mRNA_Ecto-sp13_S_contig20405.6735.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20405.6735.1
Unique NamemRNA_Ecto-sp13_S_contig20405.6735.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Match: D8LGB8_ECTSI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplast n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGB8_ECTSI)

HSP 1 Score: 578 bits (1491), Expect = 7.090e-206
Identity = 288/301 (95.68%), Postives = 296/301 (98.34%), Query Frame = 1
Query:    1 QEDVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGGKDLETINDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANGGGDKAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAKVGEHWMAFDTICDATQERQDAILELVEEEIDLMLVVGGWDS 903
            +EDVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPD+     TMHITNELIHNPGVNEKLDEMGVNFVPVSD+GGKDLETI+DGDVVILPAFGASLEEMQTLD+KNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFC+KYLVVK+MAEAEYVAAYIANGGGDKAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPA+VGEHWMAFDTICDATQERQDAILELVEEEIDLMLVVGGWDS
Sbjct:   73 KEDVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDK-----TMHITNELIHNPGVNEKLDEMGVNFVPVSDKGGKDLETIDDGDVVILPAFGASLEEMQTLDEKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCDKYLVVKNMAEAEYVAAYIANGGGDKAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAEVGEHWMAFDTICDATQERQDAILELVEEEIDLMLVVGGWDS 368          
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Match: A0A835ZE64_9STRA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE64_9STRA)

HSP 1 Score: 440 bits (1132), Expect = 2.730e-151
Identity = 216/301 (71.76%), Postives = 253/301 (84.05%), Query Frame = 1
Query:    4 EDVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGGKDLETINDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANGGGDKAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAKVGEHWMAFDTICDATQERQDAILELVEE-EIDLMLVVGGWDS 903
            EDVS++M +EFTS ++ E K N   + +GD T KLA+ +GFCWGVERAVAM+FQARKHFP   M     HITNELIHNPGVNEKLDEM + FVPV++ G KD   I DGDVVILPAFGA+LEEMQ LD K+VQ+VDTTCPWVSKVWNTVDKHTK QFT+V+HGK+AHEET+AT+SF +KY+VVK + EA+YVA YI NGG +K EF+ KF  A+S GFDPD DL KVGLANQTTMYKR+TR+IGK+FEK LM KYGPA +G+H+MAFDTICDATQERQDA+LELVE+ EID+MLVVGGWDS
Sbjct:   72 EDVSSMMLEEFTSPMVKELKSNSNVLQKGDVTVKLAQDFGFCWGVERAVAMSFQARKHFPSTKM-----HITNELIHNPGVNEKLDEMDIEFVPVNENGKKDFSAIQDGDVVILPAFGATLEEMQLLDSKDVQIVDTTCPWVSKVWNTVDKHTKMQFTTVMHGKYAHEETIATSSFADKYIVVKDLKEAQYVADYIVNGG-NKEEFLAKFSMALSAGFDPDTDLQKVGLANQTTMYKRDTREIGKIFEKALMAKYGPAAIGQHYMAFDTICDATQERQDAMLELVEDPEIDIMLVVGGWDS 366          
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Match: W7TLS9_9STRA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLS9_9STRA)

HSP 1 Score: 405 bits (1041), Expect = 3.560e-137
Identity = 201/300 (67.00%), Postives = 243/300 (81.00%), Query Frame = 1
Query:    4 EDVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGGKDLETINDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANGGGDKAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAKVGEHWMAFDTICDATQERQDAILELVEEEIDLMLVVGGWDS 903
            E V + M  EFTS +I+E K++  +  +GD T KLA+ +GFCWGVERAVAMA++AR HFP+Q +     HITNE+IHNPGVNE+L +M ++F+PV DEG K  E I   DVVILPAFGA+++EMQ LD K VQ+VDTTCPWV+KVW  V+KH K + TSVIHGKW HEET+ATASF + Y++VK + EAEYV  YI NGG DKAEFMEKFKNA+SEGFDPDVDL KVGLANQTTMYKRETR IGKLFEKT+M KYGPA+V  H+  FDTICDATQERQDAI +L+EE++D +L+VGG+DS
Sbjct:   91 EGVESQMVSEFTSQLINEMKDSTYTFQKGDLTIKLAKSFGFCWGVERAVAMAYEARAHFPEQRI-----HITNEIIHNPGVNERLADMNIDFLPV-DEGKKQFEHIEKDDVVILPAFGATIQEMQLLDKKGVQIVDTTCPWVAKVWTAVEKHRKLESTSVIHGKWNHEETIATASFADVYIIVKDIHEAEYVCNYIVNGG-DKAEFMEKFKNAVSEGFDPDVDLEKVGLANQTTMYKRETRAIGKLFEKTMMHKYGPAEVKNHYAEFDTICDATQERQDAITDLMEEKLDFILIVGGFDS 383          
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Match: A0A7S3YXS9_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YXS9_9EUKA)

HSP 1 Score: 389 bits (999), Expect = 1.320e-130
Identity = 192/300 (64.00%), Postives = 238/300 (79.33%), Query Frame = 1
Query:    7 DVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGGKDLETINDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANGGGDKAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAKVGEHWMAFDTICDATQERQDAILELVEEE-IDLMLVVGGWDS 903
            D    M DEF SD+I   + N  ++  GD TF+LA+ +GFCWGVERAV MA +A+ H+ D+     T+HITNE+IHNPGVNEK+ +MG+ F+PV D G KD   + + DVVILPAFGA+LEEM+ L D+ VQ+VDTTCPWVSKVWN+VD HT+   TS+IHG W+HEET+ATASF   Y++VK+MAEAEYV  Y+ NGG DKAEFMEKFKNA+S+GFDPDV L K+GLANQTTMYK+ET+ IGK  ++ +M+KYGP KV EH+M FDTICDATQERQDAI +LV+E+ ID+ LVVGGWDS
Sbjct:  117 DAEKEMFDEFQSDLIKSMRTNYYTMQEGDITFRLAKDFGFCWGVERAVQMAIEAQMHYGDK-----TIHITNEIIHNPGVNEKMADMGIKFIPVVD-GVKDFSQVGNDDVVILPAFGATLEEMRMLTDRGVQIVDTTCPWVSKVWNSVDMHTRQGMTSIIHGTWSHEETIATASFAEDYIIVKNMAEAEYVINYMLNGG-DKAEFMEKFKNAVSKGFDPDVHLRKLGLANQTTMYKKETKAIGKALQRAMMKKYGPDKVNEHYMEFDTICDATQERQDAIHDLVDEKGIDMFLVVGGWDS 409          
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Match: A0A067LG21_JATCU (Uncharacterized protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067LG21_JATCU)

HSP 1 Score: 386 bits (991), Expect = 7.950e-130
Identity = 192/306 (62.75%), Postives = 240/306 (78.43%), Query Frame = 1
Query:    1 QEDVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGGKDLETINDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANGGGD-----KAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAKVGEHWMAFDTICDATQERQDAILELVEEEIDLMLVVGGWDS 903
            +E+   LMS E+TSDII   KEN    T G+ T KLAE YGFCWGVERAV +A++ARK FPD+      + +TNE+IHNP VN++L+EM V  +PV +EG K  E ++ GDVVILPAFGA++EEM TL DK VQ+VDTTCPWVSKVWNTV+KH K  +TS+IHGK++HEETVATASF  KY++VK+M EA+YV  YI  G  D     +  F+EKFKNA+SEGFDPDVDLVKVG+ANQTTM K ET +IGKL EKT+M K+G   V +H+++F+TICDATQERQDA+ +LVEE++DL+LVVGGW+S
Sbjct:   75 KEETLELMSQEYTSDIIKTLKENGNQYTWGNITVKLAEAYGFCWGVERAVQIAYEARKQFPDE-----NIWLTNEVIHNPTVNQRLEEMNVQIIPV-EEGRKQFEVVDSGDVVILPAFGAAVEEMLTLSDKKVQIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAQYVCDYILGGQLDGSSSTREAFLEKFKNAVSEGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNDHFISFNTICDATQERQDAMFKLVEEKLDLILVVGGWNS 374          
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Match: K7NBR0_SIRGR (4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=2 Tax=Cucurbitaceae TaxID=3650 RepID=K7NBR0_SIRGR)

HSP 1 Score: 384 bits (986), Expect = 6.070e-129
Identity = 193/301 (64.12%), Postives = 239/301 (79.40%), Query Frame = 1
Query:   16 ALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGGKDLETINDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANGGGD-----KAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAKVGEHWMAFDTICDATQERQDAILELVEEEIDLMLVVGGWDS 903
            ALM+ E+TSDII   KE++   T GD T KLAE YGFCWGVERAV +A++ARK FPD+ +      ITNE+IHNP VN++L+EM V  +P+ +EG K  E +N GDVVILPAFGA+++EM TL +KNVQ+VDTTCPWVSKVWN V+KH K  FTS+IHGK+AHEETVATASF  KY++VK+MAEA YV  YI  G  D     K EFM+KFKNA+S+GFDPD+DLVKVG+ANQTTM K ET +IGKL E+T+M K+G   V EH+++F+TICDATQERQDA+ +LVE ++DLMLVVGGW+S
Sbjct:   89 ALMNREYTSDIIKTLKEHEYEYTWGDVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIW-----ITNEIIHNPTVNKRLEEMEVENIPL-EEGKKQFEVVNKGDVVILPAFGAAVDEMLTLSEKNVQIVDTTCPWVSKVWNVVEKHKKGDFTSIIHGKYAHEETVATASFAGKYIIVKNMAEATYVCDYILGGELDGSSPTKEEFMKKFKNAVSKGFDPDIDLVKVGIANQTTMLKGETEEIGKLVERTMMRKHGVENVNEHFISFNTICDATQERQDAMYKLVEGKLDLMLVVGGWNS 383          
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Match: B9RZD3_RICCO (4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative n=1 Tax=Ricinus communis TaxID=3988 RepID=B9RZD3_RICCO)

HSP 1 Score: 384 bits (985), Expect = 7.560e-129
Identity = 189/306 (61.76%), Postives = 240/306 (78.43%), Query Frame = 1
Query:    1 QEDVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGGKDLETINDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANG-----GGDKAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAKVGEHWMAFDTICDATQERQDAILELVEEEIDLMLVVGGWDS 903
            +E+   LMS E+TSDII   KEN    T G+ T KLAE YGFCWGVERAV +A++ARK FPD+ +      ITNE+IHNP VN++L+EM V  +P+ +EG K  E +N+GDVVILPAFGA+++EM TL +KNVQ+VDTTCPWVSKVWNTV+KH K  +TS+IHGK++HEET+ATASF   Y++VK+M EA YV  YI  G        K EF++KFKNA+S+GFDPDVDLVKVG+ANQTTM K ET DIGKL EKT+M++YG   V +H+++F+TICDATQERQDA+  LVEE++DL+LV+GGW+S
Sbjct:   80 KEETLQLMSQEYTSDIIKTLKENGNEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIW-----ITNEIIHNPTVNKRLEEMNVENIPL-EEGRKQFEVVNNGDVVILPAFGAAVDEMLTLSNKNVQIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGKYSHEETIATASFAGTYIIVKNMKEAMYVCDYILGGQLNGSSSTKEEFLKKFKNAVSKGFDPDVDLVKVGIANQTTMLKGETEDIGKLVEKTMMQRYGVENVNDHFISFNTICDATQERQDAMFNLVEEKLDLILVIGGWNS 379          
