mRNA_Ecto-sp13_S_contig2039.6731.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2039.6731.1
Unique NamemRNA_Ecto-sp13_S_contig2039.6731.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE)

HSP 1 Score: 389 bits (998), Expect = 3.500e-122
Identity = 199/241 (82.57%), Postives = 210/241 (87.14%), Query Frame = 1
Query:  643 TSTGEEPTQFEACT--FDYNSAVDGGALYMSTNEGMEVVRNCTFYGNQA---------------------EISGGTIFHTGYLGMIETVFASNKAGQDGTAVFSIGVVQEALNVTFASNTLHCPLGEYAYDKEAEDNSCRFELACARCSADCEAIPSSVTMADSTIPVCVELMEGTQASSSGTTVATLDLREGYYRTSAESQVVVECYLTSACVGGTDPENYCADGYEGPYCSVCADGYAP 1296
            TSTGEEPTQFEACT  FD NSAVDGGALYMSTN GMEVVRNC FYGN+A                     EISGGTIFHTG+LGMIETVFASN+AGQDGTAVFS+GVVQ+ALNV FASNTL+CP GE AYDKEAED+SCRFELACARCSADC+AIPSSVTMADSTIPVCVE MEGT+ASSSGTTVATLDL+EGYYRTSAESQVVVECYLTSAC GGTDP+NYCADGYEGPYCSVCADGYAP
Sbjct:  397 TSTGEEPTQFEACTCTFDSNSAVDGGALYMSTNGGMEVVRNCNFYGNRAGESIERKASRTDDVQAALQRVEISGGTIFHTGHLGMIETVFASNEAGQDGTAVFSMGVVQKALNVAFASNTLNCPPGENAYDKEAEDDSCRFELACARCSADCDAIPSSVTMADSTIPVCVESMEGTKASSSGTTVATLDLQEGYYRTSAESQVVVECYLTSACAGGTDPKNYCADGYEGPYCSVCADGYAP 637          
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Match: D7FWD7_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD7_ECTSI)

HSP 1 Score: 375 bits (962), Expect = 2.210e-119
Identity = 313/395 (79.24%), Postives = 321/395 (81.27%), Query Frame = 1
Query:  112 SALHRFATVLIREGAIRGSFSNFTVDDAVRFTNNTSVNNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASVCVIIIDGDATFHGNLAEDXXAIFLYQAVAHLRGGSFSENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTGEEPTQFEACTFDYNSAVDGGALYMSTNEGMEVVRNCTFYGNQAEISGGTIFHTGYLGMIETVFASNKAGQDGTAVFSIGVVQEALNVTFASNTLHCPLGEYAYDKEAEDNSCRFELACARCSADCEAIPSSVTMADSTIPVCVELMEGTQASSSGTTVATLDLREGYYRTSAESQVVVECYLTSACVGGTDPENYCADGYEGPYCSVCADGYAP 1296
            S LHRFA VLIREGAIRGSFSNFTVDDAVRFTNNTSV NGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  SVCVI               XX                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX STGEEPTQFEACT                                AEISGGTIFHTGYLGMIETVFASN+AGQDGTAVFSIGVVQ+ALNVTFASNTL+CPLGEYAYDKEAED+SCRFELACARCSADC+AIPSSVTMADSTIPVC+ELMEGT+ASSSGTTVATLDL+EGYYRTSAESQVVVECYLT AC GGTDPENYCADGYEGPYCSVCADGYAP
Sbjct:    2 SILHRFAPVLIREGAIRGSFSNFTVDDAVRFTNNTSVKNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVCVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGEEPTQFEACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEISGGTIFHTGYLGMIETVFASNEAGQDGTAVFSIGVVQQALNVTFASNTLNCPLGEYAYDKEAEDDSCRFELACARCSADCDAIPSSVTMADSTIPVCLELMEGTKASSSGTTVATLDLQEGYYRTSAESQVVVECYLTGACAGGTDPENYCADGYEGPYCSVCADGYAP 396          
