mRNA_Ecto-sp13_S_contig20363.6717.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20363.6717.1
Unique NamemRNA_Ecto-sp13_S_contig20363.6717.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20363.6717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20363contigEcto-sp13_S_contig20363:1392..2945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size459
Hectar predicted targeting categoryother localisation
Exons4
Cds size459
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463022.07618-CDS-Ecto-sp13_S_contig20363:1391..14631681463022.07618-CDS-Ecto-sp13_S_contig20363:1391..1463Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20363 1392..1463 -
1681463022.085453-CDS-Ecto-sp13_S_contig20363:1844..19761681463022.085453-CDS-Ecto-sp13_S_contig20363:1844..1976Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20363 1845..1976 -
1681463022.0943034-CDS-Ecto-sp13_S_contig20363:2249..23751681463022.0943034-CDS-Ecto-sp13_S_contig20363:2249..2375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20363 2250..2375 -
1681463022.1030157-CDS-Ecto-sp13_S_contig20363:2816..29451681463022.1030157-CDS-Ecto-sp13_S_contig20363:2816..2945Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20363 2817..2945 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20363.6717.1prot_Ecto-sp13_S_contig20363.6717.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20363 1392..2945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20363.6717.1

>prot_Ecto-sp13_S_contig20363.6717.1 ID=prot_Ecto-sp13_S_contig20363.6717.1|Name=mRNA_Ecto-sp13_S_contig20363.6717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp
QGNFEEADGNYEQCVAIKVRARGPRHHDVAVSLHDWAVMLYMKSEFEEAE
YLLQKSLSIREEALGSDHPDVAQSLKSMAGVFYTQQGRYDEAIQLYARSH
EIHENLLGHDHPEVATSFHTRARLLDNAKMYDAAAPLFESALEIRTRILG
ADH
back to top

mRNA from alignment at Ecto-sp13_S_contig20363:1392..2945-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20363.6717.1 ID=mRNA_Ecto-sp13_S_contig20363.6717.1|Name=mRNA_Ecto-sp13_S_contig20363.6717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1554bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20363:1392..2945- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGCAATTTCGAGGAGGCAGACGGTAATTATGAGCAGTGCGTGGCGAT
AAAAGTACGGGCTCGGGGACCACGACATCACGACGTTGCCGTTTCGCTGC
ACGACTGGGCGGTCATGCTGTACATGAAGGTAGGCGGGCCACCGCGGGTG
CGGCCTTCGTTAGGTGCTCGTATCGCCATAGGTTTCGTTTGGGCTTTGCC
TGCAGAGGAGTCTTTGCAAGCTGGGAGCGAGCACGAGGAATAGTTTCAGA
AGGCTCCAACCCCGTCAAGGCAATTTTTTGGCCAAAAGCAGATTGAAGAA
ATTTATGCGGGGAGAATATTACCAGGAATGACTACACGTACCTTGTAGTT
GCGATGACGCTTAAGGTAGTCGAAGAAAACTGACGACCCGTTGGCAAAGG
CAGTTTGTCAATATCAGTGGCAAAGTGTAATCCACTCCTCATTTGGCAAC
ATCGGGAGCAGGACTGGTCGGTTACCGATTCAACAATTCGGACGAGTGAA
TCCTTTCGCAATGCACACGTCTGTTGGCGAACGTTCTGTGAATTGCGTCG
CACCGCCATTCTCTTCCTAGAGTGAGTTCGAGGAGGCGGAGTATCTCCTG
CAGAAGTCCCTGTCGATCAGGGAGGAGGCTCTAGGTTCGGATCACCCCGA
TGTTGCACAGTCGCTCAAAAGTATGGCGGGAGTGTTCTACACGCAGGTGT
GTTTCGAGTGACCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGATGA
AAGCGTCAATTGATTTGCCAGTTGCCGGGATCCACCGTTCGACTCAGTTA
CTGGTAGCTAGCATGAGCATGACTTTGGGCTCTCTCCTCGTGTTGTTGTG
CTTACTCGTGTGCCTCGAAAGGGGTGCGGGAAGTGATGAGAGCAAGCATC
GAGGGCCTGCTCAGTAGAATCGTTGCTTAAACTGTTGTACCTTTGTGATG
TATGTACTGCTGCGATGAGCAGGGAAGGTATGACGAGGCGATCCAGTTGT
ACGCCCGTTCGCATGAGATCCATGAGAACCTTCTAGGCCACGACCATCCA
GAGGTGGCCACGTCGTTCCACACCCGGGCAAGGTTGCTAGATAACGCGAA
GGTGAAAGAGATCATTTCTGTTTGCCCTTTTGTCGGACAACTCGGCACAT
CTGCCTCGATTGTGGTTTAGGATATTTCGAGGCACTGGTGACGGGTGCAG
AACATCCACCTGTTCATGGAGCAGTCTGGACGTACTTGAACATACGTTTT
CTTGGTCTGCCGAGTCCGAGGTATTTTCTGCCGAACGATGTCTAGAAGTG
ACCACCAGACCACTCGTGGGCATTGCAGAAACGATCACCCTTGTGCAACA
AAAAAATGCCGACTAGTCTATTCCCAACGCCCAGGCCCCGTGCAAAATTG
GCCTTTGGCGCATCAGATGAAGCTATGGAAGGCTTCTACCATCGAAGTCC
ACACGATCGATCAATTTTTCCCACGCATACAGATGTATGATGCGGCTGCG
CCGCTCTTTGAGTCAGCCTTGGAAATCCGGACGAGGATTCTGGGAGCTGA
TCAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20363:1392..2945-

>mRNA_Ecto-sp13_S_contig20363.6717.1 ID=mRNA_Ecto-sp13_S_contig20363.6717.1|Name=mRNA_Ecto-sp13_S_contig20363.6717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20363:1392..2945- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGCAATTTCGAGGAGGCAGACGGTAATTATGAGCAGTGCGTGGCGAT
AAAAGTACGGGCTCGGGGACCACGACATCACGACGTTGCCGTTTCGCTGC
ACGACTGGGCGGTCATGCTGTACATGAAGAGTGAGTTCGAGGAGGCGGAG
TATCTCCTGCAGAAGTCCCTGTCGATCAGGGAGGAGGCTCTAGGTTCGGA
TCACCCCGATGTTGCACAGTCGCTCAAAAGTATGGCGGGAGTGTTCTACA
CGCAGCAGGGAAGGTATGACGAGGCGATCCAGTTGTACGCCCGTTCGCAT
GAGATCCATGAGAACCTTCTAGGCCACGACCATCCAGAGGTGGCCACGTC
GTTCCACACCCGGGCAAGGTTGCTAGATAACGCGAAGATGTATGATGCGG
CTGCGCCGCTCTTTGAGTCAGCCTTGGAAATCCGGACGAGGATTCTGGGA
GCTGATCAC
back to top