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Match: UPI0019F8A8A7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Synechococcales cyanobacterium M55_K2018_004 TaxID=2774347 RepID=UPI0019F8A8A7)

HSP 1 Score: 381 bits (979), Expect = 9.230e-129
Identity = 187/301 (62.13%), Postives = 233/301 (77.41%), Query Frame = 1
Query:    1 QEDVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGGKDLETINDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANGGGDKAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAKVGEHWMAFDTICDATQERQDAILELVEEEIDLMLVVGGWDS 903
            +E VS  M  E+ SD+I E + N  ++TRGD T +LA+ +GFCWGVERAVAMA++ R+HFP + +      ITNE+IHNP VN++L EM VNF+PV   G KD   +  GDVVILPAFGAS++EMQ L+DK   +VDTTCPWVSKVWNTV+KH K   TS+IHGK+ HEET+AT+SF   YL+V ++ +AEYV  YI NGG DKAEFM KF  A S GFDPD DL +VG+ANQTTM K ET  IGKLFE+T+M KYGP K+ EH++AF+TICDATQERQDA+ ELVEE++DLM+VVGG++S
Sbjct:   24 EEAVSGQMQSEYQSDLIQEIRNNNYTLTRGDVTIRLAQAFGFCWGVERAVAMAYETRQHFPSERLW-----ITNEIIHNPSVNQRLREMEVNFIPVQ-AGQKDFSVVGQGDVVILPAFGASVQEMQLLNDKGCTIVDTTCPWVSKVWNTVEKHKKTHHTSIIHGKYNHEETIATSSFAGTYLIVLNLEQAEYVCNYILNGG-DKAEFMAKFSRACSTGFDPDRDLERVGIANQTTMLKSETEQIGKLFERTMMRKYGPDKLNEHFLAFNTICDATQERQDAMFELVEEQLDLMVVVGGYNS 317          
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Match: A0A7S0MIF1_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MIF1_9CRYP)

HSP 1 Score: 382 bits (982), Expect = 1.510e-128
Identity = 188/302 (62.25%), Postives = 237/302 (78.48%), Query Frame = 1
Query:    1 QEDVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGGKDLETINDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANGGGDKAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAKVGEHWMAFDTICDATQERQDAILELVEEE-IDLMLVVGGWDS 903
            +E+V  +M++EFTSD++ + +EN   + R +   KLA+ YGFCWGV+RAVA+A++ARK + D  +     HITNE+IHNP VN +L +M +NF+ + D G KD   +  GDVVILPAFGASL EMQ LD K V++VDTTCPWVSKVWN VD HT+   TSVIHGKWAHEE++ATASF + YL+VK + EAEYVA YI NGG DKAEFM KFKNAMSEGFDPD DL KVG+ANQTTMYK ET  I KLFE+T++ K+GP +V  H+M+ DTICDATQERQDAI EL++++ +DL+LV+GG+DS
Sbjct:   78 EEEVQGMMAEEFTSDLVKQLRENNYVLERNNVVIKLAKSYGFCWGVDRAVALAYEARKFYKDDKI-----HITNEIIHNPSVNTRLRQMDINFIGLKD-GEKDFSDVKKGDVVILPAFGASLPEMQLLDAKGVKIVDTTCPWVSKVWNAVDAHTRKDMTSVIHGKWAHEESIATASFADTYLIVKDIHEAEYVADYILNGG-DKAEFMRKFKNAMSEGFDPDTDLDKVGIANQTTMYKEETAAIAKLFERTMLRKFGPQEVNSHFMSLDTICDATQERQDAISELLDDKSLDLVLVIGGFDS 372          
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Match: A0A6U4E9P0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4E9P0_9STRA)

HSP 1 Score: 381 bits (979), Expect = 2.320e-128
Identity = 192/303 (63.37%), Postives = 229/303 (75.58%), Query Frame = 1
Query:    1 QEDVSALMSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQARKHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGG-KDLETINDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQFTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANGGGDKAEFMEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYGPAKVGEHWMAFDTICDATQERQDAILELVEE-EIDLMLVVGGWDS 903
            Q+ VS +M  EF SD++   + +K   T GD T K+AE+ GFCWGVERAVAMA + R+HFP+  +     HITNE+IHNP VNE L   GV  +P    G  KD   + + DVVILPAFGASLEEMQ LDDK V+VVD TCPWVSKVWNTVD+H +   TSVIHGKW HEET+ATASFC  YL++K+  EA+YVA YI NGG DKAEF+EKFKNAMSEGFDPD DL KVGLANQTTMYKRETR IG++ EK LM K+G A +G  +  FDTICDATQERQDAI +L+E+  +D +L+VGG+DS
Sbjct:   57 QDKVSGIMEGEFKSDMLEGMRTSKYERTVGDVTIKMAEHLGFCWGVERAVAMALETREHFPEDEL-----HITNEIIHNPQVNEMLTTAGVQIIPKEGVGAPKDFSKVKENDVVILPAFGASLEEMQFLDDKGVRVVDATCPWVSKVWNTVDRHQRMDMTSVIHGKWNHEETIATASFCETYLIMKNEDEAKYVANYIVNGG-DKAEFLEKFKNAMSEGFDPDTDLEKVGLANQTTMYKRETRQIGRIMEKALMSKFGAADIGTRYAEFDTICDATQERQDAITDLIEDGSMDFILIVGGFDS 353          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20405.6735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGB8_ECTSI7.090e-20695.684-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
A0A835ZE64_9STRA2.730e-15171.764-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
W7TLS9_9STRA3.560e-13767.004-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
A0A7S3YXS9_9EUKA1.320e-13064.00Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A067LG21_JATCU7.950e-13062.75Uncharacterized protein n=1 Tax=Jatropha curcas Ta... [more]
K7NBR0_SIRGR6.070e-12964.124-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
B9RZD3_RICCO7.560e-12961.764-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
UPI0019F8A8A79.230e-12962.134-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
A0A7S0MIF1_9CRYP1.510e-12862.25Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A6U4E9P0_9STRA2.320e-12863.37Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20405contigEcto-sp13_S_contig20405:794..3132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score575.1
Seed ortholog evalue1.9e-161
Seed eggNOG ortholog2880.D8LGB8
Preferred nameIDS
Model size903
KEGG rclassRC01137,RC01487
KEGG koko:K03527
KEGG ReactionR05884,R08210
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00096
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046429,GO:0046490,GO:0052592,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576
Exons4
EggNOG free text desc.4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity
EggNOG OGs2QPIQ@2759,COG0761@1
Ec32 ortholog description4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplast precursor
Ec32 orthologEc-06_002680.1
EC1.17.7.4
Cds size882
COG Functional cat.IM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463023.4719465-UTR-Ecto-sp13_S_contig20405:793..8141681463023.4719465-UTR-Ecto-sp13_S_contig20405:793..814Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20405 794..814 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463023.4870727-CDS-Ecto-sp13_S_contig20405:814..9971681463023.4870727-CDS-Ecto-sp13_S_contig20405:814..997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20405 815..997 +
1681463023.4956312-CDS-Ecto-sp13_S_contig20405:1366..14481681463023.4956312-CDS-Ecto-sp13_S_contig20405:1366..1448Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20405 1367..1448 +
1681463023.5080695-CDS-Ecto-sp13_S_contig20405:2000..25511681463023.5080695-CDS-Ecto-sp13_S_contig20405:2000..2551Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20405 2001..2551 +
1681463023.5185835-CDS-Ecto-sp13_S_contig20405:3066..31321681463023.5185835-CDS-Ecto-sp13_S_contig20405:3066..3132Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20405 3067..3132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20405.6735.1prot_Ecto-sp13_S_contig20405.6735.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20405 815..3132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20405.6735.1

>prot_Ecto-sp13_S_contig20405.6735.1 ID=prot_Ecto-sp13_S_contig20405.6735.1|Name=mRNA_Ecto-sp13_S_contig20405.6735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=294bp
MSDEFTSDIISEFKENKGSITRGDTTFKLAEYYGFCWGVERAVAMAFQAR
KHFPDQAMTRLTMHITNELIHNPGVNEKLDEMGVNFVPVSDEGGKDLETI
NDGDVVILPAFGASLEEMQTLDDKNVQVVDTTCPWVSKVWNTVDKHTKAQ
FTSVIHGKWAHEETVATASFCNKYLVVKSMAEAEYVAAYIANGGGDKAEF
MEKFKNAMSEGFDPDVDLVKVGLANQTTMYKRETRDIGKLFEKTLMEKYG
PAKVGEHWMAFDTICDATQERQDAILELVEEEIDLMLVVGGWDS
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mRNA from alignment at Ecto-sp13_S_contig20405:794..3132+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20405.6735.1 ID=mRNA_Ecto-sp13_S_contig20405.6735.1|Name=mRNA_Ecto-sp13_S_contig20405.6735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20405:794..3132+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAGGACGTTTCGGCGCTCATGTCGGACGAGTTCACGAGCGACATCAT CTCGGAGTTCAAGGAAAACAAGGGCAGCATCACGAGGGGTGACACAACCT TCAAGCTCGCCGAGTACTACGGCTTCTGCTGGGGCGTGGAGAGGGCGGTA GCCATGGCCTTCCAGGCCAGAAAGCACTTCCCCGACCAGGCAATGACGAG ATTGGTGGCTCCTTCCCTTCAGACGTCTTTGTGTCAAAAAACGACGCCTC TAAACTTGTGCGCTCTTGTCTCATGCCATCTTGTCTCGAGATCTTCACAC GCAGACTTGAGCGCTGGGGTTTTGCGCATGTCGGGCGAAGTTCCCCTCCT TTCGCACCAGCTGGTCCCCCCAGGAGGATGGTTCCTGTCGTAGTGCAGCG TGCCGGTGGTGGGTAAAAAACCATCACCGGTGCGGTTTTGTGTTCGTGAA TTTCTCCAAACTACGATATGGTTGGCGCGTCAAGTTGGGCGATATCCACT CACGGAAGCGGATGACCGATTTTTTTCCCGGTGTTTGCCTTTCTCCGGTG CCATTTTCTCCCTGCGTTGCCAGACTATGCACATCACGAACGAGCTGATC CATAACCCGGGAGTAAACGAGAAGCTGGATGAAATGGGCGTCAACTTTGT GCCAGGTTTGGGTGACAGTAACCTCTCAGATAGAGTTGTCCACATGCACA TGTCGTCTTTCTCTGGTGTTGACCAACGACAATTATAAAGGCGTTGCCGA AGAGGAGCAACATGCTTGTGGCTGCTGCCGTGTGTATTTCTTTGCTCTGT TGGGCGGCTTTGGCGGCAGCAGTGCCGGTCGGTGGACCGTACGACGGTAC AAAAAGTTTTTGCAAGCCTGACATGATTTAGTTCTCATTTTTTTTGTTCC