mRNA_Ecto-sp13_S_contig2038.6725.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2038.6725.1
Unique NamemRNA_Ecto-sp13_S_contig2038.6725.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig2038.6725.1 vs. uniprot
Match: D7G4C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4C5_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.490e-20
Identity = 45/61 (73.77%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 DEGRSQGAARDVLLRVVPRLSPAERLRTSIVEQPRGSPRSHRGEEPAREGLQPDVSVVFSP 183
            D+GR+QGA RDVL    PRLSPA RLR SIV+QPRGSPRSHRGEEPA EGLQPD +  F P
Sbjct:    3 DKGRAQGAVRDVL----PRLSPAGRLRASIVQQPRGSPRSHRGEEPAGEGLQPDGATPFGP 59
[Close]
BLAST of mRNA_Ecto-sp13_S_contig2038.6725.1 vs. uniprot
Match: A0A6H5J804_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J804_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 6.850e-7
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 2 
Query:   68 QRGYGLPLLNSLGEALDLIAEKNLHEKAFNQT 163
            ++GY LPL NSLGE LDLIAE+NL EKAFNQT
Sbjct:  468 EQGYVLPLFNSLGETLDLIAEQNLQEKAFNQT 499
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2038.6725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4C5_ECTSI1.490e-2073.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J804_9PHAE6.850e-778.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2038contigEcto-sp13_S_contig2038:1030..1900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size183
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_007280.1
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463022.5909154-CDS-Ecto-sp13_S_contig2038:1029..11031681463022.5909154-CDS-Ecto-sp13_S_contig2038:1029..1103Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2038 1030..1103 +
1681463022.5999138-CDS-Ecto-sp13_S_contig2038:1791..19001681463022.5999138-CDS-Ecto-sp13_S_contig2038:1791..1900Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2038 1792..1900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2038.6725.1prot_Ecto-sp13_S_contig2038.6725.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2038 1030..1900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2038.6725.1

>prot_Ecto-sp13_S_contig2038.6725.1 ID=prot_Ecto-sp13_S_contig2038.6725.1|Name=mRNA_Ecto-sp13_S_contig2038.6725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
DEGRSQGAARDVLLRVVPRLSPAERLRTSIVEQPRGSPRSHRGEEPAREG
LQPDVSVVFSP
back to top

mRNA from alignment at Ecto-sp13_S_contig2038:1030..1900+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2038.6725.1 ID=mRNA_Ecto-sp13_S_contig2038.6725.1|Name=mRNA_Ecto-sp13_S_contig2038.6725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=871bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2038:1030..1900+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGAAGGACGCTCTCAAGGCGCTGCCCGGGACGTTCTCCTCAGGGTCGT
CCCCAGGCTCAGCCCCGCAGAGAGGTAGGGGCCCGACCTCCAATGCCACC
GCAGCCCTCGCAACGGTGTGCTTTCCCGCTATAGTCATATTCAGTGTTTA
TCGCGTCAGTCAGAGAGCGCACGCGCTGGCGTGTATTGAACCAATATCCA
AATGGGTCCGAAGGTCTATTGCTGAGTGGCCTGGTGAATTCGCGCAGCGT
CTTACAAACGTGTCGAACAGGAAATTTTTTGGTTGCCACGGTCGTTCTCA
ACGTTCATAGCCCCTCCACCTCGCAAAGGATTTTTAGTGACACCTGGGAG
AATAACGCAGGTACGCATGTACGTGCACCTCCACGGCGAAGTACTGTATT
CACTTACCCTCCGTCAAGTGGCTTGAGAACTCGCACGAATTTCAAGACAA
AACGACAAGACTAGCGGCGGGTAGCTGTGCGCCGATCTAAAACCTTACGA
AGATCTTCTGGTCGCTAAAATGATAGTGCATGAAGCCCCTTTCTGTTGGC
CAAAAGGTTTGTTTCAGCATTTTTCCCATTCGTCTCGGTTCCGCCGAAAA
CAATTGTCGGTTTGGCTGGCCCCCAAGCTTCCCCGAAGGTGTTCATATTC
CCCACCTCTCCGCGTCCTATCGCACACATTTGCCGCCGTAACGTCCGCTG
CCTCGCCCTGTTCAGTGAAGTTCACGGTGTCGTTGACGACAAAGGTCAGT
GAGACGAACAAGGCTACGGACTTCCATTGTTGAACAGCCTCGGGGAAGCC
CTCGATCTCATCGCGGAGAAGAACCTGCACGAGAAGGCCTTCAACCAGAC
GTGAGTGTAGTGTTCTCTCCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2038:1030..1900+

>mRNA_Ecto-sp13_S_contig2038.6725.1 ID=mRNA_Ecto-sp13_S_contig2038.6725.1|Name=mRNA_Ecto-sp13_S_contig2038.6725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2038:1030..1900+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGAAGGACGCTCTCAAGGCGCTGCCCGGGACGTTCTCCTCAGGGTCGT
CCCCAGGCTCAGCCCCGCAGAGAGGCTACGGACTTCCATTGTTGAACAGC
CTCGGGGAAGCCCTCGATCTCATCGCGGAGAAGAACCTGCACGAGAAGGC
CTTCAACCAGACGTGAGTGTAGTGTTCTCTCCT
back to top