mRNA_Ecto-sp13_S_contig2039.6731.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE) HSP 1 Score: 389 bits (998), Expect = 3.500e-122 Identity = 199/241 (82.57%), Postives = 210/241 (87.14%), Query Frame = 1
Query: 643 TSTGEEPTQFEACT--FDYNSAVDGGALYMSTNEGMEVVRNCTFYGNQA---------------------EISGGTIFHTGYLGMIETVFASNKAGQDGTAVFSIGVVQEALNVTFASNTLHCPLGEYAYDKEAEDNSCRFELACARCSADCEAIPSSVTMADSTIPVCVELMEGTQASSSGTTVATLDLREGYYRTSAESQVVVECYLTSACVGGTDPENYCADGYEGPYCSVCADGYAP 1296
TSTGEEPTQFEACT FD NSAVDGGALYMSTN GMEVVRNC FYGN+A EISGGTIFHTG+LGMIETVFASN+AGQDGTAVFS+GVVQ+ALNV FASNTL+CP GE AYDKEAED+SCRFELACARCSADC+AIPSSVTMADSTIPVCVE MEGT+ASSSGTTVATLDL+EGYYRTSAESQVVVECYLTSAC GGTDP+NYCADGYEGPYCSVCADGYAP
Sbjct: 397 TSTGEEPTQFEACTCTFDSNSAVDGGALYMSTNGGMEVVRNCNFYGNRAGESIERKASRTDDVQAALQRVEISGGTIFHTGHLGMIETVFASNEAGQDGTAVFSMGVVQKALNVAFASNTLNCPPGENAYDKEAEDDSCRFELACARCSADCDAIPSSVTMADSTIPVCVESMEGTKASSSGTTVATLDLQEGYYRTSAESQVVVECYLTSACAGGTDPKNYCADGYEGPYCSVCADGYAP 637
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Match: D7FWD7_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD7_ECTSI) HSP 1 Score: 375 bits (962), Expect = 2.210e-119 Identity = 313/395 (79.24%), Postives = 321/395 (81.27%), Query Frame = 1
Query: 112 SALHRFATVLIREGAIRGSFSNFTVDDAVRFTNNTSVNNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASVCVIIIDGDATFHGNLAEDXXAIFLYQAVAHLRGGSFSENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTGEEPTQFEACTFDYNSAVDGGALYMSTNEGMEVVRNCTFYGNQAEISGGTIFHTGYLGMIETVFASNKAGQDGTAVFSIGVVQEALNVTFASNTLHCPLGEYAYDKEAEDNSCRFELACARCSADCEAIPSSVTMADSTIPVCVELMEGTQASSSGTTVATLDLREGYYRTSAESQVVVECYLTSACVGGTDPENYCADGYEGPYCSVCADGYAP 1296
S LHRFA VLIREGAIRGSFSNFTVDDAVRFTNNTSV NGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SVCVI XX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX STGEEPTQFEACT AEISGGTIFHTGYLGMIETVFASN+AGQDGTAVFSIGVVQ+ALNVTFASNTL+CPLGEYAYDKEAED+SCRFELACARCSADC+AIPSSVTMADSTIPVC+ELMEGT+ASSSGTTVATLDL+EGYYRTSAESQVVVECYLT AC GGTDPENYCADGYEGPYCSVCADGYAP
Sbjct: 2 SILHRFAPVLIREGAIRGSFSNFTVDDAVRFTNNTSVKNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVCVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGEEPTQFEACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEISGGTIFHTGYLGMIETVFASNEAGQDGTAVFSIGVVQQALNVTFASNTLNCPLGEYAYDKEAEDDSCRFELACARCSADCDAIPSSVTMADSTIPVCLELMEGTKASSSGTTVATLDLQEGYYRTSAESQVVVECYLTGACAGGTDPENYCADGYEGPYCSVCADGYAP 396