TGTCGTCAAAAGTGGCGGGCGTTCATTGCTTTTTTTGCTTTGTGGCGCGC GGCGCTTGCGCTTCTCCTGCGAGTAAATGTAACGTTGCTTTGGGATGGTT TGGACGGGTCCCGGAAGAATGGAGAATGTATCCACGACAGCAGTCATTGT TGGCGTTTCTTCTCCTCGTCTCGTCCCACGTGAGGGCATCAAATCCGCCA GATGGTTTTCAGTTTCAGTCTCACCCCCCCCCTCTTGCATTTTCGGCATT GCTCCCCCCCTCCCCCCTTTCTCCCTGCCCCATCGCCCCCTCTCCGGTAA ACCTTAGTGAGCGACGAGGGCGGCAAGGACCTGGAGACGATCAATGACGG AGACGTTGTGATCCTTCCGGCGTTCGGGGCGTCCCTGGAGGAGATGCAGA CGCTCGACGACAAGAATGTGCAAGTGGTAGACACGACCTGCCCCTGGGTG AGCAAGGTGTGGAACACGGTCGACAAGCACACCAAGGCGCAGTTCACCTC GGTGATCCACGGCAAGTGGGCCCACGAGGAGACGGTGGCGACGGCCTCCT TCTGCAACAAGTACCTGGTGGTGAAGAGCATGGCCGAGGCCGAGTACGTT GCCGCGTACATCGCCAACGGGGGCGGCGACAAGGCGGAGTTCATGGAGAA GTTCAAGAACGCCATGTCGGAGGGCTTCGACCCGGACGTGGACCTGGTGA AGGTAGGGCTCGCCAACCAGACGACCATGTACAAGCGCGAGACCCGCGAC ATCGGGAAGCTGTTCGAGAAGACGCTCATGGAGAAGTACGGCCCGGCAAA GGTCGGGGAGCACTGGATGGCGTTCGACACCATCTGCGACGCGACACAGG AGCGGCAGGTCAGACGGGAGGACAGGGATTCGGGCGGCGGTGAACCAGGA AGGGATTGTGGCTTTGGTGACTCAAACGCGTCGGCAGTTTTATGTGGGAG GAGTTGTGATAGCGATGGGGGGGGCGGTTGTTTGCTTTGTAGTTGGGGCT GCTGCTGCTGTGTGTGTTTTGTTGGTCGTTTTGCGGCGATCGGTCACCTG CTCTGTTTGCCTGTGTGCATCGGTCCGGCGTCACATCGAAGGACAAGACT CTGTTCCGTTTCGGTTCGACGTTAGCCGGTACCTCTCGGTGCCTTCACCG GTACCGCTGGCTCGCAGCGCTGGTTCTGTACTGGTGCGAAGCTGTTCGCT GTTGTACACTTTGATGCCGCGAAAGGTCTGTTTCTACTGCGGCTGCCGCC ACTGCTGTGCGTATGCGTTCACATGTATTTCGTTCAGCACACTCATCGTT GTCCTTGCCGTACCGTCTACTGACGCTGCTGCTGCTCCTGCTTCGCGTAC GTACGTGCTTCTACTGCGGACAGGACGCCATCTTGGAGCTGGTGGAGGAA GAGATCGACCTCATGCTGGTCGTGGGAGGGTGGGACTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20405:794..3132+

>mRNA_Ecto-sp13_S_contig20405.6735.1 ID=mRNA_Ecto-sp13_S_contig20405.6735.1|Name=mRNA_Ecto-sp13_S_contig20405.6735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=882bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20405:794..3132+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGACGAGTTCACGAGCGACATCATCTCGGAGTTCAAGGAAAACAA
GGGCAGCATCACGAGGGGTGACACAACCTTCAAGCTCGCCGAGTACTACG
GCTTCTGCTGGGGCGTGGAGAGGGCGGTAGCCATGGCCTTCCAGGCCAGA
AAGCACTTCCCCGACCAGGCAATGACGAGATTGACTATGCACATCACGAA
CGAGCTGATCCATAACCCGGGAGTAAACGAGAAGCTGGATGAAATGGGCG
TCAACTTTGTGCCAGTGAGCGACGAGGGCGGCAAGGACCTGGAGACGATC
AATGACGGAGACGTTGTGATCCTTCCGGCGTTCGGGGCGTCCCTGGAGGA
GATGCAGACGCTCGACGACAAGAATGTGCAAGTGGTAGACACGACCTGCC
CCTGGGTGAGCAAGGTGTGGAACACGGTCGACAAGCACACCAAGGCGCAG
TTCACCTCGGTGATCCACGGCAAGTGGGCCCACGAGGAGACGGTGGCGAC
GGCCTCCTTCTGCAACAAGTACCTGGTGGTGAAGAGCATGGCCGAGGCCG
AGTACGTTGCCGCGTACATCGCCAACGGGGGCGGCGACAAGGCGGAGTTC
ATGGAGAAGTTCAAGAACGCCATGTCGGAGGGCTTCGACCCGGACGTGGA
CCTGGTGAAGGTAGGGCTCGCCAACCAGACGACCATGTACAAGCGCGAGA
CCCGCGACATCGGGAAGCTGTTCGAGAAGACGCTCATGGAGAAGTACGGC
CCGGCAAAGGTCGGGGAGCACTGGATGGCGTTCGACACCATCTGCGACGC
GACACAGGAGCGGCAGGACGCCATCTTGGAGCTGGTGGAGGAAGAGATCG
ACCTCATGCTGGTCGTGGGAGGGTGGGACTCG
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