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Match: D7FUB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB6_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 1.060e-37
Identity = 86/225 (38.22%), Postives = 126/225 (56.00%), Query Frame = 1
Query:  652 GEEPTQFEACTFDYNSAVDGGALYMSTNEGMEVVRNCTFYGNQAEISGGTIFHTGYL-GMIETVFASNKAGQDGTAVFSIGVVQEALNVTFASNTLHCPLGEYAYDKEAED----NSCRFELACARC-SADCE---AIPSSVT-MADSTIPVCVELMEGTQAS-SSGTTVATLDLREGYYRTSAESQVVVECYLTSACVGGTDPENYCADGYEGPYCSVCADGYA 1293
            G  P    AC F+ NSA DGGA Y +   G ++V++C+F  N A +SGG + H+G L G+                     + +   +VTFA NT +C  G+Y  D    D    ++CR E+ C+RC S+ CE    + + ++ + D+ +P C  +  G   S ++GTT+ TLDL  GYYRTSAES +++EC+   ACVGG+    YCA GY+G YC+ C +GYA
Sbjct:  220 GSGPVNTTACVFERNSADDGGAFYSAA--GYDLVQDCSFQANFAALSGGALLHSGVLVGVHXXXXXXXXXXXXXXXXXXXXIAENFTDVTFAENTFYCAPGQYGSDAHFLDEEVADTCRLEVVCSRCVSSPCEDDDMLDNGISVLEDNVVPHCKAVAVGVNVSGNAGTTLQTLDLESGYYRTSAESDIILECHREEACVGGSTAGEYCATGYQGAYCAACEEGYA 442          
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 3.970e-26
Identity = 73/217 (33.64%), Postives = 108/217 (49.77%), Query Frame = 1
Query:  649 TGEEPTQFEACTFDYNSAVD-GGALYMSTNEGMEVVRNCTFYGNQAEISGGTIFHTGYLGMIETVFASNKAGQ-DGTAVFSIGVVQEALNVTFASNTLHCPLGEYAYDKEAEDNSCRFELACARCSADCEAIPSSVTMADSTIPVCVELMEGTQASSSGTTVATLDLREGYYRTSAESQVVVECYLTSACVGG-TDPENYCADGYEGPYCSVCADGY 1290
            +G+ PT F+ C F  N A+  GGA+  +  E  + + N  F GN A  +GG +   G   +    F  N + + +G AV +IG +    N +F  N   CP G +     + D+   FE  C  C   C+     V    S  P+C E+M+ + +     T+ TL +  G++R S  S  V+ CY   AC+GG T    YC +GYEGPYC +C+DGY
Sbjct:  899 SGDLPTTFDTCQFIGNQAISTGGAINSAAGE--DAIENSVFEGNSAG-TGGALRLAGEAYISNCSFRENTSDEGEGAAVSNIGFISSITNASFDGNGFDCPAGTFRNVTGSVDH---FEAICNGCETTCD---GCVFAEGSLAPICTEVMDHSTSDGGNVTLQTLSIDRGFWRASTSSTEVLACYHADACLGGVTGASGYCEEGYEGPYCGICSDGY 1106          
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 4.630e-23
Identity = 72/213 (33.80%), Postives = 105/213 (49.30%), Query Frame = 1
Query:  661 PTQFEACTFDYNSAVDGGALYMSTNEGMEVVRNCTFYGNQAEISGGTIFHTGYLGMIETVFASNKAG-QDGTAVFSIGVVQEALNVTFASNTLHCPLGEYAYDKEAEDNSCRFELACARCSADCEAIPSSVTMADSTIPVCVELMEGTQASSSGTTVATLDLREGYYRTSAESQVVVECYLTSACVGG-TDPENYCADGYEGPYCSVCADGYA 1293
            PT+F+ C F  N A   G    S   G ++V N  F GN AE+ GG +   G             +G Q+G AV +IG+V    N +F  N   C   +   + +A DN   FE  C  C   C+        A   +P C ++M+   ++    T+ TL +  GY+R ++ S+ ++ CY   AC+GG T    YC + YEGPYCS+C+DGYA
Sbjct:  819 PTKFDRCRFIDNVATTSGGAVDSA-AGQDIVVNSVFKGNSAEV-GGALRLAGXXXXXXXXXXXXVSGRQEGAAVSNIGLVSTMANSSFTGNGFTCG-PDLFLEYDATDNG-TFEAVCDGCRVACDGCSFDEPPA---VPTCSDVMDHGTSTGGKVTLETLSIDPGYWRATSSSKEILPCYNADACLGGVTGTAGYCLESYEGPYCSICSDGYA 1024          
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.550e-22