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Match: D7FUB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB6_ECTSI) HSP 1 Score: 152 bits (384), Expect = 1.060e-37 Identity = 86/225 (38.22%), Postives = 126/225 (56.00%), Query Frame = 1
Query: 652 GEEPTQFEACTFDYNSAVDGGALYMSTNEGMEVVRNCTFYGNQAEISGGTIFHTGYL-GMIETVFASNKAGQDGTAVFSIGVVQEALNVTFASNTLHCPLGEYAYDKEAED----NSCRFELACARC-SADCE---AIPSSVT-MADSTIPVCVELMEGTQAS-SSGTTVATLDLREGYYRTSAESQVVVECYLTSACVGGTDPENYCADGYEGPYCSVCADGYA 1293
G P AC F+ NSA DGGA Y + G ++V++C+F N A +SGG + H+G L G+ + + +VTFA NT +C G+Y D D ++CR E+ C+RC S+ CE + + ++ + D+ +P C + G S ++GTT+ TLDL GYYRTSAES +++EC+ ACVGG+ YCA GY+G YC+ C +GYA
Sbjct: 220 GSGPVNTTACVFERNSADDGGAFYSAA--GYDLVQDCSFQANFAALSGGALLHSGVLVGVHXXXXXXXXXXXXXXXXXXXXIAENFTDVTFAENTFYCAPGQYGSDAHFLDEEVADTCRLEVVCSRCVSSPCEDDDMLDNGISVLEDNVVPHCKAVAVGVNVSGNAGTTLQTLDLESGYYRTSAESDIILECHREEACVGGSTAGEYCATGYQGAYCAACEEGYA 442
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 122 bits (306), Expect = 3.970e-26 Identity = 73/217 (33.64%), Postives = 108/217 (49.77%), Query Frame = 1
Query: 649 TGEEPTQFEACTFDYNSAVD-GGALYMSTNEGMEVVRNCTFYGNQAEISGGTIFHTGYLGMIETVFASNKAGQ-DGTAVFSIGVVQEALNVTFASNTLHCPLGEYAYDKEAEDNSCRFELACARCSADCEAIPSSVTMADSTIPVCVELMEGTQASSSGTTVATLDLREGYYRTSAESQVVVECYLTSACVGG-TDPENYCADGYEGPYCSVCADGY 1290
+G+ PT F+ C F N A+ GGA+ + E + + N F GN A +GG + G + F N + + +G AV +IG + N +F N CP G + + D+ FE C C C+ V S P+C E+M+ + + T+ TL + G++R S S V+ CY AC+GG T YC +GYEGPYC +C+DGY
Sbjct: 899 SGDLPTTFDTCQFIGNQAISTGGAINSAAGE--DAIENSVFEGNSAG-TGGALRLAGEAYISNCSFRENTSDEGEGAAVSNIGFISSITNASFDGNGFDCPAGTFRNVTGSVDH---FEAICNGCETTCD---GCVFAEGSLAPICTEVMDHSTSDGGNVTLQTLSIDRGFWRASTSSTEVLACYHADACLGGVTGASGYCEEGYEGPYCGICSDGY 1106
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 113 bits (282), Expect = 4.630e-23 Identity = 72/213 (33.80%), Postives = 105/213 (49.30%), Query Frame = 1
Query: 661 PTQFEACTFDYNSAVDGGALYMSTNEGMEVVRNCTFYGNQAEISGGTIFHTGYLGMIETVFASNKAG-QDGTAVFSIGVVQEALNVTFASNTLHCPLGEYAYDKEAEDNSCRFELACARCSADCEAIPSSVTMADSTIPVCVELMEGTQASSSGTTVATLDLREGYYRTSAESQVVVECYLTSACVGG-TDPENYCADGYEGPYCSVCADGYA 1293
PT+F+ C F N A G S G ++V N F GN AE+ GG + G +G Q+G AV +IG+V N +F N C + + +A DN FE C C C+ A +P C ++M+ ++ T+ TL + GY+R ++ S+ ++ CY AC+GG T YC + YEGPYCS+C+DGYA
Sbjct: 819 PTKFDRCRFIDNVATTSGGAVDSA-AGQDIVVNSVFKGNSAEV-GGALRLAGXXXXXXXXXXXXVSGRQEGAAVSNIGLVSTMANSSFTGNGFTCG-PDLFLEYDATDNG-TFEAVCDGCRVACDGCSFDEPPA---VPTCSDVMDHGTSTGGKVTLETLSIDPGYWRATSSSKEILPCYNADACLGGVTGTAGYCLESYEGPYCSICSDGYA 1024
