mRNA_Ecto-sp13_S_contig20374.6722.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20374.6722.1
Unique NamemRNA_Ecto-sp13_S_contig20374.6722.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20374.6722.1 vs. uniprot
Match: A0A6H5K786_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K786_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 4.830e-21
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 LPRVCNQVSRQPFLKGDGFDIYIDRACGMPYSCTISKVVVRVI 129
            LPRVCNQVSRQPFLKGDGFDIYIDRACGMPYSCTISKVVVRVI
Sbjct:  937 LPRVCNQVSRQPFLKGDGFDIYIDRACGMPYSCTISKVVVRVI 979
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BLAST of mRNA_Ecto-sp13_S_contig20374.6722.1 vs. uniprot
Match: D7FTC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC7_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 5.960e-15
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:   22 VSRQPFLKGDGFDIYIDRACGMPYSCTISKVVVRVI 129
            VSRQPFLKGDGFDIYIDRACGMPYSCTI+KVVVRVI
Sbjct: 1245 VSRQPFLKGDGFDIYIDRACGMPYSCTITKVVVRVI 1280
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BLAST of mRNA_Ecto-sp13_S_contig20374.6722.1 vs. uniprot
Match: A0A835Z439_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z439_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 1.910e-5
Identity = 18/34 (52.94%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:   22 VSRQPFLKGDGFDIYIDRACGMPYSCTISKVVVR 123
            +SR+PF  GDGFD+YID+A G+P +CT++K  ++
Sbjct: 1429 ISRRPFEVGDGFDVYIDQAVGLPETCTVTKATLK 1462
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20374.6722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K786_9PHAE4.830e-21100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTC7_ECTSI5.960e-1597.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z439_9STRA1.910e-552.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20374contigEcto-sp13_S_contig20374:2634..2762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score77.0
Seed ortholog evalue2.4e-12
Seed eggNOG ortholog2880.D7FTC7
Model size129
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs2CP3B@1,2QZQR@2759
Cds size129
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463022.4772503-CDS-Ecto-sp13_S_contig20374:2633..27621681463022.4772503-CDS-Ecto-sp13_S_contig20374:2633..2762Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20374 2634..2762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20374.6722.1prot_Ecto-sp13_S_contig20374.6722.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20374 2634..2762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20374.6722.1

>prot_Ecto-sp13_S_contig20374.6722.1 ID=prot_Ecto-sp13_S_contig20374.6722.1|Name=mRNA_Ecto-sp13_S_contig20374.6722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
LPRVCNQVSRQPFLKGDGFDIYIDRACGMPYSCTISKVVVRVI
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mRNA from alignment at Ecto-sp13_S_contig20374:2634..2762+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20374.6722.1 ID=mRNA_Ecto-sp13_S_contig20374.6722.1|Name=mRNA_Ecto-sp13_S_contig20374.6722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20374:2634..2762+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCCCCGCGTGTGTAACCAGGTAAGCAGACAGCCGTTCCTAAAGGGAGA
CGGCTTCGACATATATATTGACCGGGCCTGCGGCATGCCGTACTCTTGCA
CCATCTCGAAAGTCGTGGTCAGGGTCATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20374:2634..2762+

>mRNA_Ecto-sp13_S_contig20374.6722.1 ID=mRNA_Ecto-sp13_S_contig20374.6722.1|Name=mRNA_Ecto-sp13_S_contig20374.6722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20374:2634..2762+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCCCCGCGTGTGTAACCAGGTAAGCAGACAGCCGTTCCTAAAGGGAGA
CGGCTTCGACATATATATTGACCGGGCCTGCGGCATGCCGTACTCTTGCA
CCATCTCGAAAGTCGTGGTCAGGGTCATC
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