Identity = 72/219 (32.88%), Postives = 104/219 (47.49%), Query Frame = 1
Query:  646 STGEEPTQFEACTF-DYNSAVDGGALYMSTNEGMEVVRNCTFYGNQAEISGGTIFHTGYLGMIETVFASNKAGQ-DGTAVFSIGVVQEALNVTFASNTLHCPLGEYAYDKEAEDNSCRFELACARCSADCEAIPSSVTMADSTIPVCVELMEGTQASSSGTTVATLDLREGYYRTSAESQVVVECYLTSACVGG-TDPENYCADGYEGPYCSVCADGYA 1293
            S G+ PT F+ C F D   A  GGA+  +   G +      F GN A  +GG +   G        F  N A + +G AV +IG +    +  F+ N   C    Y    +  D+   FE+ C+ C   CE       +    +P C E+ME   +     T+  L +  GY+R +  S+ V+ CY   AC+GG T    YC +GYEGPYCSVC++GY+
Sbjct: 1008 SGGDNPTTFDRCRFVDNQGASTGGAIESAA--GKDAFNGSIFEGNSAG-TGGALRLAGAAYFFNCSFVGNTADEGEGAAVSNIGYISAVESNFFSGNRFDCRSSMYLDFIQQSDDP--FEVMCSGCEVTCEGCVFDEGLL---VPACTEVMEHATSDGGNITLEALSIDSGYWRATESSEDVLACYHAEACLGGVTATSGYCLEGYEGPYCSVCSNGYS 1218          
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 2.090e-22
Identity = 71/215 (33.02%), Postives = 109/215 (50.70%), Query Frame = 1
Query:  661 PTQFEACTFDYNSAV-DGGALYMSTNEGMEVVRNCTFYGNQAEISGGTIFHTGYLGMIETVFASNKAGQDG-TAVFSIGVVQEALNVTFASNTLHCPLGEY-AYDKEAEDNSCRFELACARCSADCEAIPSSVTMADSTIPVCVELMEGTQASSSGTTVATLDLREGYYRTSAESQVVVECYLTSACVGG-TDPENYCADGYEGPYCSVCADGYA 1293
            PT FE C F  N A   GGA+   +  G +   + TF  N A  +GG +   G   +    F  N +  +G  AV +IG V+   N++F++N   CP G +  Y+  A+     FE  C  C   C     +  +    +P C +L+E + +S    T+ TL ++ GY+R +     V+ CY   AC+GG T    YC +GYEGPYC++C++GY+
Sbjct: 1004 PTTFERCWFVGNRATATGGAI--DSAAGHDYFVDTTFEDNAAG-TGGALRLAGTASINSCSFVENFSDDEGGAAVSNIGTVESTENISFSANGFDCPSGTFLGYNASAD----LFEAVCNGCQTACVGCAFADPLL---VPTCTDLLEHSTSSDGRDTLETLSIQAGYWRATTSGTEVLACYHADACLGGVTGTSGYCLEGYEGPYCAICSEGYS 1208          
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 2.840e-22
Identity = 72/213 (33.80%), Postives = 108/213 (50.70%), Query Frame = 1
Query:  661 PTQFEACTF-DYNSAVDGGALYMSTNEGMEVVRNCTFYGNQAEISGGTIFHTGYLGMIETVFASNKAGQDGTAVFSIGVVQEALNVTFASNTLHCPLGEYAYDKEAEDNSCRFELACARCSADCEAIPSSVTMADSTIPVCVELMEGTQASSSGTTVATLDLREGYYRTSAESQVVVECYLTSACVGG-TDPENYCADGYEGPYCSVCADGYA 1293
            P  ++ C F D  ++V GGA+   T  G +   N  F  N A + GG +   G   +    F  N A  +G AV ++GV+       F+ N L C  G Y    + +    R++  C  C  +      SV   D  +P+CV  ++ T++    TT+ TL+L  GY+R + +S  V+ CY   ACVGG T+   +C  GYEGPYCSVC++GY+
Sbjct: 1168 PVGYKDCLFRDNEASVTGGAI--ETAAGYDFAINSVFEANAAGV-GGALRLGGSAILTNCTFIDNTAEDEGPAVSNLGVLDLEGTSRFSGNVLSCENGMYLDSVDGD----RYQTVCDGCPVNNSDWIVSVENGDR-VPICVVQLDHTRSEGGDTTIETLELSSGYWRATNDSANVLACYNEDACVGGMTNDPAFCQRGYEGPYCSVCSEGYS 1372          
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 6.830e-21
Identity = 66/212 (31.13%), Postives = 97/212 (45.75%), Query Frame = 1
Query:  661 PTQFEACTFDYNSAVDGGALYMSTNEGMEVVRNCTFYGNQAEISGGTIFHTGYLGMIETVFASNKAGQDGTAVFSIGVVQEALNVTFASNTLHCPLGEYAYDKEAEDNSCRFELACARCSADCEAIPSSVTMADSTIPVCVELMEGTQASSSGTTVATLDLREGYYRTSAESQVVVECYLTSACVGG-TDPENYCADGYEGPYCSVCADGYA 1293
            PT+F  C F  N A   G    S   G ++V N  F GN AE+ G                      Q+G AV +IG+V    N +F  N   C    +     + D +  FE  C  C   C+        A   +P C ++M+ + +     T+ TL +  GY+R ++ S+ ++ CY   AC+GG T    YC + YEGPYCS+C++GYA
Sbjct:  879 PTKFNRCRFIDNVATASGGAVDSA-AGQDIVVNSVFKGNSAEVGGALRXXXXXXXXXXXXXXXVSGHQEGAAVSNIGLVSTMANSSFTGNGFTCGPDLFLEFDTSGDGT--FEAVCDGCRVACDGCSFDEQPA---VPTCSDVMDHSTSPGGNVTLETLLIDPGYWRATSSSKKILPCYNADACLGGVTGTAGYCLESYEGPYCSICSNGYA 1084          
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 4.140e-20
Identity = 53/125 (42.40%), Postives = 79/125 (63.20%), Query Frame = 1
Query:  931 TLHCPLGEYAYDKEAE-DNSCRFELACARCSADCEA-IPSSVTMAD-STIPVCVELMEGTQASSSGTTVATLDLREGYYRTSAESQVVVECYLTSACVGGTDPENYCADGYEGPYCSVCADGYAP 1296
            + +C  G ++ + E E ++ CRF L C+RC+++C + +   VT+AD   +P C  + EG Q +S G T+ATL++  GYYR+SA S  + EC+   AC GG     YCA GY GPYC+VC  G++P
Sbjct:  526 SFYCEEGTFSTEVEIEGEDVCRFGLVCSRCASECASELEDEVTVADPDLLPACEAVPEGAQTTSRGGTLATLEILPGYYRSSATSTDIRECFYEDACEGGKVVGEYCAAGYTGPYCAVCTAGFSP 650          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2039.6731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSF5_9PHAE3.500e-12282.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWD7_ECTSI2.210e-11979.24Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FUB6_ECTSI1.060e-3738.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0E9_9PHAE3.970e-2633.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G2X5_ECTSI4.630e-2333.80Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7FTI5_ECTSI1.550e-2232.88Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D8LSC0_ECTSI2.090e-2233.02Polymorphic Outer membrane protein G/I family n=3 ... [more]
A0A6H5JY65_9PHAE2.840e-2233.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z1_9PHAE6.830e-2131.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTU5_ECTSI4.140e-2042.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2039contigEcto-sp13_S_contig2039:10747..14913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score131.3
Seed ortholog evalue6e-28
Seed eggNOG ortholog2880.D7G2Z8
Model size1296
Hectar predicted targeting categoryother localisation
Exons8
EggNOG OGs2BFIX@1,2S176@2759
Cds size741
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2039.6731.1prot_Ecto-sp13_S_contig2039.6731.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2039 13373..14913 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463022.976917-UTR-Ecto-sp13_S_contig2039:10746..109781681463022.976917-UTR-Ecto-sp13_S_contig2039:10746..10978Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2039 10747..10978 +
1681463022.9888668-UTR-Ecto-sp13_S_contig2039:11403..114841681463022.9888668-UTR-Ecto-sp13_S_contig2039:11403..11484Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2039 11404..11484 +
1681463023.0048652-UTR-Ecto-sp13_S_contig2039:12141..122221681463023.0048652-UTR-Ecto-sp13_S_contig2039:12141..12222Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2039 12142..12222 +
1681463023.0165303-UTR-Ecto-sp13_S_contig2039:12790..128681681463023.0165303-UTR-Ecto-sp13_S_contig2039:12790..12868Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2039 12791..12868 +
1681463023.0265226-UTR-Ecto-sp13_S_contig2039:13289..133721681463023.0265226-UTR-Ecto-sp13_S_contig2039:13289..13372Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2039 13290..13372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463023.0367832-CDS-Ecto-sp13_S_contig2039:13372..136011681463023.0367832-CDS-Ecto-sp13_S_contig2039:13372..13601Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2039 13373..13601 +
1681463023.050239-CDS-Ecto-sp13_S_contig2039:13954..141421681463023.050239-CDS-Ecto-sp13_S_contig2039:13954..14142Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2039 13955..14142 +
1681463023.0657778-CDS-Ecto-sp13_S_contig2039:14433..147251681463023.0657778-CDS-Ecto-sp13_S_contig2039:14433..14725Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2039 14434..14725 +
1681463023.0760899-CDS-Ecto-sp13_S_contig2039:14881..149131681463023.0760899-CDS-Ecto-sp13_S_contig2039:14881..14913Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2039 14882..14913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2039.6731.1

>prot_Ecto-sp13_S_contig2039.6731.1 ID=prot_Ecto-sp13_S_contig2039.6731.1|Name=mRNA_Ecto-sp13_S_contig2039.6731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=247bp
MSISQPTEVTLYGVLFVSNTADIGGAIALTSTGEEPTQFEACTFDYNSAV
DGGALYMSTNEGMEVVRNCTFYGNQAEISGGTIFHTGYLGMIETVFASNK
AGQDGTAVFSIGVVQEALNVTFASNTLHCPLGEYAYDKEAEDNSCRFELA
CARCSADCEAIPSSVTMADSTIPVCVELMEGTQASSSGTTVATLDLREGY
YRTSAESQVVVECYLTSACVGGTDPENYCADGYEGPYCSVCADGYAP
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mRNA from alignment at Ecto-sp13_S_contig2039:10747..14913+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2039.6731.1 ID=mRNA_Ecto-sp13_S_contig2039.6731.1|Name=mRNA_Ecto-sp13_S_contig2039.6731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4167bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2039:10747..14913+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGTTTTGGACAAGAGCATAGCATTATTTCTCGTACTTCCTTTCTCAAG ATCGATCATGTCGTGCCGACGCTAGACTCCACCCGTTGGCTCCGTTCTGA GGTCCCTATCGAGCGCTCTACACCGGTTTGCCACCGTCTTGATCCGAGAA GGTGCCATAAGGGGGTCTTTCTCCAACTTCACAGTTGACGACGCCGTCCG ATTCACCAACAACACGTCAGTGAACAATGGAGGTACGCATTCTGTCCGAA CGCCCAACCATTTCTGGCTTTGTTTTATGTATGTTTGGATTCCATGATTT GTGTTGAGCAGGGCCGCGGGAGGGTCACGCGCAAACGTAGCAACTGTGGC TGTGCTGATTGACTGTGTGTGCTCCCAACTCTGTGTCCCTTGGGTCGGTA TGCATTGACAACGGGAATCTCTTTGTGTGCAATACCCCGAACAGGCTTGG TCCAGTATTGCGTAGTGTACGCTACACGTTCACCGAGGATTTGTTCTTCA ATTAGGCAGGCCTTTAAATCCTGTCAAGTATGAAATTCTGTGGGTACAGG TCTAGGGTGGCTGGCTCGCTAAGCCTTTCGTGCGGGAAGCACCACTGATC GATCCCGTGTTAACTCAATACAGGCTTCCGCAATGCGATCGGAATCACAA TTTGTAGGTGCCATTAATTCGTGGTTCTCCAAGTTCACCTTCCGCGGCGA CCCGATTTTTGATAACAATGCAGCTGCCGGCGATGGAGGTGCGTGTCACT CTTCCGGTCGTTTAGATTCTTAAGTCCTAGCTGCCTCCGAGAAGTGGGGC ATGAACACTTGATATCACCATGGGACCGACTTGCGACTGATTCTGCATGT GTGGCTTCTCATGAAACATTGGATGTCCTACGCCGTGAATGTTAAGAAGC AGGATGACTACTAGACCACTAGTCAGCGCGGTCTAGTGGTCCATCTAGGT CATCGTGTTGCTTAACCAAGGTCAATGACCATGAACACATCTCCTCAGGG TTACATCCCAGTGATCAGCGCTGTCTTGCCCGATCCATGTTACGGTAAAA GTAAGAGGTTCATCGGCATATTTTGCGAGTCCCTCAGACTTTGTATTCCC TAATATCGGCCGCAAATTGAATCGGATAAAATGGGCCAGGGGAGATTCGG ACTCGGGCACTAGTCTAACTTTTGTTTACAAGCACGATGCCCACTAGGCC ACTTGGTCAGCAGTGGTCATGGTGCTTCTTAACATTGACCTCGCACGTGA AGCTCACCTCGTAACGCCCACACCTTGCCTTGACAAGGACGACATCGCGA GAGTTTCGATGGAAGCACGGCGATGAAAGAGCCCACCACGTTCATGCGAC AAGGAGAGCTACTGACATCATTGCCGTTGGTTCCCCTGCGCGCAGGTGGT ATATCAGCGTACCAGACAAATCTGACAATCTTCGACGGCCTATCTTTCGT CAACAACTCCGCTGGCGGCTATGGAGGTATTTCGTCTTTTGCCGATGTGC ATAGTTTAGTAACCCTGGGAGGAAAAGTGAAGGACAGCAATAGCAACCAT CGCCGTGGAGAAGGGCTGACTGCTCGACTGTGCCTGTCGACGGCTGCCAC CTCTGGACCAAGTCAGGACGTCATGATTGGTTGCGTCTTGAGGGCGGGTG TTTGTGATTTATTGATTGAGAACGGCGCCGCGCAGTTAGCCAAAGCAGAT CATGCTCAACACTCCCCCGACAAGGTGCATGAAAAGAGTTTCCGCCGTTG GTTCCTCCTGATAGTACTGATGTCGATCAGGAATGACATCCTAGTGGTTT GATGGATCCCGTTTCGTCTCTGGCTTGACAACGCAGCCGAACATTCGTGT TCGGTCCCGTGGCGAAGCAGCCGGCGCTGGCATGCATAGGTACTCAGTCA AACAGCTGCAAGCGGTGGGCTCGTCGCGTTTAACAGGCCGTTCGATCTCT GCTTTTGCCAGCACCCCCGCTCAGCCTGATTCAAGAAGCCGCATGAGAAG CCGTTGTGAAGTCTGTACACGCCTCGTGTGATGCTTGCGTCCAGGCGCTT TTGATGCCTCCGTCTGCGTCATCATCATCGACGGCGACGCAACTTTCCAC GGGAACTTGGCCGAGGATGGAGGTAGTCTTTATTTGATTGGTAGACACAC GGTATGGTCCATTGAGATTTTACATCTTGTCCTTATGGCTCCCAACGATG AGCCCGTCGTTGACCCTAGCTGCGTGTGCCTGCAAGGACGTTACGCCTGG TGTCCAAAGCCGATTATCCTTGATCTCTTGCATTGTAGCGCAGAAACGGG CGGCGTCATGGATCGTTCGCGAGGCGTGCTGTGTTGTAGTGAGGAAATGT ATCCTTAAACACGGCATGTCGCCGGTATCCTCAGATGGGGGTTTCCGCGG TACGCTCGAGCCAGAGTTTGTAGAACAACTCTGTGCAAGAGCGGGGCATG ATTCCCCTCGTTGAATTGTGGCATCGGTCAAGTTGTACCACATGTGTTTC ATAACTTCTGTACTCTTGCTCTTCTATCCCACTCGTTTTCAAGGTGCGAT ATTCTTGTACCAAGCCGTGGCACATTTACGAGGAGGGTCATTTTCGGAGA ATTCCGCTGCCCAGAGCGGGGGAGCGATGTCAATTTCACAGCCCACCGAA GTCACCCTGTACGGAGTTCTGTTCGTATCGAATACGGCTGATATCGGCGG CGCCATCGCGCTGACATCCACTGGAGAAGAACCTACGCAGTTTGAGGCGT GCACGTTTGATTATAATAGCGCCGTCGATGGGGGGGCGCTGTATATGTCG ACCAATGAGGGAATGGAAGTCGTCCGGAACTGCACGTTCTATGGCAACCA AGCAGGCAAGTCGATTGAACGCGAAGCATCAAGAAGCGACGATGTTCGGA CGGCGCTTCAAAGAGTAGGTCTGCTACAGGTGCCTAAGTAGCGTCTACCC TGAATGAAATACCCAAACAGGCTTCGTGCTACCTGTACCTCCTAGGTTTG GAGATTCTCCGTGTGCCCGTGGATCTAGAATCAACGCCTCATCCTGGCAT GCATGCACACGATGAAACCATCTGCCGTTGCAAAACACCCACCACCAGGT GTCTGATTCAACACGTAGCGAATGTTTCACGCACAGATTGCATGTACGGC TTTTCTGCTACACCTGGCCCAGACCCGTGTTTGTTTGACAATTCGCCTCG TCGTCCAGAAATATCTGGGGGAACGATCTTTCACACCGGATATCTTGGCA TGATCGAGACGGTGTTTGCGTCCAACAAAGCGGGCCAAGATGGTACGGCT GTGTTCAGCATAGGGGTGGTGCAGGAAGCTCTCAACGTAACCTTTGCGAG TAATACGCTCCACTGCCCACTGGGCGAGTATGCGTACGACAAGGAGGTGA GTTCAATTCATGTCTTTCCTTGAGCTACGGAGACATAAGCACTCAGGGTC AAACTGAGTAATTCTACCTGGTTGTCGCACGGAAGCCGCAAGCACTGGCC AATCCCTAAGATGGGATCGAGTTTACGGTGGTAGGGTGTCCGGCCGCGAT CTCGCCCGCGCCTGTTTGGCAGTCTGTAGTCTTGCGCACGACGCTCGCTG TAGCGATGCTTGAGAATTCAGCATTGGTTCGATGTGTTCTCCAGTACCTG TTACCTAATACATGGCACCCTTGTTTCATCTCTTCAGGCCGAAGACAACT CCTGCCGTTTCGAACTAGCGTGCGCGCGATGCTCGGCGGATTGCGAGGCC ATCCCATCCAGCGTGACCATGGCCGACAGCACCATCCCTGTCTGCGTAGA GTTGATGGAAGGCACGCAAGCATCATCAAGCGGCACCACCGTCGCAACCC TCGACCTGCGGGAGGGATACTACCGCACCTCCGCGGAGAGTCAAGTCGTG GTGGAGTGTTACTTGACAAGTGCCTGCGTGGGTGGCACCGACCCCGAAAA CTATTGTGCGGATGGCTACGAAGGTCCCTGTGAGTGCCGTTTCCGTTCAC GTCTCCCTTGTTCGTGATGTGTGCAAGAGCCAGGAAAAGTCCAAATTGCC GAAGTGGGGAATGTTTGCTGTCCCTCCAACATCCGCGTCAACCTCATGTC GCATCTCCGGCCCACTACGCGTTTCGACTGCGCAGATTGCTCGGTGTGTG CGGACGGCTACGCGCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2039:10747..14913+

>mRNA_Ecto-sp13_S_contig2039.6731.1 ID=mRNA_Ecto-sp13_S_contig2039.6731.1|Name=mRNA_Ecto-sp13_S_contig2039.6731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2039:10747..14913+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCAATTTCACAGCCCACCGAAGTCACCCTGTACGGAGTTCTGTTCGT
ATCGAATACGGCTGATATCGGCGGCGCCATCGCGCTGACATCCACTGGAG
AAGAACCTACGCAGTTTGAGGCGTGCACGTTTGATTATAATAGCGCCGTC
GATGGGGGGGCGCTGTATATGTCGACCAATGAGGGAATGGAAGTCGTCCG
GAACTGCACGTTCTATGGCAACCAAGCAGAAATATCTGGGGGAACGATCT
TTCACACCGGATATCTTGGCATGATCGAGACGGTGTTTGCGTCCAACAAA
GCGGGCCAAGATGGTACGGCTGTGTTCAGCATAGGGGTGGTGCAGGAAGC
TCTCAACGTAACCTTTGCGAGTAATACGCTCCACTGCCCACTGGGCGAGT
ATGCGTACGACAAGGAGGCCGAAGACAACTCCTGCCGTTTCGAACTAGCG
TGCGCGCGATGCTCGGCGGATTGCGAGGCCATCCCATCCAGCGTGACCAT
GGCCGACAGCACCATCCCTGTCTGCGTAGAGTTGATGGAAGGCACGCAAG
CATCATCAAGCGGCACCACCGTCGCAACCCTCGACCTGCGGGAGGGATAC
TACCGCACCTCCGCGGAGAGTCAAGTCGTGGTGGAGTGTTACTTGACAAG
TGCCTGCGTGGGTGGCACCGACCCCGAAAACTATTGTGCGGATGGCTACG
AAGGTCCCTATTGCTCGGTGTGTGCGGACGGCTACGCGCCA
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