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI) HSP 1 Score: 111 bits (278), Expect = 1.550e-22 Identity = 72/219 (32.88%), Postives = 104/219 (47.49%), Query Frame = 1
Query: 646 STGEEPTQFEACTF-DYNSAVDGGALYMSTNEGMEVVRNCTFYGNQAEISGGTIFHTGYLGMIETVFASNKAGQ-DGTAVFSIGVVQEALNVTFASNTLHCPLGEYAYDKEAEDNSCRFELACARCSADCEAIPSSVTMADSTIPVCVELMEGTQASSSGTTVATLDLREGYYRTSAESQVVVECYLTSACVGG-TDPENYCADGYEGPYCSVCADGYA 1293
S G+ PT F+ C F D A GGA+ + G + F GN A +GG + G F N A + +G AV +IG + + F+ N C Y + D+ FE+ C+ C CE + +P C E+ME + T+ L + GY+R + S+ V+ CY AC+GG T YC +GYEGPYCSVC++GY+
Sbjct: 1008 SGGDNPTTFDRCRFVDNQGASTGGAIESAA--GKDAFNGSIFEGNSAG-TGGALRLAGAAYFFNCSFVGNTADEGEGAAVSNIGYISAVESNFFSGNRFDCRSSMYLDFIQQSDDP--FEVMCSGCEVTCEGCVFDEGLL---VPACTEVMEHATSDGGNITLEALSIDSGYWRATESSEDVLACYHAEACLGGVTATSGYCLEGYEGPYCSVCSNGYS 1218
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 111 bits (277), Expect = 2.090e-22 Identity = 71/215 (33.02%), Postives = 109/215 (50.70%), Query Frame = 1
Query: 661 PTQFEACTFDYNSAV-DGGALYMSTNEGMEVVRNCTFYGNQAEISGGTIFHTGYLGMIETVFASNKAGQDG-TAVFSIGVVQEALNVTFASNTLHCPLGEY-AYDKEAEDNSCRFELACARCSADCEAIPSSVTMADSTIPVCVELMEGTQASSSGTTVATLDLREGYYRTSAESQVVVECYLTSACVGG-TDPENYCADGYEGPYCSVCADGYA 1293
PT FE C F N A GGA+ + G + + TF N A +GG + G + F N + +G AV +IG V+ N++F++N CP G + Y+ A+ FE C C C + + +P C +L+E + +S T+ TL ++ GY+R + V+ CY AC+GG T YC +GYEGPYC++C++GY+
Sbjct: 1004 PTTFERCWFVGNRATATGGAI--DSAAGHDYFVDTTFEDNAAG-TGGALRLAGTASINSCSFVENFSDDEGGAAVSNIGTVESTENISFSANGFDCPSGTFLGYNASAD----LFEAVCNGCQTACVGCAFADPLL---VPTCTDLLEHSTSSDGRDTLETLSIQAGYWRATTSGTEVLACYHADACLGGVTGTSGYCLEGYEGPYCAICSEGYS 1208
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE) HSP 1 Score: 110 bits (276), Expect = 2.840e-22 Identity = 72/213 (33.80%), Postives = 108/213 (50.70%), Query Frame = 1
Query: 661 PTQFEACTF-DYNSAVDGGALYMSTNEGMEVVRNCTFYGNQAEISGGTIFHTGYLGMIETVFASNKAGQDGTAVFSIGVVQEALNVTFASNTLHCPLGEYAYDKEAEDNSCRFELACARCSADCEAIPSSVTMADSTIPVCVELMEGTQASSSGTTVATLDLREGYYRTSAESQVVVECYLTSACVGG-TDPENYCADGYEGPYCSVCADGYA 1293
P ++ C F D ++V GGA+ T G + N F N A + GG + G + F N A +G AV ++GV+ F+ N L C G Y + + R++ C C + SV D +P+CV ++ T++ TT+ TL+L GY+R + +S V+ CY ACVGG T+ +C GYEGPYCSVC++GY+
Sbjct: 1168 PVGYKDCLFRDNEASVTGGAI--ETAAGYDFAINSVFEANAAGV-GGALRLGGSAILTNCTFIDNTAEDEGPAVSNLGVLDLEGTSRFSGNVLSCENGMYLDSVDGD----RYQTVCDGCPVNNSDWIVSVENGDR-VPICVVQLDHTRSEGGDTTIETLELSSGYWRATNDSANVLACYNEDACVGGMTNDPAFCQRGYEGPYCSVCSEGYS 1372
