSKGFDPDVDLVKVGIANQTTMLKGETEDIGKLVEKTMMQRYGVENVNDHFISFNTICDATQERQDAMFNLVEEKLDLILVIGGWNS 379
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Match: UPI0019F8A8A7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Synechococcales cyanobacterium M55_K2018_004 TaxID=2774347 RepID=UPI0019F8A8A7) HSP 1 Score: 381 bits (979), Expect = 9.230e-129 Identity = 187/301 (62.13%), Postives = 233/301 (77.41%), Query Frame = 1
Query: 1 QEDVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGGKDLETINDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANGGGDKAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAKVGEHWMAFDTICDATQERQDAILELVEEEIDLMLVVGGWDS 903
+E VS M E+ SD+I E + N ++TRGD T +LA+ +GFCWGVERAVAMA++ R+HFP + + ITNE+IHNP VN++L EM VNF+PV G KD + GDVVILPAFGAS++EMQ L+DK +VDTTCPWVSKVWNTV+KH K TS+IHGK+ HEET+AT+SF YL+V ++ +AEYV YI NGG DKAEFM KF A S GFDPD DL +VG+ANQTTM K ET IGKLFE+T+M KYGP K+ EH++AF+TICDATQERQDA+ ELVEE++DLM+VVGG++S
Sbjct: 24 EEAVSGQMQSEYQSDLIQEIRNNNYTLTRGDVTIRLAQAFGFCWGVERAVAMAYETRQHFPSERLW-----ITNEIIHNPSVNQRLREMEVNFIPVQ-AGQKDFSVVGQGDVVILPAFGASVQEMQLLNDKGCTIVDTTCPWVSKVWNTVEKHKKTHHTSIIHGKYNHEETIATSSFAGTYLIVLNLEQAEYVCNYILNGG-DKAEFMAKFSRACSTGFDPDRDLERVGIANQTTMLKSETEQIGKLFERTMMRKYGPDKLNEHFLAFNTICDATQERQDAMFELVEEQLDLMVVVGGYNS 317
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Match: A0A7S0MIF1_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MIF1_9CRYP) HSP 1 Score: 382 bits (982), Expect = 1.510e-128 Identity = 188/302 (62.25%), Postives = 237/302 (78.48%), Query Frame = 1
Query: 1 QEDVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGGKDLETINDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANGGGDKAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAKVGEHWMAFDTICDATQERQDAILELVEEE-IDLMLVVGGWDS 903
+E+V +M++EFTSD++ + +EN + R + KLA+ YGFCWGV+RAVA+A++ARK + D + HITNE+IHNP VN +L +M +NF+ + D G KD + GDVVILPAFGASL EMQ LD K V++VDTTCPWVSKVWN VD HT+ TSVIHGKWAHEE++ATASF + YL+VK + EAEYVA YI NGG DKAEFM KFKNAMSEGFDPD DL KVG+ANQTTMYK ET I KLFE+T++ K+GP +V H+M+ DTICDATQERQDAI EL++++ +DL+LV+GG+DS
Sbjct: 78 EEEVQGMMAEEFTSDLVKQLRENNYVLERNNVVIKLAKSYGFCWGVDRAVALAYEARKFYKDDKI-----HITNEIIHNPSVNTRLRQMDINFIGLKD-GEKDFSDVKKGDVVILPAFGASLPEMQLLDAKGVKIVDTTCPWVSKVWNAVDAHTRKDMTSVIHGKWAHEESIATASFADTYLIVKDIHEAEYVADYILNGG-DKAEFMRKFKNAMSEGFDPDTDLDKVGIANQTTMYKEETAAIAKLFERTMLRKFGPQEVNSHFMSLDTICDATQERQDAISELLDDKSLDLVLVIGGFDS 372
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Match: A0A6U4E9P0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4E9P0_9STRA) HSP 1 Score: 381 bits (979), Expect = 2.320e-128 Identity = 192/303 (63.37%), Postives = 229/303 (75.58%), Query Frame = 1
Query: 1 QEDVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGG-KDLETINDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANGGGDKAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAKVGEHWMAFDTICDATQERQDAILELVEE-EIDLMLVVGGWDS 903
Q+ VS +M EF SD++ + +K T GD T K+AE+ GFCWGVERAVAMA + R+HFP+ + HITNE+IHNP VNE L GV +P G KD + + DVVILPAFGASLEEMQ LDDK V+VVD TCPWVSKVWNTVD+H + TSVIHGKW HEET+ATASFC YL++K+ EA+YVA YI NGG DKAEF+EKFKNAMSEGFDPD DL KVGLANQTTMYKRETR IG++ EK LM K+G A +G + FDTICDATQERQDAI +L+E+ +D +L+VGG+DS
Sbjct: 57 QDKVSGIMEGEFKSDMLEGMRTSKYERTVGDVTIKMAEHLGFCWGVERAVAMALETREHFPEDEL-----HITNEIIHNPQVNEMLTTAGVQIIPKEGVGAPKDFSKVKENDVVILPAFGASLEEMQFLDDKGVRVVDATCPWVSKVWNTVDRHQRMDMTSVIHGKWNHEETIATASFCETYLIMKNEDEAKYVANYIVNGG-DKAEFLEKFKNAMSEGFDPDTDLEKVGLANQTTMYKRETRQIGRIMEKALMSKFGAADIGTRYAEFDTICDATQERQDAITDLIEDGSMDFILIVGGFDS 353 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig20405.6735.1 >prot_Ecto-sp13_S_contig20405.6735.1 ID=prot_Ecto-sp13_S_contig20405.6735.1|Name=mRNA_Ecto-sp13_S_contig20405.6735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=294bp MSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARback to top mRNA from alignment at Ecto-sp13_S_contig20405:794..3132+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig20405.6735.1 ID=mRNA_Ecto-sp13_S_contig20405.6735.1|Name=mRNA_Ecto-sp13_S_contig20405.6735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20405:794..3132+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20405:794..3132+ >mRNA_Ecto-sp13_S_contig20405.6735.1 ID=mRNA_Ecto-sp13_S_contig20405.6735.1|Name=mRNA_Ecto-sp13_S_contig20405.6735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=882bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20405:794..3132+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |