mRNA_Ecto-sp13_S_contig20381.6726.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20381.6726.1
Unique NamemRNA_Ecto-sp13_S_contig20381.6726.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Match: D8LRX5_ECTSI (LigB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRX5_ECTSI)

HSP 1 Score: 565 bits (1457), Expect = 6.380e-204
Identity = 264/272 (97.06%), Postives = 268/272 (98.53%), Query Frame = 2
Query:   17 MKQIDATSAAAQWYHTFTKKWTKPSAIVVVSAHWEGRGAIKVTTGEKHPLLFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVGSGQATHGRGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGFWPGGGEGEAKGGDDEGVCS 832
            MKQIDATSAAAQWY TFTKKW KPSAIVVVSAHWEGRGA+KVTTGEKHPL FDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNA+GDDSRGYDHGTFIPLKLMYPDAD+PVVQVSLLGGLDPEKHL MGKTLKKLVDERDVL+VGSGQATHGRGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGFWPGGGEGEAKGGDDEGVCS
Sbjct:    1 MKQIDATSAAAQWYRTFTKKWAKPSAIVVVSAHWEGRGAVKVTTGEKHPLFFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNARGDDSRGYDHGTFIPLKLMYPDADVPVVQVSLLGGLDPEKHLKMGKTLKKLVDERDVLIVGSGQATHGRGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGFWPGGGEGEAKGGDDEGVCS 272          
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Match: A0A836CEX8_9STRA (Catalytic LigB subunit of aromatic ring-opening dioxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEX8_9STRA)

HSP 1 Score: 230 bits (586), Expect = 2.960e-71
Identity = 122/259 (47.10%), Postives = 154/259 (59.46%), Query Frame = 2
Query:   11 GGMKQIDATSAAAQWYHTFTKKWTKPSAIVVVSAHWEGRGAIKVTTGEKHP-LLFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVGSGQATHGRGSDHRPYPPGKGAPKEE---AFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGF 775
            G    ID  S  A  +   +    KP  IV+ +AHWE  G     TG+  P L++DYYGFP   Y L Y  PG P+LA  I+ LL+  G +A+ +  RG+DHG FIPLK++YPDAD+PVV +SL   LDP  H+++GK L  L   R VLV GSG ATH  G        G+G P E    AF+DWLK T     V+ +ER+RRL  W  +APH R++HPREEHLLPLHVAAG  GF  G ++ D    G MS+A   F
Sbjct:   31 GPFSAIDKNSRVAADFRKLSTVLPKPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGLAG-RGVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGD-GVSAQERERRLLRWTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLDATVFGGMSMASFAF 287          
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Match: A0A354Z8M8_9SPIO (Dioxygenase n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A354Z8M8_9SPIO)

HSP 1 Score: 218 bits (556), Expect = 6.250e-67
Identity = 120/245 (48.98%), Postives = 157/245 (64.08%), Query Frame = 2
Query:   41 AAAQWYHTFTKKWTKPSAIVVVSAHWEGRGAIKVTTGEKHPLLFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVGSGQATHGRG--SDHRPYPPGKGAP--KEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLA 763
            A  Q+      K  KP AI+V+SAHWE   A  +T GE   LL+DYYGFP+  Y++ Y  PG+P +   +  LL   G +++ D +RG+DHG FIPLKLMYPDADIP VQ+SLL  LDP  HLN+GK L+ L+ E+++LV+GSG + H  G  S H     GK AP  + EAF +WL +     A++  ER+RRL  WE +APH R  HPREEHLLPLHV AG    +P  +IFDD  +G  ++A
Sbjct:   38 AMVQFMEALPAKLRKPEAILVISAHWEAPEAT-LTGGETPSLLYDYYGFPEKAYEITYPAPGNPRMVELVAGLLRKSGISSRIDTNRGFDHGMFIPLKLMYPDADIPTVQMSLLRNLDPVSHLNLGKALRPLM-EQNILVIGSGFSFHNIGAFSWH-----GKAAPDPRNEAFQNWLIDCCTG-ALSESERERRLSAWE-EAPHARYCHPREEHLLPLHVCAGMAN-KPARVIFDDDILGKRAVA 272          
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Match: A0A3M1ERB5_9CHLR (Dioxygenase n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1ERB5_9CHLR)

HSP 1 Score: 216 bits (551), Expect = 2.300e-66
Identity = 116/233 (49.79%), Postives = 153/233 (65.67%), Query Frame = 2
Query:   80 TKPSAIVVVSAHWEGRGAIKVTTGEKHPLLFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVGSGQATHGRGSDHRPYPPGKGA---PKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACV 769
            TKP AI+VVSAHWE R A  V   +  P+L+DYYGFP   Y++ Y  PGHP LA+R+  LL  +   A+ D  RG+DHGT+IPLKLMYPDA+IP +QVSL+ GL+PE HL MGKTL+ L DE ++L++GSG + H    + R +  GKG    P+ +AF DWL ET    +++  ER++RL  WE+ AP  R  HPREEHLLPLHV  G     P  ++FDD  +G   +  +
Sbjct:   36 TKPEAIIVVSAHWEERSAT-VLGADHPPMLYDYYGFPPEAYEITYPAPGHPALAKRLAGLLAENDIPARVDAERGFDHGTYIPLKLMYPDAEIPTIQVSLVAGLNPEIHLAMGKTLRALRDE-NILLLGSGFSFH----NQRAFFGGKGDGSDPQNDAFQDWLIETCTG-SLSQREREKRLAAWEQ-APGARYCHPREEHLLPLHVCFGAA-HGPAEVVFDDKIVGKRGIGLL 259          
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Match: A0A1H3CEX5_9GAMM (Aromatic ring-opening dioxygenase, catalytic subunit, LigB family n=1 Tax=Marinobacter mobilis TaxID=488533 RepID=A0A1H3CEX5_9GAMM)

HSP 1 Score: 213 bits (542), Expect = 6.110e-65
Identity = 115/247 (46.56%), Postives = 152/247 (61.54%), Query Frame = 2
Query:   41 AAAQWYHTFTKKWTKPSAIVVVSAHWEGRGAIKVTTGEKHPLLFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVGSGQATHG----RGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACV 769
            A   +  T  ++   P AIVV+SAHWE    + VT+G +  L++DYYGFP   Y +EY  PG P LA  I++ L A G +AQGD  RG+DHG FIPLKLMYPDA IP +Q++L   +DP +HL +G+ L  L  ER++LVVGSG + H     R  D R Y         +AF  WL +T   P +T + R +RLR+W + AP  R  HPREEHLLPLH+ AG  G QP  ++FD   MGH ++A +
Sbjct:   28 AMTDFLQTIPQRLGTPEAIVVISAHWEAP-VVTVTSGAQPALIYDYYGFPPESYSIEYPAPGAPALAETILKHLAAAGIDAQGDRDRGFDHGLFIPLKLMYPDASIPCLQIALQQEMDPGQHLAIGQALAAL-RERNILVVGSGLSFHNMQLLRSGDDR-Y-----RDDVDAFHHWLIDTCCHPELTADTRNQRLRDWAQ-APGARLCHPREEHLLPLHLCAGMAGNQPAEVVFDAPVMGHRAIALL 265          
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Match: A0A250INI5_9DELT (Dioxygenase n=1 Tax=Melittangium boletus DSM 14713 TaxID=1294270 RepID=A0A250INI5_9DELT)

HSP 1 Score: 213 bits (541), Expect = 2.890e-64
Identity = 122/252 (48.41%), Postives = 152/252 (60.32%), Query Frame = 2
Query:   20 KQIDATSAAAQWYHTFTKKWTKPSAIVVVSAHWEGRGAIKVTTGEKHPLLFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVGSGQATHGRGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGF 775
            K+  A S   Q   T  K  T P A++V+SAHWE      V T E+ P+L+DYYGFP   Y + +  PGHP+LA R+ ELL A GF    D  RGYDHGTFIPLKL YPDAD+P VQ+SL  GLDPE+HL MG+ L  L DE  V ++GSG + H   +   P    +     EAF  WL+ETA   A   +ER  RL +W++ AP GR +HPREEHLLPL V AG  G   GSI ++   +G   L+ V F
Sbjct:   67 KEFSALSGYLQSVRTLPK--TAPKALLVISAHWE-EAVPTVMTSERPPILYDYYGFPPASYQITWPAPGHPQLAARVRELLGAAGFETASDSRRGYDHGTFIPLKLTYPDADVPTVQLSLKQGLDPEEHLAMGRALAPLRDE-GVFIIGSGMSYHNLRAGFGP----RTHRAAEAFDVWLRETAVLEA---KERDARLVQWDK-APAGRQSHPREEHLLPLMVIAGAAGADRGSIAYNGTFLG-TPLSAVHF 305          
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Match: UPI000375BE82 (dioxygenase n=1 Tax=Desulfobacter curvatus TaxID=2290 RepID=UPI000375BE82)

HSP 1 Score: 211 bits (538), Expect = 3.430e-64
Identity = 109/237 (45.99%), Postives = 153/237 (64.56%), Query Frame = 2
Query:   83 KPSAIVVVSAHWEGRGAIKVTTGEKHPLLFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVGSGQATH---GRGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGFWPG 784
            KP  +VV+SAHWE    + ++  E   L++DYYGFP   Y++EY   GHPELAR+ ++LLE  G  A  +D RG+DHG +IPL LM P+AD+P +Q+SL  GLD +KHL MG+ L+ L+ E ++ ++GSG + H   G   D  P  P    P+  +F DWLK+T A+  ++ E++++ L  WE+ AP  R+ HPREEHLLPL V AG  G++P   +FD   MG  S+ C  FWPG
Sbjct:   44 KPEVVVVISAHWESDPPMVISHPEPG-LVYDYYGFPRQAYEIEYPAAGHPELARKAVDLLEEAGIKAMEEDKRGFDHGVYIPLTLMLPNADVPCIQISLSKGLDADKHLLMGQALRPLLKE-NIWLLGSGFSFHNMRGFDMDAGPGSPSVPDPQNRSFQDWLKKTCANEKISLEQQKQNLLNWEQ-APAARHCHPREEHLLPLMVCAGAAGYRPAHKVFDVKIMGRSSV-CF-FWPG 275          
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Match: A0A496XGL0_9GAMM (Dioxygenase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A496XGL0_9GAMM)

HSP 1 Score: 210 bits (534), Expect = 8.690e-64
Identity = 113/229 (49.34%), Postives = 144/229 (62.88%), Query Frame = 2
Query:   83 KPSAIVVVSAHWEGRGAIKVTTGEKHPLLFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVGSGQATHGRGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACV 769
            +PSAI+V+SAHWE  G   +T+G+   L++DYYGFPD  YD+EY   G P LA RI  LLE  G  A+ DD RG+DHG F+PLKLMYP A IP VQ+SL+  LDP+ H+N+GK L  L  E +VL+VGSG + H   +       G    K  AF DWL  T  +  + P ER+RRL EW  DAP  R  HPREEHLLPLHV  G +     + +FDD  +G ++ A +
Sbjct:   38 QPSAILVISAHWE-EGVATITSGKSPSLIYDYYGFPDEAYDVEYPAAGDPILAERIFGLLEKAGIEARMDDHRGFDHGLFVPLKLMYPAASIPCVQLSLINNLDPQTHINIGKALSDLRKE-NVLIVGSGLSFHNMDA-FLSKSDGVMDAKNRAFEDWLAHTCTNNNIPPPERERRLIEWA-DAPAARYCHPREEHLLPLHVCYGLSN-SVAARVFDDKVLGMLASAYL 261          
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Match: A0A1V5KWT7_9BACT (LigB family dioxygenase n=1 Tax=bacterium ADurb.Bin478 TaxID=1866932 RepID=A0A1V5KWT7_9BACT)

HSP 1 Score: 210 bits (534), Expect = 9.820e-64
Identity = 119/249 (47.79%), Postives = 153/249 (61.45%), Query Frame = 2
Query:   29 DATSAAAQWYHTFTKKWTKPSAIVVVSAHWEGRGAIKVTTGEKHPLLFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVGSGQATHGRGSD--HRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACV 769
            D+  A   + H  + +  KP AI+V+SAHWE + A  V    K PLL+DYYGFPD  Y + Y  PG PELA+ II LL      A  D  RG DHG F+PLKL+YP ADIP +QVSLL GL+P  H+ +GK L+ L+ E ++LVVGSG + H  G+    R  PP       + F +WL E   S  + P ER+RRL  WE+ AP  R  HPREEHLLPLHV AG T  QP +++FDD  +G  ++A +
Sbjct:   25 DSHQAMVDFMHRLSGRLKKPDAILVISAHWEEKVAT-VLGAAKPPLLYDYYGFPDEAYAITYPTPGSPELAQHIIALLNRRQIPASIDVQRGLDHGVFVPLKLIYPQADIPALQVSLLRGLNPAAHMALGKALRPLMAE-NILVVGSGFSFHNMGAFTWQRNSPPDSA---NDDFQNWLIEVCTS-RILPGERERRLVAWEQ-APAARYCHPREEHLLPLHVCAGMTD-QPATVVFDDSILGKRAVAFL 265          
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Match: A0A353H2W1_9CHLR (Dioxygenase n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A353H2W1_9CHLR)

HSP 1 Score: 209 bits (531), Expect = 3.050e-63
Identity = 120/236 (50.85%), Postives = 149/236 (63.14%), Query Frame = 2
Query:   83 KPSAIVVVSAHWEGRGAIKVTTGEKHPLLFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVGSGQATHG-----RGSDHRPYPPGKGAPKEEAFVDWLKETA--ASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACV 769
            KP AIVVVSAHWE   A  +   +  P+ +DYYGFP   Y + YA PG PELA+RI  LLE +G  AQ D  RG+DHG FIPLK+MYP ADIP  Q+SLL GL+P  H+ +GK L++L+ + +VLV+GSG + H      R   H+P          +AF DWL +TA  A P  T   R++RL EWE+ AP  R  HPREEHLLPLHV  G  G +PG +IFDD   G  SLA +
Sbjct:   46 KPDAIVVVSAHWEEPKAT-LLGAQFPPMFYDYYGFPAEAYSITYAGPGSPELAKRIAALLEKNGVPAQIDPMRGFDHGHFIPLKMMYPAADIPSTQLSLLRGLNPAAHIQLGKALRELLSD-NVLVIGSGFSFHNMQAFFRQQIHQPDS------ANDAFQDWLTQTATGAMPETT---REQRLIEWEK-APSARYCHPREEHLLPLHVCQGMAG-KPGEVIFDDLIFGVRSLAFL 268          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRX5_ECTSI6.380e-20497.06LigB domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CEX8_9STRA2.960e-7147.10Catalytic LigB subunit of aromatic ring-opening di... [more]
A0A354Z8M8_9SPIO6.250e-6748.98Dioxygenase n=1 Tax=Spirochaetaceae bacterium TaxI... [more]
A0A3M1ERB5_9CHLR2.300e-6649.79Dioxygenase n=1 Tax=Caldilineae bacterium TaxID=24... [more]
A0A1H3CEX5_9GAMM6.110e-6546.56Aromatic ring-opening dioxygenase, catalytic subun... [more]
A0A250INI5_9DELT2.890e-6448.41Dioxygenase n=1 Tax=Melittangium boletus DSM 14713... [more]
UPI000375BE823.430e-6445.99dioxygenase n=1 Tax=Desulfobacter curvatus TaxID=2... [more]
A0A496XGL0_9GAMM8.690e-6449.34Dioxygenase n=1 Tax=Gammaproteobacteria bacterium ... [more]
A0A1V5KWT7_9BACT9.820e-6447.79LigB family dioxygenase n=1 Tax=bacterium ADurb.Bi... [more]
A0A353H2W1_9CHLR3.050e-6350.85Dioxygenase n=1 Tax=Anaerolineaceae bacterium TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20381contigEcto-sp13_S_contig20381:115..2057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score570.1
Seed ortholog evalue5.6e-160
Seed eggNOG ortholog2880.D8LRX5
Model size846
KEGG rclassRC00387
KEGG koko:K15777
KEGG ReactionR08836
KEGG Pathwayko00965,map00965
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.ferrous iron binding
EggNOG OGs2QS66@2759,COG3384@1
Ec32 ortholog descriptionExtradiol ring-cleavage dioxygenase, class III enzyme, subunit B
Ec32 orthologEc-08_002800.1
Cds size822
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20381.6726.1prot_Ecto-sp13_S_contig20381.6726.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20381 131..2049 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463022.6313672-UTR-Ecto-sp13_S_contig20381:114..1301681463022.6313672-UTR-Ecto-sp13_S_contig20381:114..130Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20381 115..130 +
1681463022.6883252-UTR-Ecto-sp13_S_contig20381:2049..20571681463022.6883252-UTR-Ecto-sp13_S_contig20381:2049..2057Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20381 2050..2057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463022.6421769-CDS-Ecto-sp13_S_contig20381:130..3241681463022.6421769-CDS-Ecto-sp13_S_contig20381:130..324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20381 131..324 +
1681463022.650455-CDS-Ecto-sp13_S_contig20381:690..8501681463022.650455-CDS-Ecto-sp13_S_contig20381:690..850Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20381 691..850 +
1681463022.6610532-CDS-Ecto-sp13_S_contig20381:1187..12921681463022.6610532-CDS-Ecto-sp13_S_contig20381:1187..1292Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20381 1188..1292 +
1681463022.6751378-CDS-Ecto-sp13_S_contig20381:1686..20491681463022.6751378-CDS-Ecto-sp13_S_contig20381:1686..2049Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20381 1687..2049 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20381.6726.1

>prot_Ecto-sp13_S_contig20381.6726.1 ID=prot_Ecto-sp13_S_contig20381.6726.1|Name=mRNA_Ecto-sp13_S_contig20381.6726.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=274bp
MKQIDATSAAAQWYHTFTKKWTKPSAIVVVSAHWEGRGAIKVTTGEKHPL
LFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHG
TFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVG
SGQATHGRGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLR
EWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLAC
VGFWPGGGEGEAKGGDDEGVCSA*
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mRNA from alignment at Ecto-sp13_S_contig20381:115..2057+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20381.6726.1 ID=mRNA_Ecto-sp13_S_contig20381.6726.1|Name=mRNA_Ecto-sp13_S_contig20381.6726.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1943bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20381:115..2057+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTCGCACGGGAGGGATGAAACAGATCGACGCCACGAGCGCCGCGGCGC AGTGGTACCACACTTTCACCAAGAAGTGGACCAAGCCTTCGGCCATCGTC GTCGTGTCGGCGCATTGGGAAGGAAGGGGCGCCATCAAGGTCACCACCGG CGAGAAACATCCCTTGTTGTTCGATTACTACGGGTTCCCGGACTACTGCT ACGACCTTGAGTAAGCTTTCTTTTTTTTGTGCGTGTGTGTGTGCTACTTG TTCGTACTCGTGGGTGAGTTGTTGTGGTTGTATTTTTCAGTTGTTTTGTG GCCCATTTGCCTGTTTGTTGGGGTGCGTGATGCCGCTGCTGCTGCTGCCG TTGTCGTAAGTGCTGTTGTGAATAATACTGCTTTCGGTGTCGTAGATGTC ACATCAGAGCTAGTGAGCCAGCTCCTCGTTCTCGGTGCATCCCTCATCCA GCGCAGCCCTTCCCGGTGTTGAACTGTCGGTGCGTTCGATTGTCCAAGTT ACCCGCTCGGCTTTATGTATCCTCAATATCACCCCATATATATGTAACGA TAATATTTTCTCCTGAATGTTTTCAGATACGCCCCCCCCGGCCACCCGGA GTTGGCAAGGCGCATAATCGAGCTGCTAGAGGCGGACGGCTTCAACGCCC AGGGGGACGACTCGCGCGGCTACGACCACGGGACTTTCATCCCTCTCAAG CTCATGTATCCCGACGCCGACATTCCCGTCGTGCAGGTGGGCAGGGTTAT TTTTCGTGTTATCGAGCGAGCGCTAGCGTCGGCGTGGGGTGATCTTCCTG AAAGAGGGGAGGGAGGAGGAGAGGGTAATGGTTGACAATCGGCTATTCGC CCGCGCTGTGCCACAAGAAACAAGGTAGATCGGATAGTGACCCATCTTCG CGTCGACACGATATGAATGTTGTGCTTGAGTAGCGTTCGGCGTCTCCTTT TAGTGCAGAGCTCTTGGTACAACTCCGCATGACAAGTGTATCCCTGTCGA GTTGGGGCTTCACGGCATGTTTTCTCCTCTCTCGCCGGGAATAATAAAAC GACGAACGAACGTTAACATCCAGGTGTCCCTCTTGGGAGGCCTTGATCCG GAAAAGCACCTCAACATGGGGAAGACCCTCAAGAAGCTTGTCGACGAACG GGATGTTTTAGTCGTCGGCAGCGGCCAGGTGCGTGGTAACGTGGAGGGAT TAATCAATCAGACAACGTTGGGGTGGTCACGACCAGATAGTCTGAAAAAA CGGGCGGAGCTGTTCGCTTGCCGGTGGTGTTCACCCACGCAGAGCCAGTG CGTGGTGCGAATCGCTCGGCCGAAGGCCGTAAAAAAATAGCGGAGTGCGC TTGACTTCTAGTGCGAACACTGGATGTGGAGGGAACGTAGAAGGTTCCCA CGCTCTTCCTGTGTGACGACAGACGCTGAGCATCGAGCGCCCGAATCTTG TCTACTCCAGGAGTCGGGATCGTATGTCCAATGTGTTGCCTTGAATTTTT TACCCGCCCCGGCCCACTCCCTGCCTCGGTCGTTTTCCCTTTCTCGTCGA CTGGAATGATCCGCCGTGTCAGGCGACCCATGGCCGAGGCAGCGATCACC GCCCGTACCCGCCGGGCAAGGGAGCGCCGAAGGAAGAGGCCTTCGTCGAC TGGCTCAAGGAGACCGCCGCCTCCCCGGCCGTCACCCCGGAGGAGCGCCA GCGGCGGCTGCGGGAGTGGGAGAGGGACGCGCCGCACGGCCGCAACGCCC ACCCTCGCGAGGAGCACCTCCTGCCGCTGCATGTCGCGGCCGGGTGCACC GGCTTCCAGCCGGGATCCATCATCTTCGACGACTTCGCCATGGGCCACAT GTCGCTGGCGTGCGTGGGGTTCTGGCCCGGTGGCGGAGAGGGCGAGGCGA AAGGCGGGGATGATGAGGGTGTCTGCTCTGCCTGACCACGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20381:115..2057+

>mRNA_Ecto-sp13_S_contig20381.6726.1 ID=mRNA_Ecto-sp13_S_contig20381.6726.1|Name=mRNA_Ecto-sp13_S_contig20381.6726.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=822bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20381:115..2057+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAACAGATCGACGCCACGAGCGCCGCGGCGCAGTGGTACCACACTTT
CACCAAGAAGTGGACCAAGCCTTCGGCCATCGTCGTCGTGTCGGCGCATT
GGGAAGGAAGGGGCGCCATCAAGGTCACCACCGGCGAGAAACATCCCTTG
TTGTTCGATTACTACGGGTTCCCGGACTACTGCTACGACCTTGAATACGC
CCCCCCCGGCCACCCGGAGTTGGCAAGGCGCATAATCGAGCTGCTAGAGG
CGGACGGCTTCAACGCCCAGGGGGACGACTCGCGCGGCTACGACCACGGG
ACTTTCATCCCTCTCAAGCTCATGTATCCCGACGCCGACATTCCCGTCGT
GCAGGTGTCCCTCTTGGGAGGCCTTGATCCGGAAAAGCACCTCAACATGG
GGAAGACCCTCAAGAAGCTTGTCGACGAACGGGATGTTTTAGTCGTCGGC
AGCGGCCAGGCGACCCATGGCCGAGGCAGCGATCACCGCCCGTACCCGCC
GGGCAAGGGAGCGCCGAAGGAAGAGGCCTTCGTCGACTGGCTCAAGGAGA
CCGCCGCCTCCCCGGCCGTCACCCCGGAGGAGCGCCAGCGGCGGCTGCGG
GAGTGGGAGAGGGACGCGCCGCACGGCCGCAACGCCCACCCTCGCGAGGA
GCACCTCCTGCCGCTGCATGTCGCGGCCGGGTGCACCGGCTTCCAGCCGG
GATCCATCATCTTCGACGACTTCGCCATGGGCCACATGTCGCTGGCGTGC
GTGGGGTTCTGGCCCGGTGGCGGAGAGGGCGAGGCGAAAGGCGGGGATGA
TGAGGGTGTCTGCTCTGCCTGA
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