mRNA_Ecto-sp13_S_contig20381.6726.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Match: D8LRX5_ECTSI (LigB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRX5_ECTSI) HSP 1 Score: 565 bits (1457), Expect = 6.380e-204 Identity = 264/272 (97.06%), Postives = 268/272 (98.53%), Query Frame = 2
Query: 17 MKQIDATSAAAQWYHTFTKKWTKPSAIVVVSAHWEGRGAIKVTTGEKHPLLFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVGSGQATHGRGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGFWPGGGEGEAKGGDDEGVCS 832
MKQIDATSAAAQWY TFTKKW KPSAIVVVSAHWEGRGA+KVTTGEKHPL FDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNA+GDDSRGYDHGTFIPLKLMYPDAD+PVVQVSLLGGLDPEKHL MGKTLKKLVDERDVL+VGSGQATHGRGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGFWPGGGEGEAKGGDDEGVCS
Sbjct: 1 MKQIDATSAAAQWYRTFTKKWAKPSAIVVVSAHWEGRGAVKVTTGEKHPLFFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNARGDDSRGYDHGTFIPLKLMYPDADVPVVQVSLLGGLDPEKHLKMGKTLKKLVDERDVLIVGSGQATHGRGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGFWPGGGEGEAKGGDDEGVCS 272
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Match: A0A836CEX8_9STRA (Catalytic LigB subunit of aromatic ring-opening dioxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEX8_9STRA) HSP 1 Score: 230 bits (586), Expect = 2.960e-71 Identity = 122/259 (47.10%), Postives = 154/259 (59.46%), Query Frame = 2
Query: 11 GGMKQIDATSAAAQWYHTFTKKWTKPSAIVVVSAHWEGRGAIKVTTGEKHP-LLFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVGSGQATHGRGSDHRPYPPGKGAPKEE---AFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGF 775
G ID S A + + KP IV+ +AHWE G TG+ P L++DYYGFP Y L Y PG P+LA I+ LL+ G +A+ + RG+DHG FIPLK++YPDAD+PVV +SL LDP H+++GK L L R VLV GSG ATH G G+G P E AF+DWLK T V+ +ER+RRL W +APH R++HPREEHLLPLHVAAG GF G ++ D G MS+A F
Sbjct: 31 GPFSAIDKNSRVAADFRKLSTVLPKPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGLAG-RGVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGD-GVSAQERERRLLRWTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLDATVFGGMSMASFAF 287
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Match: A0A354Z8M8_9SPIO (Dioxygenase n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A354Z8M8_9SPIO) HSP 1 Score: 218 bits (556), Expect = 6.250e-67 Identity = 120/245 (48.98%), Postives = 157/245 (64.08%), Query Frame = 2
Query: 41 AAAQWYHTFTKKWTKPSAIVVVSAHWEGRGAIKVTTGEKHPLLFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVGSGQATHGRG--SDHRPYPPGKGAP--KEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLA 763
A Q+ K KP AI+V+SAHWE A +T GE LL+DYYGFP+ Y++ Y PG+P + + LL G +++ D +RG+DHG FIPLKLMYPDADIP VQ+SLL LDP HLN+GK L+ L+ E+++LV+GSG + H G S H GK AP + EAF +WL + A++ ER+RRL WE +APH R HPREEHLLPLHV AG +P +IFDD +G ++A
Sbjct: 38 AMVQFMEALPAKLRKPEAILVISAHWEAPEAT-LTGGETPSLLYDYYGFPEKAYEITYPAPGNPRMVELVAGLLRKSGISSRIDTNRGFDHGMFIPLKLMYPDADIPTVQMSLLRNLDPVSHLNLGKALRPLM-EQNILVIGSGFSFHNIGAFSWH-----GKAAPDPRNEAFQNWLIDCCTG-ALSESERERRLSAWE-EAPHARYCHPREEHLLPLHVCAGMAN-KPARVIFDDDILGKRAVA 272
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Match: A0A3M1ERB5_9CHLR (Dioxygenase n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1ERB5_9CHLR) HSP 1 Score: 216 bits (551), Expect = 2.300e-66 Identity = 116/233 (49.79%), Postives = 153/233 (65.67%), Query Frame = 2
Query: 80 TKPSAIVVVSAHWEGRGAIKVTTGEKHPLLFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVGSGQATHGRGSDHRPYPPGKGA---PKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACV 769
TKP AI+VVSAHWE R A V + P+L+DYYGFP Y++ Y PGHP LA+R+ LL + A+ D RG+DHGT+IPLKLMYPDA+IP +QVSL+ GL+PE HL MGKTL+ L DE ++L++GSG + H + R + GKG P+ +AF DWL ET +++ ER++RL WE+ AP R HPREEHLLPLHV G P ++FDD +G + +
Sbjct: 36 TKPEAIIVVSAHWEERSAT-VLGADHPPMLYDYYGFPPEAYEITYPAPGHPALAKRLAGLLAENDIPARVDAERGFDHGTYIPLKLMYPDAEIPTIQVSLVAGLNPEIHLAMGKTLRALRDE-NILLLGSGFSFH----NQRAFFGGKGDGSDPQNDAFQDWLIETCTG-SLSQREREKRLAAWEQ-APGARYCHPREEHLLPLHVCFGAA-HGPAEVVFDDKIVGKRGIGLL 259
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Match: A0A1H3CEX5_9GAMM (Aromatic ring-opening dioxygenase, catalytic subunit, LigB family n=1 Tax=Marinobacter mobilis TaxID=488533 RepID=A0A1H3CEX5_9GAMM) HSP 1 Score: 213 bits (542), Expect = 6.110e-65 Identity = 115/247 (46.56%), Postives = 152/247 (61.54%), Query Frame = 2
Query: 41 AAAQWYHTFTKKWTKPSAIVVVSAHWEGRGAIKVTTGEKHPLLFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVGSGQATHG----RGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACV 769
A + T ++ P AIVV+SAHWE + VT+G + L++DYYGFP Y +EY PG P LA I++ L A G +AQGD RG+DHG FIPLKLMYPDA IP +Q++L +DP +HL +G+ L L ER++LVVGSG + H R D R Y +AF WL +T P +T + R +RLR+W + AP R HPREEHLLPLH+ AG G QP ++FD MGH ++A +
Sbjct: 28 AMTDFLQTIPQRLGTPEAIVVISAHWEAP-VVTVTSGAQPALIYDYYGFPPESYSIEYPAPGAPALAETILKHLAAAGIDAQGDRDRGFDHGLFIPLKLMYPDASIPCLQIALQQEMDPGQHLAIGQALAAL-RERNILVVGSGLSFHNMQLLRSGDDR-Y-----RDDVDAFHHWLIDTCCHPELTADTRNQRLRDWAQ-APGARLCHPREEHLLPLHLCAGMAGNQPAEVVFDAPVMGHRAIALL 265
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Match: A0A250INI5_9DELT (Dioxygenase n=1 Tax=Melittangium boletus DSM 14713 TaxID=1294270 RepID=A0A250INI5_9DELT) HSP 1 Score: 213 bits (541), Expect = 2.890e-64 Identity = 122/252 (48.41%), Postives = 152/252 (60.32%), Query Frame = 2
Query: 20 KQIDATSAAAQWYHTFTKKWTKPSAIVVVSAHWEGRGAIKVTTGEKHPLLFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVGSGQATHGRGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGF 775
K+ A S Q T K T P A++V+SAHWE V T E+ P+L+DYYGFP Y + + PGHP+LA R+ ELL A GF D RGYDHGTFIPLKL YPDAD+P VQ+SL GLDPE+HL MG+ L L DE V ++GSG + H + P + EAF WL+ETA A +ER RL +W++ AP GR +HPREEHLLPL V AG G GSI ++ +G L+ V F
Sbjct: 67 KEFSALSGYLQSVRTLPK--TAPKALLVISAHWE-EAVPTVMTSERPPILYDYYGFPPASYQITWPAPGHPQLAARVRELLGAAGFETASDSRRGYDHGTFIPLKLTYPDADVPTVQLSLKQGLDPEEHLAMGRALAPLRDE-GVFIIGSGMSYHNLRAGFGP----RTHRAAEAFDVWLRETAVLEA---KERDARLVQWDK-APAGRQSHPREEHLLPLMVIAGAAGADRGSIAYNGTFLG-TPLSAVHF 305
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Match: UPI000375BE82 (dioxygenase n=1 Tax=Desulfobacter curvatus TaxID=2290 RepID=UPI000375BE82) HSP 1 Score: 211 bits (538), Expect = 3.430e-64 Identity = 109/237 (45.99%), Postives = 153/237 (64.56%), Query Frame = 2
Query: 83 KPSAIVVVSAHWEGRGAIKVTTGEKHPLLFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVGSGQATH---GRGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGFWPG 784
KP +VV+SAHWE + ++ E L++DYYGFP Y++EY GHPELAR+ ++LLE G A +D RG+DHG +IPL LM P+AD+P +Q+SL GLD +KHL MG+ L+ L+ E ++ ++GSG + H G D P P P+ +F DWLK+T A+ ++ E++++ L WE+ AP R+ HPREEHLLPL V AG G++P +FD MG S+ C FWPG
Sbjct: 44 KPEVVVVISAHWESDPPMVISHPEPG-LVYDYYGFPRQAYEIEYPAAGHPELARKAVDLLEEAGIKAMEEDKRGFDHGVYIPLTLMLPNADVPCIQISLSKGLDADKHLLMGQALRPLLKE-NIWLLGSGFSFHNMRGFDMDAGPGSPSVPDPQNRSFQDWLKKTCANEKISLEQQKQNLLNWEQ-APAARHCHPREEHLLPLMVCAGAAGYRPAHKVFDVKIMGRSSV-CF-FWPG 275
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Match: A0A496XGL0_9GAMM (Dioxygenase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A496XGL0_9GAMM) HSP 1 Score: 210 bits (534), Expect = 8.690e-64 Identity = 113/229 (49.34%), Postives = 144/229 (62.88%), Query Frame = 2
Query: 83 KPSAIVVVSAHWEGRGAIKVTTGEKHPLLFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVGSGQATHGRGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACV 769
+PSAI+V+SAHWE G +T+G+ L++DYYGFPD YD+EY G P LA RI LLE G A+ DD RG+DHG F+PLKLMYP A IP VQ+SL+ LDP+ H+N+GK L L E +VL+VGSG + H + G K AF DWL T + + P ER+RRL EW DAP R HPREEHLLPLHV G + + +FDD +G ++ A +
Sbjct: 38 QPSAILVISAHWE-EGVATITSGKSPSLIYDYYGFPDEAYDVEYPAAGDPILAERIFGLLEKAGIEARMDDHRGFDHGLFVPLKLMYPAASIPCVQLSLINNLDPQTHINIGKALSDLRKE-NVLIVGSGLSFHNMDA-FLSKSDGVMDAKNRAFEDWLAHTCTNNNIPPPERERRLIEWA-DAPAARYCHPREEHLLPLHVCYGLSN-SVAARVFDDKVLGMLASAYL 261
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Match: A0A1V5KWT7_9BACT (LigB family dioxygenase n=1 Tax=bacterium ADurb.Bin478 TaxID=1866932 RepID=A0A1V5KWT7_9BACT) HSP 1 Score: 210 bits (534), Expect = 9.820e-64 Identity = 119/249 (47.79%), Postives = 153/249 (61.45%), Query Frame = 2
Query: 29 DATSAAAQWYHTFTKKWTKPSAIVVVSAHWEGRGAIKVTTGEKHPLLFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVGSGQATHGRGSD--HRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACV 769
D+ A + H + + KP AI+V+SAHWE + A V K PLL+DYYGFPD Y + Y PG PELA+ II LL A D RG DHG F+PLKL+YP ADIP +QVSLL GL+P H+ +GK L+ L+ E ++LVVGSG + H G+ R PP + F +WL E S + P ER+RRL WE+ AP R HPREEHLLPLHV AG T QP +++FDD +G ++A +
Sbjct: 25 DSHQAMVDFMHRLSGRLKKPDAILVISAHWEEKVAT-VLGAAKPPLLYDYYGFPDEAYAITYPTPGSPELAQHIIALLNRRQIPASIDVQRGLDHGVFVPLKLIYPQADIPALQVSLLRGLNPAAHMALGKALRPLMAE-NILVVGSGFSFHNMGAFTWQRNSPPDSA---NDDFQNWLIEVCTS-RILPGERERRLVAWEQ-APAARYCHPREEHLLPLHVCAGMTD-QPATVVFDDSILGKRAVAFL 265
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Match: A0A353H2W1_9CHLR (Dioxygenase n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A353H2W1_9CHLR) HSP 1 Score: 209 bits (531), Expect = 3.050e-63 Identity = 120/236 (50.85%), Postives = 149/236 (63.14%), Query Frame = 2
Query: 83 KPSAIVVVSAHWEGRGAIKVTTGEKHPLLFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNAQGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLNMGKTLKKLVDERDVLVVGSGQATHG-----RGSDHRPYPPGKGAPKEEAFVDWLKETA--ASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACV 769
KP AIVVVSAHWE A + + P+ +DYYGFP Y + YA PG PELA+RI LLE +G AQ D RG+DHG FIPLK+MYP ADIP Q+SLL GL+P H+ +GK L++L+ + +VLV+GSG + H R H+P +AF DWL +TA A P T R++RL EWE+ AP R HPREEHLLPLHV G G +PG +IFDD G SLA +
Sbjct: 46 KPDAIVVVSAHWEEPKAT-LLGAQFPPMFYDYYGFPAEAYSITYAGPGSPELAKRIAALLEKNGVPAQIDPMRGFDHGHFIPLKMMYPAADIPSTQLSLLRGLNPAAHIQLGKALRELLSD-NVLVIGSGFSFHNMQAFFRQQIHQPDS------ANDAFQDWLTQTATGAMPETT---REQRLIEWEK-APSARYCHPREEHLLPLHVCQGMAG-KPGEVIFDDLIFGVRSLAFL 268 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20381.6726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig20381.6726.1 >prot_Ecto-sp13_S_contig20381.6726.1 ID=prot_Ecto-sp13_S_contig20381.6726.1|Name=mRNA_Ecto-sp13_S_contig20381.6726.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=274bp MKQIDATSAAAQWYHTFTKKWTKPSAIVVVSAHWEGRGAIKVTTGEKHPLback to top mRNA from alignment at Ecto-sp13_S_contig20381:115..2057+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig20381.6726.1 ID=mRNA_Ecto-sp13_S_contig20381.6726.1|Name=mRNA_Ecto-sp13_S_contig20381.6726.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1943bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20381:115..2057+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20381:115..2057+ >mRNA_Ecto-sp13_S_contig20381.6726.1 ID=mRNA_Ecto-sp13_S_contig20381.6726.1|Name=mRNA_Ecto-sp13_S_contig20381.6726.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=822bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20381:115..2057+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |