mRNA_Ecto-sp13_S_contig2039.6730.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2039.6730.1
Unique NamemRNA_Ecto-sp13_S_contig2039.6730.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig2039.6730.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 3.410e-6
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 DVFVTDCGFQNNSATGYGGAIFAESSEVTIAGNTRF 108
            DVFVTDCGFQNNSATGYGGA++  +S V I+    F
Sbjct:  161 DVFVTDCGFQNNSATGYGGAVYGNNSRVAISDTVAF 196
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2039.6730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSF5_9PHAE3.410e-666.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2039contigEcto-sp13_S_contig2039:8822..10958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size360
Hectar predicted targeting categoryother localisation
Exons5
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463022.8229692-CDS-Ecto-sp13_S_contig2039:8821..88761681463022.8229692-CDS-Ecto-sp13_S_contig2039:8821..8876Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2039 8822..8876 +
1681463022.8336542-CDS-Ecto-sp13_S_contig2039:9363..94441681463022.8336542-CDS-Ecto-sp13_S_contig2039:9363..9444Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2039 9364..9444 +
1681463022.842641-CDS-Ecto-sp13_S_contig2039:9849..99301681463022.842641-CDS-Ecto-sp13_S_contig2039:9849..9930Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2039 9850..9930 +
1681463022.850867-CDS-Ecto-sp13_S_contig2039:10125..102061681463022.850867-CDS-Ecto-sp13_S_contig2039:10125..10206Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2039 10126..10206 +
1681463022.8625412-CDS-Ecto-sp13_S_contig2039:10897..109561681463022.8625412-CDS-Ecto-sp13_S_contig2039:10897..10956Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2039 10898..10956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2039.6730.1prot_Ecto-sp13_S_contig2039.6730.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2039 8822..10956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2039.6730.1

>prot_Ecto-sp13_S_contig2039.6730.1 ID=prot_Ecto-sp13_S_contig2039.6730.1|Name=mRNA_Ecto-sp13_S_contig2039.6730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
DVFVTDCGFQNNSATGYGGAIFAESSEVTIAGNTRFFSNSAGYRGGAVYG
NNSRVAISDTVVFTSNLAIGDGGAMYTDSSSITIQDNVTFDGNAAENRGG
AIRGSFSNFTVDDAVRFTN
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mRNA from alignment at Ecto-sp13_S_contig2039:8822..10958+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2039.6730.1 ID=mRNA_Ecto-sp13_S_contig2039.6730.1|Name=mRNA_Ecto-sp13_S_contig2039.6730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2137bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2039:8822..10958+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGTGTTCGTTACTGATTGCGGCTTTCAGAACAACAGCGCAACAGGGTA
TGGGGGTAAGCATGGGGTACGAGCGTGCCTCCTGCAGACACGTGTTACAG
CGGTGATGCACACGTGAATCTGTGTCTACTTTCCCGGATGATGATGTTCT
CCTTCAAGGCTCGAGAAGCGCTACTTGCGCAAAACAAAAGAAATTCATCA
TGTAAATTTCGTATTTTCAGGGTTATTTGTTCAGCAAACAGACGGTTGTC
TATGATGTCTACAAATACATAACACCCTTTTGTTTTGCGCGAGGCTCGAC
GATTAAACGTTGGCTCAAACTGAGTCCATGTTCTTATTTTCCAAGTTCTT
CTCAAGAGCAGGCATCTGCCTAGGATAATAAGCTGGGTTCTTGTTCATTT
TTGTACGCCGATTGCGCCATGCCGAGGGGTATAACGAGTGTAAGAGTGCA
TGCGCCAAAAAAGTTCGAGAGTAAACCACATGACCACTTCCTGCACCTCT
TCCAGACCACTGAAACTATCTGCTGTTCTTCCTTCGACCCAGGGGCAATT
TTCGCGGAGTCCTCTGAAGTCACCATCGCTGGGAACACACGATTCTTCAG
CAATTCCGCCGGATACAGAGGAGGTGAAGAGAAGACCAATTCCAACCCAT
CCAGGGTGGTCAGAAACTAGTACATGGTCGAGACATGCGAGATACTGGTA
TGGCTTTGTCTCTACAGTTGTGCTCCGCGAAGCCTGGCAAAGAATCCGGA
CTGCAGAGACAGGATGGTGTCGATGCGGTTGCTTGATGCGCACAAGCGCT
ACCTATGTGTCCGTATTGCAGCATTTTGCTCCACGACTACCCGGTACTGT
ATGTCTCGGGAACTTTTAACTTTCCCCCCAGGATTTCGCCGTGCACTTAA
GGTGCGCCTTGGCTTCGAAACCGATCGAAGGGGAAAAAAACGCTACAATA
GCTGCTCGTGAGATGATGCTGGCTAGATACGATGTGGACCCAAAAACTAA
TACGGCTTTTCTGATACCCACGACACAGGTGCCGTTTACGGGAACAACTC
CCGAGTCGCCATCAGTGACACCGTAGTTTTCACGTCCAACTTGGCAATCG
GCGACGGAGGTACGTCTTATTTTGCTGCGGTCCCTGACCCATCTCGGCGT
CGACATTTGGCAGTCTACGCCCTTGGTTTTACAATGCACGCTCTTTGCTA
GGTAGATCATTTGACGGTGCTTCCCACTCCACGATTCCGATGCCGCTTGG
GGGTCGCCAACTCTACCATACTCTTCGCATTCAAATCGCTGTCCCCCCCA
AAAGGGGCCATGTACACCGACAGCTCGAGCATCACCATCCAAGACAACGT
AACCTTCGACGGCAACGCAGCTGAGAACAGAGGAGGTGGGCTGCTATAAG
AGGATCGAAAACGTTGGTAGACAAGCGGTGAGACGGCACGTGAGCCAACG
CAAGCGACGGAAACCGTTGTTCGGGGTGTACGCGGCCCTGCCAGCTTTCG
TGGCGTGCCGCCGTTTCACGGATATCTATCGTATCCGTGAGGTTATTCGT
GCCCGTTCTAATTGCATCATTTTTTTCTCGGACAAAGCTTGTGACAAGGG
AAGGTGGCTCCGTGGTCTGTGAAGAGCAAGAAAACGGATGTACTGCTGAC
TGAAGGCATGTGGTTTCCCAACGCAGGACGAGACTGCCAAGGACATTGGT
CAGGTGTTCAACGAAGTAGACCCTTCGCGTATCATTTGTATGCGGTCGAG
TCCTCCGGGGCAGCAAGTAGCACGCGCCTTTCCGTGTTGGTGGGTTGGCG
CCAAGGTAGTCGCTCGGGCGGCTGTCGAATACGAATGACTTCTTGTGGGC
CGTCTCCGCGATCTTTGGTTCGAAGTCTCACGCTCATGCATGCCACATGA
TGTAGATAAGTCAAACACAACAGAGAGAGTTTTGGACAAGAGCATAGCAT
TATTTCTCGTACTTCCTTTCTCAAGATCGATCATGTCGTGCCGACGCTAG
ACTCCACCCGTTGGCTCCGTTCTGAGGTCCCTATCGAGCGCTCTACACCG
GTTTGCCACCGTCTTGATCCGAGAAGGTGCCATAAGGGGGTCTTTCTCCA
ACTTCACAGTTGACGACGCCGTCCGATTCACCAACAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2039:8822..10958+

>mRNA_Ecto-sp13_S_contig2039.6730.1 ID=mRNA_Ecto-sp13_S_contig2039.6730.1|Name=mRNA_Ecto-sp13_S_contig2039.6730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2039:8822..10958+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGTGTTCGTTACTGATTGCGGCTTTCAGAACAACAGCGCAACAGGGTA
TGGGGGGGCAATTTTCGCGGAGTCCTCTGAAGTCACCATCGCTGGGAACA
CACGATTCTTCAGCAATTCCGCCGGATACAGAGGAGGTGCCGTTTACGGG
AACAACTCCCGAGTCGCCATCAGTGACACCGTAGTTTTCACGTCCAACTT
GGCAATCGGCGACGGAGGGGCCATGTACACCGACAGCTCGAGCATCACCA
TCCAAGACAACGTAACCTTCGACGGCAACGCAGCTGAGAACAGAGGAGGT
GCCATAAGGGGGTCTTTCTCCAACTTCACAGTTGACGACGCCGTCCGATT
CACCAAC
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