mRNA_Ecto-sp13_S_contig20378.6724.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20378.6724.1
Unique NamemRNA_Ecto-sp13_S_contig20378.6724.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20378.6724.1 vs. uniprot
Match: D7FXB0_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXB0_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.070e-20
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    4 KDHGVDNESLWVVIISPSPPSPEVLSVIRSPLFMSRVIYFRGSVM 138
            +DHGVDNESLWVVI+SPSPPSPEVLSVIRSPLFMSRVIYFRGSVM
Sbjct:  275 EDHGVDNESLWVVIMSPSPPSPEVLSVIRSPLFMSRVIYFRGSVM 319
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20378.6724.1 vs. uniprot
Match: A0A6H5K4I5_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I5_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.810e-18
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    4 KDHGVDNESLWVVIISPSPPSPEVLSVIRSPLFMSRVIYFRGSVM 138
            +DHG+DNESLWVVI+SPS PSPEVLSVIRSPLFMSRVIYFRGSVM
Sbjct:  316 EDHGMDNESLWVVIMSPSSPSPEVLSVIRSPLFMSRVIYFRGSVM 360
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20378.6724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXB0_ECTSI3.070e-2095.56Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K4I5_9PHAE2.810e-1891.11Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20378contigEcto-sp13_S_contig20378:631..768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score91.3
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog2880.D7FXB0
Model size138
KEGG koko:K04936
KEGG TC1.A.1.3.1,1.A.1.3.2,1.A.1.3.3
KEGG Pathwayko04022,ko04270,ko04911,ko04924,ko04970,ko04972,map04022,map04270,map04911,map04924,map04970,map04972
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.large conductance calcium-activated potassium channel activity
EggNOG OGsKOG1420@1,KOG1420@2759
Cds size138
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463022.5651093-CDS-Ecto-sp13_S_contig20378:630..7681681463022.5651093-CDS-Ecto-sp13_S_contig20378:630..768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20378 631..768 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20378.6724.1prot_Ecto-sp13_S_contig20378.6724.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20378 631..768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20378.6724.1

>prot_Ecto-sp13_S_contig20378.6724.1 ID=prot_Ecto-sp13_S_contig20378.6724.1|Name=mRNA_Ecto-sp13_S_contig20378.6724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
CKDHGVDNESLWVVIISPSPPSPEVLSVIRSPLFMSRVIYFRGSVM
back to top

mRNA from alignment at Ecto-sp13_S_contig20378:631..768-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20378.6724.1 ID=mRNA_Ecto-sp13_S_contig20378.6724.1|Name=mRNA_Ecto-sp13_S_contig20378.6724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20378:631..768- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCAAGGATCATGGCGTGGACAATGAGTCTCTCTGGGTCGTGATCATAAG
CCCCTCCCCGCCCTCCCCCGAGGTCCTGAGCGTCATACGGAGCCCCCTGT
TCATGTCGAGGGTCATATACTTCCGGGGGAGCGTCATG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20378:631..768-

>mRNA_Ecto-sp13_S_contig20378.6724.1 ID=mRNA_Ecto-sp13_S_contig20378.6724.1|Name=mRNA_Ecto-sp13_S_contig20378.6724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20378:631..768- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCAAGGATCATGGCGTGGACAATGAGTCTCTCTGGGTCGTGATCATAAG
CCCCTCCCCGCCCTCCCCCGAGGTCCTGAGCGTCATACGGAGCCCCCTGT
TCATGTCGAGGGTCATATACTTCCGGGGGAGCGTCATG
back to top