mRNA_Ecto-sp13_S_contig20382.6727.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20382.6727.1
Unique NamemRNA_Ecto-sp13_S_contig20382.6727.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20382.6727.1 vs. uniprot
Match: A0A6H5KUR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR8_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 1.980e-62
Identity = 102/117 (87.18%), Postives = 110/117 (94.02%), Query Frame = 1
Query:   19 AVLEASMLNSNCQALYTQNISNGLRDEQLMMLANVLRRGNIWCLNTGENSKIKPSTWCDFVKEIEKTGVTHAYLSEECIPIGLKKVMRTAIRDNKVKHTRHKSASNVKLIRRCTKVW 369
            AVLEA MLN+NCQALY QN+SNGLRDEQLMMLA VLR+GNIWCLN GENSKIKPSTWCDFVKEIEKTGVTHAYLSEECIP+GLKK MRTAIR N+VKHTRHKSASNVK+IR+CT +W
Sbjct:  755 AVLEALMLNNNCQALYIQNVSNGLRDEQLMMLARVLRKGNIWCLNAGENSKIKPSTWCDFVKEIEKTGVTHAYLSEECIPVGLKKAMRTAIRANRVKHTRHKSASNVKVIRQCTNMW 871          
BLAST of mRNA_Ecto-sp13_S_contig20382.6727.1 vs. uniprot
Match: A0A6H5JA48_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA48_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 3.820e-61
Identity = 98/111 (88.29%), Postives = 104/111 (93.69%), Query Frame = 1
Query:   19 AVLEASMLNSNCQALYTQNISNGLRDEQLMMLANVLRRGNIWCLNTGENSKIKPSTWCDFVKEIEKTGVTHAYLSEECIPIGLKKVMRTAIRDNKVKHTRHKSASNVKLIR 351
            AVLEA MLN+NCQALY QN+SNGLRDEQ+MMLA VLRRGNIWCLN GENSKIKPSTW DFVKEI+KTGVTHAYLSEECIPIGLKK MRTAIR N+VKHTRHKSASNVK+IR
Sbjct:  250 AVLEALMLNNNCQALYIQNVSNGLRDEQIMMLAKVLRRGNIWCLNAGENSKIKPSTWRDFVKEIDKTGVTHAYLSEECIPIGLKKAMRTAIRANRVKHTRHKSASNVKVIR 360          
BLAST of mRNA_Ecto-sp13_S_contig20382.6727.1 vs. uniprot
Match: A0A6H5K7R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R7_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 7.520e-61
Identity = 103/117 (88.03%), Postives = 109/117 (93.16%), Query Frame = 1
Query:   19 AVLEASMLNSNCQALYTQNISNGLRDEQLMMLANVLRRGNIWCLNTGENSKIKPSTWCDFVKEIEKTGVTHAYLSEECIPIGLKKVMRTAIRDNKVKHTRHKSASNVKLIRRCTKVW 369
            AVLEA MLN NCQALY QN+SNGLRDEQLMMLA VLR+GNIWCLN GENSKIKPSTWCDFVKEI+KTGVTHAYLSEECIPIGLKK MRTAIR N+VKHTRHKSASNVK+IRRCT +W
Sbjct:  816 AVLEALMLN-NCQALYIQNVSNGLRDEQLMMLAKVLRKGNIWCLNAGENSKIKPSTWCDFVKEIDKTGVTHAYLSEECIPIGLKKAMRTAIRANRVKHTRHKSASNVKVIRRCTNMW 931          
BLAST of mRNA_Ecto-sp13_S_contig20382.6727.1 vs. uniprot
Match: D8LFH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH6_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 9.600e-51
Identity = 85/118 (72.03%), Postives = 96/118 (81.36%), Query Frame = 1
Query:   16 HAVLEASMLNSNCQALYTQNISNGLRDEQLMMLANVLRRGNIWCLNTGENSKIKPSTWCDFVKEIEKTGVTHAYLSEECIPIGLKKVMRTAIRDNKVKHTRHKSASNVKLIRRCTKVW 369
            +AVL+A M NSNCQALY QN+S G RDEQL MLA VLRRGNIWCLN GENS I PS W  FV+EI+ T VTHAYLSEECIP GL + M+ AIR N+ KHTRHKSASNV++IRRCT +W
Sbjct:  249 NAVLKALMCNSNCQALYIQNVSIGFRDEQLRMLAKVLRRGNIWCLNAGENSGITPSAWWWFVEEIKTTSVTHAYLSEECIPCGLTETMQKAIRANRAKHTRHKSASNVEVIRRCTNMW 366          
BLAST of mRNA_Ecto-sp13_S_contig20382.6727.1 vs. uniprot
Match: A0A6H5JNB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB8_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 6.910e-46
Identity = 82/117 (70.09%), Postives = 95/117 (81.20%), Query Frame = 1
Query:   19 AVLEASMLNSNCQALYTQNISNGLRDEQLMMLANVLRRGNIWCLNTGENSKIKPSTWCDFVKEIEKTGVTHAYLSEECIPIGLKKVMRTAIRDNKVKHTRHKSASNVKLIRRCTKVW 369
            AVLEA M+NSNCQALY QN+SNG RDEQLM LA VLRRG IWCLN GENS+IK STW +FV+EI+ T VTHAYLSE  +P GLK  M+ AIR N++KH RH SASNV +I+RCT +W
Sbjct:  620 AVLEALMINSNCQALYIQNVSNGFRDEQLMRLAEVLRRGLIWCLNAGENSEIKASTWWNFVEEIQNTNVTHAYLSEGSVPSGLKNAMQKAIRRNRLKHDRHLSASNVDVIQRCTHMW 736          
BLAST of mRNA_Ecto-sp13_S_contig20382.6727.1 vs. uniprot
Match: D7FZY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY3_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 2.400e-45
Identity = 79/117 (67.52%), Postives = 91/117 (77.78%), Query Frame = 1
Query:   19 AVLEASMLNSNCQALYTQNISNGLRDEQLMMLANVLRRGNIWCLNTGENSKIKPSTWCDFVKEIEKTGVTHAYLSEECIPIGLKKVMRTAIRDNKVKHTRHKSASNVKLIRRCTKVW 369
            AVLEA M+N NCQALY QN + G RDEQ+  LA VL RGNIWCLN GEN K+K +TW  FV+ I+ T VTHAYLSE  I   LKK MR AIRDN+VKHTRHKSASN+++IRRCT +W
Sbjct:  336 AVLEALMVNDNCQALYIQNFNEGFRDEQVEALAKVLGRGNIWCLNAGENYKVKLATWWQFVEAIKNTNVTHAYLSEHVITAELKKAMRKAIRDNRVKHTRHKSASNLEVIRRCTNMW 452          
BLAST of mRNA_Ecto-sp13_S_contig20382.6727.1 vs. uniprot
Match: A0A6H5KIP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP7_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 3.570e-44
Identity = 79/117 (67.52%), Postives = 92/117 (78.63%), Query Frame = 1
Query:   19 AVLEASMLNSNCQALYTQNISNGLRDEQLMMLANVLRRGNIWCLNTGENSKIKPSTWCDFVKEIEKTGVTHAYLSEECIPIGLKKVMRTAIRDNKVKHTRHKSASNVKLIRRCTKVW 369
            AVLEA M+N NCQALY QN + G RDEQ+  LA VLRRGNIWCLN GEN K+K +TW  FV+ I+ T VTHAYLSE  I   LKK MR AIRDN+VKHTRHKSA+N+++IRRCT +W
Sbjct:  708 AVLEALMVNDNCQALYIQNFNEGFRDEQVGALAKVLRRGNIWCLNAGENYKVKLATWWQFVEAIKNTNVTHAYLSEHVITAELKKAMRKAIRDNRVKHTRHKSAANLEVIRRCTNMW 824          
BLAST of mRNA_Ecto-sp13_S_contig20382.6727.1 vs. uniprot
Match: A0A7S2G2D6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2D6_9STRA)

HSP 1 Score: 123 bits (308), Expect = 8.670e-31
Identity = 58/117 (49.57%), Postives = 75/117 (64.10%), Query Frame = 1
Query:   19 AVLEASMLNSNCQALYTQNISNGLRDEQLMMLANVLRRGNIWCLNTGENSKIKPSTWCDFVKEIEKTGVTHAYLSEECIPIGLKKVMRTAIRDNKVKHTRHKSASNVKLIRRCTKVW 369
            ++L+A M+NSNCQALY QN ++G+ D QL  L+ VL+ G IWCLN GEN +I P  W  F   +  T VTH Y SE  I +  K  MR  IR N+ KH+RH S  N+ +I+RCT  W
Sbjct:   97 SILDALMVNSNCQALYIQNFNDGMLDVQLQKLSKVLQLGRIWCLNIGENYRITPGAWNQFADSLLATNVTHMYASEHVISVEQKTRMRDIIRANRAKHSRHNSIDNIAVIKRCTNCW 213          
BLAST of mRNA_Ecto-sp13_S_contig20382.6727.1 vs. uniprot
Match: A0A1Z5JIQ5_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIQ5_FISSO)

HSP 1 Score: 115 bits (287), Expect = 2.720e-27
Identity = 60/125 (48.00%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    1 PYTVKHAVLEASMLNSNCQALYTQNISNGLRDEQLMMLANVLRRG--NIWCLNTGENSKIKPSTWCDFVKEIEKTGVTHAYLSEECIPIGLKKVMRTAIRDNKVKHTRHKSASNVKLIRRCTKVW 369
            P  V  AVL A   N+NC+ALY QN + G+RDEQ+M L  VL+R   NIWCLN GE  K+K  TW  F   ++KT +TH Y SE  I   LK  +R+ IRDN+ KH+ H   +N+  I +CT  W
Sbjct:  715 PCLVIDAVLAALEENTNCEALYIQNFNEGMRDEQMMSLLQVLQRSSCNIWCLNIGETYKVKQKTWKRFAIGLKKTKITHMYASEHVISTELKDQIRSTIRDNRSKHSMHCDPNNLDTIVKCTHCW 839          
BLAST of mRNA_Ecto-sp13_S_contig20382.6727.1 vs. uniprot
Match: A0A1Z5JS48_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JS48_FISSO)

HSP 1 Score: 114 bits (286), Expect = 3.480e-27
Identity = 60/125 (48.00%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    1 PYTVKHAVLEASMLNSNCQALYTQNISNGLRDEQLMMLANVLRRGN--IWCLNTGENSKIKPSTWCDFVKEIEKTGVTHAYLSEECIPIGLKKVMRTAIRDNKVKHTRHKSASNVKLIRRCTKVW 369
            P  V  AVL A   N+NC+ALY QN + G+RDEQ+M L  VL+R +  IWCLN GE  K+K  TW  F   ++KT +TH Y SE  I   LK  +R+ IRDN+ KH+ H   SN+  I +CT  W
Sbjct:  518 PCLVIDAVLAALEENTNCEALYIQNFNEGMRDEQMMSLLQVLQRSSCKIWCLNIGETYKVKQKTWKKFAIGLKKTKITHMYASEHVISTELKDQIRSTIRDNRSKHSMHCDPSNLDTIIKCTHCW 642          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20382.6727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KUR8_9PHAE1.980e-6287.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA48_9PHAE3.820e-6188.29Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7R7_9PHAE7.520e-6188.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFH6_ECTSI9.600e-5172.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNB8_9PHAE6.910e-4670.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZY3_ECTSI2.400e-4567.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIP7_9PHAE3.570e-4467.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2G2D6_9STRA8.670e-3149.57Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A1Z5JIQ5_FISSO2.720e-2748.00Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5JS48_FISSO3.480e-2748.00Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20382contigEcto-sp13_S_contig20382:343..846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score174.9
Seed ortholog evalue2.4e-41
Seed eggNOG ortholog2880.D8LFH6
Model size372
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2BXB7@1,2S2EZ@2759
Cds size372
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463022.7180426-CDS-Ecto-sp13_S_contig20382:342..5701681463022.7180426-CDS-Ecto-sp13_S_contig20382:342..570Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20382 343..570 +
1681463022.7271633-CDS-Ecto-sp13_S_contig20382:702..8461681463022.7271633-CDS-Ecto-sp13_S_contig20382:702..846Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20382 703..846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20382.6727.1prot_Ecto-sp13_S_contig20382.6727.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20382 343..846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20382.6727.1

>prot_Ecto-sp13_S_contig20382.6727.1 ID=prot_Ecto-sp13_S_contig20382.6727.1|Name=mRNA_Ecto-sp13_S_contig20382.6727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
PYTVKHAVLEASMLNSNCQALYTQNISNGLRDEQLMMLANVLRRGNIWCL
NTGENSKIKPSTWCDFVKEIEKTGVTHAYLSEECIPIGLKKVMRTAIRDN
KVKHTRHKSASNVKLIRRCTKVW*
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mRNA from alignment at Ecto-sp13_S_contig20382:343..846+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20382.6727.1 ID=mRNA_Ecto-sp13_S_contig20382.6727.1|Name=mRNA_Ecto-sp13_S_contig20382.6727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20382:343..846+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCATACACCGTCAAACATGCTGTGCTGGAAGCGTCGATGCTCAACAGCAA CTGTCAGGCGCTGTACACTCAGAACATAAGCAATGGTCTGCGAGACGAAC AGCTTATGATGCTGGCCAATGTGCTCCGCAGGGGCAACATCTGGTGTCTG AATACGGGGGAGAACTCCAAGATCAAGCCTTCCACTTGGTGCGACTTCGT CAAGGAGATAGAGAAAACAGGCGTCACGGTAAGCGCGAGAAGAAGTTTGT ACGATGCCGTCCATGTTGCTGTCGGTGGATGCTTTTATTACTGCTGAAGT GAATTAATTGATCACTCTGTCTTTTTTACTTTGCCCTCCCTCATCGTTCG TGCCGTACAGCACGCTTATCTCAGCGAGGAATGCATCCCTATCGGCCTCA AGAAGGTCATGCGGACCGCCATCCGTGACAACAAAGTCAAGCACACCCGC CACAAGTCGGCTTCAAATGTCAAATTAATACGGCGATGTACCAAGGTGTG GTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20382:343..846+

>mRNA_Ecto-sp13_S_contig20382.6727.1 ID=mRNA_Ecto-sp13_S_contig20382.6727.1|Name=mRNA_Ecto-sp13_S_contig20382.6727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20382:343..846+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCATACACCGTCAAACATGCTGTGCTGGAAGCGTCGATGCTCAACAGCAA
CTGTCAGGCGCTGTACACTCAGAACATAAGCAATGGTCTGCGAGACGAAC
AGCTTATGATGCTGGCCAATGTGCTCCGCAGGGGCAACATCTGGTGTCTG
AATACGGGGGAGAACTCCAAGATCAAGCCTTCCACTTGGTGCGACTTCGT
CAAGGAGATAGAGAAAACAGGCGTCACGCACGCTTATCTCAGCGAGGAAT
GCATCCCTATCGGCCTCAAGAAGGTCATGCGGACCGCCATCCGTGACAAC
AAAGTCAAGCACACCCGCCACAAGTCGGCTTCAAATGTCAAATTAATACG
GCGATGTACCAAGGTGTGGTGA
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