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE) HSP 1 Score: 106 bits (265), Expect = 6.830e-21 Identity = 66/212 (31.13%), Postives = 97/212 (45.75%), Query Frame = 1
Query: 661 PTQFEACTFDYNSAVDGGALYMSTNEGMEVVRNCTFYGNQAEISGGTIFHTGYLGMIETVFASNKAGQDGTAVFSIGVVQEALNVTFASNTLHCPLGEYAYDKEAEDNSCRFELACARCSADCEAIPSSVTMADSTIPVCVELMEGTQASSSGTTVATLDLREGYYRTSAESQVVVECYLTSACVGG-TDPENYCADGYEGPYCSVCADGYA 1293
PT+F C F N A G S G ++V N F GN AE+ G Q+G AV +IG+V N +F N C + + D + FE C C C+ A +P C ++M+ + + T+ TL + GY+R ++ S+ ++ CY AC+GG T YC + YEGPYCS+C++GYA
Sbjct: 879 PTKFNRCRFIDNVATASGGAVDSA-AGQDIVVNSVFKGNSAEVGGALRXXXXXXXXXXXXXXXVSGHQEGAAVSNIGLVSTMANSSFTGNGFTCGPDLFLEFDTSGDGT--FEAVCDGCRVACDGCSFDEQPA---VPTCSDVMDHSTSPGGNVTLETLLIDPGYWRATSSSKKILPCYNADACLGGVTGTAGYCLESYEGPYCSICSNGYA 1084
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI) HSP 1 Score: 104 bits (259), Expect = 4.140e-20 Identity = 53/125 (42.40%), Postives = 79/125 (63.20%), Query Frame = 1
Query: 931 TLHCPLGEYAYDKEAE-DNSCRFELACARCSADCEA-IPSSVTMAD-STIPVCVELMEGTQASSSGTTVATLDLREGYYRTSAESQVVVECYLTSACVGGTDPENYCADGYEGPYCSVCADGYAP 1296
+ +C G ++ + E E ++ CRF L C+RC+++C + + VT+AD +P C + EG Q +S G T+ATL++ GYYR+SA S + EC+ AC GG YCA GY GPYC+VC G++P
Sbjct: 526 SFYCEEGTFSTEVEIEGEDVCRFGLVCSRCASECASELEDEVTVADPDLLPACEAVPEGAQTTSRGGTLATLEILPGYYRSSATSTDIRECFYEDACEGGKVVGEYCAAGYTGPYCAVCTAGFSP 650 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig2039.6731.1 >prot_Ecto-sp13_S_contig2039.6731.1 ID=prot_Ecto-sp13_S_contig2039.6731.1|Name=mRNA_Ecto-sp13_S_contig2039.6731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=247bp MSISQPTEVTLYGVLFVSNTADIGGAIALTSTGEEPTQFEACTFDYNSAVback to top mRNA from alignment at Ecto-sp13_S_contig2039:10747..14913+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig2039.6731.1 ID=mRNA_Ecto-sp13_S_contig2039.6731.1|Name=mRNA_Ecto-sp13_S_contig2039.6731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4167bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2039:10747..14913+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2039:10747..14913+ >mRNA_Ecto-sp13_S_contig2039.6731.1 ID=mRNA_Ecto-sp13_S_contig2039.6731.1|Name=mRNA_Ecto-sp13_S_contig2039.6731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2039:10747..14913+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |