mRNA_Ecto-sp13_S_contig20404.6734.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig20404.6734.1 vs. uniprot
Match: D7FMM0_ECTSI (DNA repair protein RadA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM0_ECTSI) HSP 1 Score: 172 bits (435), Expect = 1.910e-46 Identity = 92/97 (94.85%), Postives = 93/97 (95.88%), Query Frame = 3
Query: 165 SRRGTRGP-GGDPEFSGLGGGAFGGSGGAGWLPEEGFAAPTLLSEVGEAEKQGRMPLPGTELPRVLGGGLVPGSMVMLGGDPGVGKSTLLLQLAGQL 452
+R G RG GGDPEFSGLGGGAFGGSGGAGWLPEEGFAAPTLLSEVGEAEKQGRMPLPGTELPRVLGGGLVPGSMVMLGGDPGVGKSTLLLQLAGQL
Sbjct: 196 ARGGGRGASGGDPEFSGLGGGAFGGSGGAGWLPEEGFAAPTLLSEVGEAEKQGRMPLPGTELPRVLGGGLVPGSMVMLGGDPGVGKSTLLLQLAGQL 292
BLAST of mRNA_Ecto-sp13_S_contig20404.6734.1 vs. uniprot
Match: A0A836CK68_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK68_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 3.830e-15 Identity = 47/73 (64.38%), Postives = 55/73 (75.34%), Query Frame = 3
Query: 246 AGWLPE--EGFAAPTLLSEVGEAEKQGRMPLPGT-ELPRVLGGGLVPGSMVMLGGDPGVGKSTLLLQLAGQLA 455
AGWL +G+ T L+++ E Q R+ LPG E RVLGGGLVPGSMVM+GGDPGVGKSTLLLQLAG+LA
Sbjct: 177 AGWLVPGADGYGIATRLTDITSEEAQRRVELPGAAEFARVLGGGLVPGSMVMIGGDPGVGKSTLLLQLAGRLA 249
BLAST of mRNA_Ecto-sp13_S_contig20404.6734.1 vs. uniprot
Match: A0A3N6Q4U6_BRACR (Rubredoxin_2 domain-containing protein (Fragment) n=1 Tax=Brassica cretica TaxID=69181 RepID=A0A3N6Q4U6_BRACR) HSP 1 Score: 79.7 bits (195), Expect = 5.000e-15 Identity = 51/95 (53.68%), Postives = 63/95 (66.32%), Query Frame = 3
Query: 168 RRGTRGPGGDPEFSGLGGGAFGGSGGAGWLPEEGFAAPTLLSEV--GEAEKQGRMPLPG---TELPRVLGGGLVPGSMVMLGGDPGVGKSTLLLQ 437
RR + GP + SG GGG+ G G WLPE+G A P LS V G +Q R+ LPG E+ RVLGGGL PGS++++GGDPG+GKSTLLLQ
Sbjct: 131 RRFSEGP--ESRASGRGGGSEGA--GLAWLPEQGVAQPLKLSSVIDGITHQQWRISLPGLFGNEVGRVLGGGLAPGSLILIGGDPGIGKSTLLLQ 221
BLAST of mRNA_Ecto-sp13_S_contig20404.6734.1 vs. uniprot
Match: A0A0D3B7Q9_BRAOL (RECA_2 domain-containing protein n=13 Tax=Brassicaceae TaxID=3700 RepID=A0A0D3B7Q9_BRAOL) HSP 1 Score: 82.0 bits (201), Expect = 6.870e-15 Identity = 57/105 (54.29%), Postives = 69/105 (65.71%), Query Frame = 3
Query: 168 RRGTRGPGGDPEFSGLGG--GAFGGSGGAG--WLPEEGFAAPTLLSEV--GEAEKQGRMPLPG---TELPRVLGGGLVPGSMVMLGGDPGVGKSTLLLQLAGQLA 455
RR + GP + SG GG G GGS GAG WLPE G A P LS V G +Q R+ LPG E+ RVLGGGL PGS++++GGDPG+GKSTLLLQ+A +A
Sbjct: 131 RRFSEGP--ESRASGGGGASGRGGGSEGAGLAWLPEHGVAQPLKLSSVIDGITHQQWRISLPGLFGNEVGRVLGGGLAPGSLILIGGDPGIGKSTLLLQIASIIA 233
BLAST of mRNA_Ecto-sp13_S_contig20404.6734.1 vs. uniprot
Match: A0A5P1FUQ4_ASPOF (Rubredoxin_2 domain-containing protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FUQ4_ASPOF) HSP 1 Score: 74.7 bits (182), Expect = 1.290e-12 Identity = 42/74 (56.76%), Postives = 51/74 (68.92%), Query Frame = 3
Query: 252 WLPEE-GFAAPTLLSEVGEAEKQGRMPLP-----GTELPRVLGGGLVPGSMVMLGGDPGVGKSTLLLQLAGQLA 455
WLP++ G P L EV + KQ +P G E+ RVLGGGLVPGS+V++GGDPGVGKSTLLLQLA +A
Sbjct: 211 WLPQKAGELVPQSLKEVNKERKQSEWRIPLSGHFGMEVSRVLGGGLVPGSLVLVGGDPGVGKSTLLLQLAANIA 284
BLAST of mRNA_Ecto-sp13_S_contig20404.6734.1 vs. uniprot
Match: A0A6D2KRK6_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KRK6_9BRAS) HSP 1 Score: 73.9 bits (180), Expect = 1.900e-12 Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 3
Query: 237 SGGAGWLPEEGFAAPTLLSEV--GEAEKQGRMPLP----GTELPRVLGGGLVPGSMVMLGGDPGVGKSTLLLQLAGQLA 455
S G WLPE+G P LS V G ++Q R+ L G E+ RVLGGGL PGS++++GGDPG+GKSTLLLQ+A +A
Sbjct: 164 SSGLSWLPEQGVVQPLKLSSVIDGITQQQWRISLRPGLFGNEVGRVLGGGLAPGSLILIGGDPGIGKSTLLLQIASIIA 242
BLAST of mRNA_Ecto-sp13_S_contig20404.6734.1 vs. uniprot
Match: A0A1W9U769_9CHLR (DNA repair protein RadA n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A1W9U769_9CHLR) HSP 1 Score: 74.7 bits (182), Expect = 2.130e-12 Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 3
Query: 279 PTLLSEVGEAEKQGRMPLPGTELPRVLGGGLVPGSMVMLGGDPGVGKSTLLLQLAGQLA 455
P L+E+ EAE R+PLP TE RVLGGG+VPGS+V++GGDPG+GKSTLLLQ+AG +A
Sbjct: 55 PRRLTEI-EAEGLDRLPLPLTEFARVLGGGVVPGSLVLVGGDPGIGKSTLLLQVAGLMA 112
BLAST of mRNA_Ecto-sp13_S_contig20404.6734.1 vs. uniprot
Match: A0A0N0RFU1_9CHLR (DNA repair protein RadA n=1 Tax=Ardenticatena maritima TaxID=872965 RepID=A0A0N0RFU1_9CHLR) HSP 1 Score: 74.7 bits (182), Expect = 2.150e-12 Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 3
Query: 279 PTLLSEVGEAEKQGRMPLPGTELPRVLGGGLVPGSMVMLGGDPGVGKSTLLLQLAGQLA 455
P L+EV EAE R+PL E RVLGGG+VPGS+V++GGDPG+GKSTLLLQ+AG+LA
Sbjct: 61 PRRLTEV-EAEAMQRIPLTNREFARVLGGGIVPGSLVLIGGDPGIGKSTLLLQVAGELA 118
BLAST of mRNA_Ecto-sp13_S_contig20404.6734.1 vs. uniprot
Match: V4LMC1_EUTSA (RECA_2 domain-containing protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4LMC1_EUTSA) HSP 1 Score: 74.7 bits (182), Expect = 2.360e-12 Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 3
Query: 243 GAGWLPEEGFAAPTLLSEV--GEAEKQGRMPLPG---TELPRVLGGGLVPGSMVMLGGDPGVGKSTLLLQLAGQLA 455
G WLPE+ P LS V G ++Q R+ LPG E+ RVLGGGL PGS++++GGDPG+GKSTLLLQ+A +A
Sbjct: 164 GLSWLPEQAVVQPLKLSSVIDGITQQQWRISLPGLFGNEVGRVLGGGLAPGSLILIGGDPGIGKSTLLLQIASIIA 239
BLAST of mRNA_Ecto-sp13_S_contig20404.6734.1 vs. uniprot
Match: A0A830D399_9LAMI (DNA repair protein rada homolog n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830D399_9LAMI) HSP 1 Score: 73.6 bits (179), Expect = 2.550e-12 Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = 3
Query: 252 WLPEEGFAAPTLLSEVGEA--EKQGRMPLPGT---ELPRVLGGGLVPGSMVMLGGDPGVGKSTLLLQLAGQLA 455
WLP+E + P LS+V E R+PLPG E+ RVLGGGLVPGS+V++GGDPG+GKSTLLLQ+A +A
Sbjct: 79 WLPKE--SMPIRLSDVSNRIDESNWRIPLPGVFGAEVERVLGGGLVPGSLVLVGGDPGIGKSTLLLQIAALIA 149 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20404.6734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig20404.6734.1 >prot_Ecto-sp13_S_contig20404.6734.1 ID=prot_Ecto-sp13_S_contig20404.6734.1|Name=mRNA_Ecto-sp13_S_contig20404.6734.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=130bp VYVCEVCGSEHVQWVGRCPTCKEWNCVKPFKVRREQGSSPSRVSRAAAASback to top mRNA from alignment at Ecto-sp13_S_contig20404:29..3129+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig20404.6734.1 ID=mRNA_Ecto-sp13_S_contig20404.6734.1|Name=mRNA_Ecto-sp13_S_contig20404.6734.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3101bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20404:29..3129+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20404:29..3129+ >mRNA_Ecto-sp13_S_contig20404.6734.1 ID=mRNA_Ecto-sp13_S_contig20404.6734.1|Name=mRNA_Ecto-sp13_S_contig20404.6734.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20404:29..3129+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |