mRNA_Ecto-sp13_S_contig20372.6721.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20372.6721.1
Unique NamemRNA_Ecto-sp13_S_contig20372.6721.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20372.6721.1 vs. uniprot
Match: D8LJ52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ52_ECTSI)

HSP 1 Score: 412 bits (1060), Expect = 4.160e-133
Identity = 207/214 (96.73%), Postives = 210/214 (98.13%), Query Frame = 1 
Query:  202 DKVYRNTYVCNLCLLTLAVSFMADLYPGAPSHNVPISTALLWACSNVDGVRALRRRSFAYALSTAVLVSLLMDVDFLASDVKAYALGQLEEEDDDLQRVIVERNMHTFGRIVVGIAAGLKALSWQGLLATFPQGVHALNLLWRRFKLFLPVWGSPRKLTKEVYNRVVALAWLHLLAATALAVMAGVAGMGFEWAPQFASSQGAGIPLAAICFLK 843
            DKVYRNTYVCNLCLLTLAVSFMADLYPGAPSHNVPISTALLWACSNVDGVRALRRRSFAYALSTAVLVSL MDVDFLASD+KAYAL QLE+EDDDLQRVIVERNMH FGRIVVGIAAGLKALSWQGLLATFPQGVHALNLLWRRFKLFLPVWGSPRKLTKEVYNRVVALAWLHLLAA ALAVMAGVAG+GFEWAPQFASSQGAGIPLAAICFLK
Sbjct:  500 DKVYRNTYVCNLCLLTLAVSFMADLYPGAPSHNVPISTALLWACSNVDGVRALRRRSFAYALSTAVLVSLFMDVDFLASDLKAYALSQLEDEDDDLQRVIVERNMHAFGRIVVGIAAGLKALSWQGLLATFPQGVHALNLLWRRFKLFLPVWGSPRKLTKEVYNRVVALAWLHLLAAMALAVMAGVAGIGFEWAPQFASSQGAGIPLAAICFLK 713
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20372.6721.1 vs. uniprot
Match: A0A6H5L4Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Z2_9PHAE)

HSP 1 Score: 344 bits (883), Expect = 9.530e-110
Identity = 184/213 (86.38%), Postives = 188/213 (88.26%), Query Frame = 1 
Query:    1 IGQDAGAAGQQLGGGVKNDDDRGVAMGAGTEGQPAAAVXXXXXXXGRTVPVPVKRRMSVQVAAAVIVDKVYRNTYVCNLCLLTLAVSFMADLYPGAPSHNVPISTALLWACSNVDGVRALRRRSFAYALSTAVLVSLLMDVDFLASDVK-------------AYALGQLEEEDDDLQRVIVERNMHTFGRIVVGIAAGLKALSWQGLLATFPQ 600
            IGQDAGAAGQQLG GVKNDDDRGV +GAGTEGQPAAAV       GRTVP+PVKRRMSVQVAAAVIVDKVYRNTYVCNLCLLTLAVSFMADLYPGAPSHNVPISTALLWACSNVDGVRALRRRSFAYALSTAVLVSL MDVDFLASD+K             AYAL +LEEEDDDLQRVIVERNMHTFGRIVVGI AGLKALSWQGLLATFPQ
Sbjct:  584 IGQDAGAAGQQLGSGVKNDDDRGVVVGAGTEGQPAAAVAAATAATGRTVPIPVKRRMSVQVAAAVIVDKVYRNTYVCNLCLLTLAVSFMADLYPGAPSHNVPISTALLWACSNVDGVRALRRRSFAYALSTAVLVSLFMDVDFLASDLKVPATHSWTYYTCVAYALSRLEEEDDDLQRVIVERNMHTFGRIVVGIVAGLKALSWQGLLATFPQ 796
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20372.6721.1 vs. uniprot
Match: A0A835YPD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPD1_9STRA)

HSP 1 Score: 155 bits (392), Expect = 5.070e-39
Identity = 99/237 (41.77%), Postives = 128/237 (54.01%), Query Frame = 1 
Query:  148 PVPVKRRMSVQVAAAVIVDKVYRNTYVCNLCLLTLAVSFMADLYPGAPSHNVPISTALLWACSNVDGVRALRRRSFAYALSTAVLVSLLMDVDFLASDVKAYALGQLEEEDDDLQRVIVERNMHTFGRIVVGIAAGLKALSWQ----GLLATFPQGVHALNLLWRRFKLFLPVWGSPRKLTKEVYNRVVALAWLHLLAATALAVMAGVAGMGFEWAPQFASSQGAGIPLAAICFLKA 846
            PV VKRR +V   AA +VD V  N YV NL    LA+SF+ DLYP  P+ +   ST L         VR  R  S A  L    + +         +D      G  E        +++     T+ ++ VG A             GLLAT P+G  AL+L WRRFKLFLP+WG PR LT+EVYNR++AL W+HL AA  L V+A  +G G EWAPQF+S +G G+PL+ + FLKA
Sbjct:  346 PVAVKRRRTVVEVAADVVDGVAANPYVINLSTALLALSFLLDLYPSIPNVSTQPSTTLR--------VREARVSSAAVELEDPTVYN---------TDAARKVAGDTETVVTVAMSLLIILKFFTW-QLSVGTAXXXXXXXXXXXXXGLLATSPEGRVALSLFWRRFKLFLPIWGEPRNLTQEVYNRLIALTWIHLTAAVVLVVLAAASGFGLEWAPQFSSMEGVGVPLSVLIFLKA 564
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20372.6721.1 vs. uniprot
Match: A0A7S1Z2M7_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2M7_TRICV)

HSP 1 Score: 63.5 bits (153), Expect = 1.050e-7
Identity = 47/189 (24.87%), Postives = 90/189 (47.62%), Query Frame = 1 
Query:  241 LLTLAVSFMADLYPGAPSHNVPISTALLWACSNVDGVRALRRRSFAYALSTAVLVSLLMDVDFLASDVKAYAL-GQLEEEDDDLQRV--IVERNMHTFGRIVVGIAAGLKALSWQGLLATFPQGVHALNLLWRRFKLFLP--VWGSPRKLTKEVYNRVVALAWLHLLAATALAVMAGVAGMGFEWAPQF 792
            L  LA      LYP AP  N  ++      C  +   +    ++F   LS  +++S+ +D+D++ASD    +L G L+E D  +++   ++ R +    R ++ +   LK L+   L     +G     +LW    +F P      P+ L+  + +RV+A++W+ +L + +   +A +A     W+P F
Sbjct:   98 LSVLASMAAGSLYPTAPRCNASLAAL----CFALHASKQDHTKAFCILLSLVMILSIGVDIDWIASDYFLASLDGPLDEFDYKIKQASSVIRRVV----RYIILVNIFLKLLATHSLTRQTERGKKLQTMLWYNLHVFCPPTTLRPPKDLSSAIQSRVLAISWIQILCSISQLAIALIANTKLSWSPHF 278
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20372.6721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJ52_ECTSI4.160e-13396.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4Z2_9PHAE9.530e-11086.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YPD1_9STRA5.070e-3941.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1Z2M7_TRICV1.050e-724.87Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20372contigEcto-sp13_S_contig20372:2..2864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size846
Hectar predicted targeting categoryother localisation
Exons5
Cds size846
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463022.4024656-CDS-Ecto-sp13_S_contig20372:1..2081681463022.4024656-CDS-Ecto-sp13_S_contig20372:1..208Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20372 2..208 +
1681463022.4156306-CDS-Ecto-sp13_S_contig20372:805..10451681463022.4156306-CDS-Ecto-sp13_S_contig20372:805..1045Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20372 806..1045 +
1681463022.4272652-CDS-Ecto-sp13_S_contig20372:1389..15421681463022.4272652-CDS-Ecto-sp13_S_contig20372:1389..1542Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20372 1390..1542 +
1681463022.4382212-CDS-Ecto-sp13_S_contig20372:2092..21761681463022.4382212-CDS-Ecto-sp13_S_contig20372:2092..2176Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20372 2093..2176 +
1681463022.452067-CDS-Ecto-sp13_S_contig20372:2702..28641681463022.452067-CDS-Ecto-sp13_S_contig20372:2702..2864Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20372 2703..2864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20372.6721.1prot_Ecto-sp13_S_contig20372.6721.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20372 2..2864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20372.6721.1

>prot_Ecto-sp13_S_contig20372.6721.1 ID=prot_Ecto-sp13_S_contig20372.6721.1|Name=mRNA_Ecto-sp13_S_contig20372.6721.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=282bp
IGQDAGAAGQQLGGGVKNDDDRGVAMGAGTEGQPAAAVAAATAAAGRTVP
VPVKRRMSVQVAAAVIVDKVYRNTYVCNLCLLTLAVSFMADLYPGAPSHN
VPISTALLWACSNVDGVRALRRRSFAYALSTAVLVSLLMDVDFLASDVKA
YALGQLEEEDDDLQRVIVERNMHTFGRIVVGIAAGLKALSWQGLLATFPQ
GVHALNLLWRRFKLFLPVWGSPRKLTKEVYNRVVALAWLHLLAATALAVM
AGVAGMGFEWAPQFASSQGAGIPLAAICFLKA
back to top

mRNA from alignment at Ecto-sp13_S_contig20372:2..2864+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20372.6721.1 ID=mRNA_Ecto-sp13_S_contig20372.6721.1|Name=mRNA_Ecto-sp13_S_contig20372.6721.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2863bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20372:2..2864+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGGCCAAGACGCGGGTGCGGCGGGGCAGCAGCTCGGTGGCGGCGTGAA
GAACGACGATGATCGAGGGGTCGCTATGGGAGCCGGGACCGAGGGGCAAC
CGGCGGCAGCGGTGGCCGCGGCGACGGCGGCGGCGGGTAGAACAGTGCCG
GTGCCTGTGAAGCGAAGAATGTCGGTACAAGTAGCGGCCGCTGTAATCGT
CGACAAGGTGTGATGATTTTCGAAAAAGCAAACACAGCCGAATCGAGGGA
GAGATTGGCGGCAGGAGCGTTAAAAACATAGGAAGAAAAATCCCCGAGGT
GATACAATAGGTCTCAACCCCCGGAACAGATCCACTTGGAAGGATCCTTG
TGACGCATCTACCTCACGCACATATGCAACTGGAGATCCTACTAGTTCTG
ACCCGTCGTGGCTACGTGCCGCTTTTCTCCTTCTCCCTGCAAGAGCCACA
TGAAGTCAATGGTATCGTTTTTCGATCGACGCGACAACGTTTCGGATATA
TCTGGGAGTAACCACCAAAGTGTCGCAGGAGCATCTAAACGAGAAAAGGA
TAACGACGATCCGAAGTCCGCCTAGCGAGCAATTGTTGGTACTCTTCACG
CGACAACTCGCCGGGCGCGTCAAGTCAAGAGCCGCGCTTGGGCCAAGGCC
TAGTTGGTCGGTCCTCCCCCTCCCCGGGTATAAAATACAGGGATGCCATG
GGCTACACATGCGCATGAATGCGACCATCCATTGTAGTGATTTTAACCCC
GTTTCAACATTTTCGAGAGTACGCTCCCTCGCCTCCCACCCCCCCCGCAA
CCAGGTCTACCGCAACACCTACGTCTGCAACCTCTGCCTGTTAACCTTGG
CGGTCTCCTTCATGGCCGACCTCTACCCGGGGGCTCCGTCCCACAACGTT
CCCATTTCGACCGCCCTGCTGTGGGCGTGCAGCAACGTCGACGGCGTGAG
GGCCCTGCGGAGGCGCTCCTTCGCTTACGCTCTTAGCACCGCGGTGCTCG
TGTCTCTGCTCATGGATGTCGACTTTCTCGCGTCGGACGTTAAGGTGCCA
GCGACACATTCATGGACTTACTGCACATGTGTGGCTCGGTTTCTGTAAAT
TGTTGATGGTGAGTTAGATGTGTACGCATGTATTTCTAAGTGGACGGGGA
GACCCAGGAGGGAAATCGCTGCCGGCAAGTACATTTAGTTCTATTGTTTC
AAGAGAGGTCACAGGACGTCAAGTCCAGTGTCCCTGCGTGCGGTCCTGTG
ATGGGAAGAGGGTAGCAGCTTCTTGCGTCAACATCCTAGGGCCTTCGCTA
TCTCATTGTGTATGTACGCGTTAGGATGTTCTGACCCACCTGTTCCAACA
ACCGGTACGAATCATGTGTGTTTGGCCTCTCCGTCCAGGCGTACGCATTG
GGCCAATTAGAGGAGGAGGACGACGACCTTCAGAGAGTCATCGTCGAAAG
AAACATGCACACGTTCGGGAGGATTGTGGTTGGTATCGCGGCGGGACTCA
AGGCGCTGTCCTGGCAAGGGCTGCTCGCGACCTTTCCGCAGGTGTTGAAT
ATCGCCGGTGCTTTCGTTTCACACGTCGATTCACTTAATTATATCACTTG
ATCATGTCCTCTTGAGGGTGGCGATATTCTAAACGATCCTCTCTCTGCAA
GAGGGTGTAGGTAAGCGTTCTTGGCATCCTGAAGATGAAATCAGGCCTCG
TCAGCAGGTCAACTTTACCCAAAGTCTGAGTTCAGCGCAACGATTCCTTC
CCTGTGGCAACTGGCTCGAACGAGAGTCTGCGGATGTTGTCCTGTGAAGT
TGACGACCGCGCTTACTAAGGCGCTCTTGTAGTATTTACCAAGATGTGGG
GTACCCATCCAATATCGGTGGAGGACTTCCTTCCTTGCAGGTCTAGTGTT
AACTCCATACGCTATATCTCATACCCCTAAATATGCTGGGAAAGCTTGAT
GAATGTGCACCTACCTCACTTTCAAAGTCGAAGCGAACGCGGGCCCGATC
ACCTCGAACTAGTCGTCCCTTCTCTACGACTGTTCACGTACTCAACAAAC
CATTTTTCGGACAACGAACCCGTTTCTGTGCTTCTCTAAAGGGCGTCCAT
GCGCTGAACCTGCTCTGGAGGAGGTTTAAGCTGTTCTTGCCCGTGTGGGG
GTCGCCCCGAAAGCTCACCAAGGAGGTAAGGCACTTGACGCGGTAACCCT
CTACGATATGCGCCAAACAAAGTCGATCATATGCATACCATCTTTGGTTG
TGGGCCATTTCGCACGGAACTCGTATACCGGGACAAGCCTCATGTAAACA
TGTGGAAAGTAGCGCCGTGAAGCATGCCTCGCCTGGGGTTGCGCGGTATG
CATGTTGGTCAGTAGCGGGGACCGATGCAATATATGGTCCTGAAGATATC
AGTTGCAGAACCGGCCCATGTTTCGTCCCTAAGATAATGCTGTCAACCCC
TCTAACCCTCGTCCATCAATCTGCCCGTCTATTATCCAATGAACAACCAA
CCATTGTGTGGTCGCCCCCGTAGCCTGGCTCCACCTCAGTGAGGAATGAG
TGTCCCTTTAGCAACAATAGCAGTGGCAGGGCAACAACAACACCGAGGAC
AGAGCGAATGATATGACTTGATTTCCTTGGGATCTCATGGATCATCTCAC
ACGCGGGCTCAACGCCTCCGTCGATTTTTCATCCCCCAATGTCCAACCCA
GGTGTACAACCGTGTGGTCGCCTTGGCCTGGCTCCACCTGCTTGCTGCAA
CGGCTCTCGCAGTCATGGCAGGCGTTGCAGGGATGGGGTTCGAGTGGGCT
CCGCAGTTCGCCAGCTCCCAGGGGGCGGGTATCCCGCTTGCCGCCATCTG
CTTCTTGAAGGCA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20372:2..2864+

>mRNA_Ecto-sp13_S_contig20372.6721.1 ID=mRNA_Ecto-sp13_S_contig20372.6721.1|Name=mRNA_Ecto-sp13_S_contig20372.6721.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=846bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20372:2..2864+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGGCCAAGACGCGGGTGCGGCGGGGCAGCAGCTCGGTGGCGGCGTGAA
GAACGACGATGATCGAGGGGTCGCTATGGGAGCCGGGACCGAGGGGCAAC
CGGCGGCAGCGGTGGCCGCGGCGACGGCGGCGGCGGGTAGAACAGTGCCG
GTGCCTGTGAAGCGAAGAATGTCGGTACAAGTAGCGGCCGCTGTAATCGT
CGACAAGGTCTACCGCAACACCTACGTCTGCAACCTCTGCCTGTTAACCT
TGGCGGTCTCCTTCATGGCCGACCTCTACCCGGGGGCTCCGTCCCACAAC
GTTCCCATTTCGACCGCCCTGCTGTGGGCGTGCAGCAACGTCGACGGCGT
GAGGGCCCTGCGGAGGCGCTCCTTCGCTTACGCTCTTAGCACCGCGGTGC
TCGTGTCTCTGCTCATGGATGTCGACTTTCTCGCGTCGGACGTTAAGGCG
TACGCATTGGGCCAATTAGAGGAGGAGGACGACGACCTTCAGAGAGTCAT
CGTCGAAAGAAACATGCACACGTTCGGGAGGATTGTGGTTGGTATCGCGG
CGGGACTCAAGGCGCTGTCCTGGCAAGGGCTGCTCGCGACCTTTCCGCAG
GGCGTCCATGCGCTGAACCTGCTCTGGAGGAGGTTTAAGCTGTTCTTGCC
CGTGTGGGGGTCGCCCCGAAAGCTCACCAAGGAGGTGTACAACCGTGTGG
TCGCCTTGGCCTGGCTCCACCTGCTTGCTGCAACGGCTCTCGCAGTCATG
GCAGGCGTTGCAGGGATGGGGTTCGAGTGGGCTCCGCAGTTCGCCAGCTC
CCAGGGGGCGGGTATCCCGCTTGCCGCCATCTGCTTCTTGAAGGCA
back to top