mRNA_Ecto-sp13_S_contig20361.6715.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20361.6715.1
Unique NamemRNA_Ecto-sp13_S_contig20361.6715.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20361.6715.1 vs. uniprot
Match: A0A6H5JDI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI9_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 3.180e-37
Identity = 79/86 (91.86%), Postives = 79/86 (91.86%), Query Frame = -1 
Query:   37 VVPRPAQILPAHPDAARDLAAVCRCLGELGASAFTSSSPALMGAARPYWSSPANTATAAARDKGKTAAAAGGGEDVATQPGVALVA 294
            VVPRPAQ LPAHPDAARDLAAVCRCLGELGASAFTSSSPAL GAA PYWSSPA TATAAARDKG T AAA GGEDVATQPGVALVA
Sbjct:  621 VVPRPAQTLPAHPDAARDLAAVCRCLGELGASAFTSSSPALRGAAAPYWSSPAKTATAAARDKGNTGAAASGGEDVATQPGVALVA 706
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20361.6715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDI9_9PHAE3.180e-3791.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20361contigEcto-sp13_S_contig20361:1802..2285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size484
Hectar predicted targeting categoryother localisation
Exons1
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463022.0288835-CDS-Ecto-sp13_S_contig20361:1801..22841681463022.0288835-CDS-Ecto-sp13_S_contig20361:1801..2284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20361 1802..2284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20361.6715.1prot_Ecto-sp13_S_contig20361.6715.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20361 1802..2284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20361.6715.1

>prot_Ecto-sp13_S_contig20361.6715.1 ID=prot_Ecto-sp13_S_contig20361.6715.1|Name=mRNA_Ecto-sp13_S_contig20361.6715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
SAQPCPNPRCSSCHQRHAGLCRYILTSTRRRRCFALISRRRRRGVGGRGP
VRPCRPHQRRRRRGERRRAELAEAPAHRRQVTRGVRVSGQNLGGARHNNR
RRAPLLLLLLSAGPQNAGHRRRRRRWQRRHRHTRSSCCRRRRRRRRSDRR
FFARRSSRDVA
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mRNA from alignment at Ecto-sp13_S_contig20361:1802..2285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20361.6715.1 ID=mRNA_Ecto-sp13_S_contig20361.6715.1|Name=mRNA_Ecto-sp13_S_contig20361.6715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=484bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20361:1802..2285+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTGCTCAGCCTTGCCCAAATCCTCGCTGCTCTTCATGCCACCAACGCCA
CGCCGGGCTGTGTCGCTACATCCTCACCTCCACCCGCCGCCGCCGCTGTT
TTGCCCTTATCTCTCGCCGCCGCCGTCGCGGTGTTGGCGGGAGAGGACCA
GTACGGCCGTGCCGCCCCCATCAACGCCGGCGACGACGAGGTGAACGCCG
ACGCGCCGAGCTCGCCGAGGCACCGGCACACCGCCGCCAGGTCACGCGCG
GCGTCCGGGTGAGCGGGCAAAATCTGGGCGGGGCGAGGCACAACAACAGA
CGACGAGCGCCGTTGCTGCTGCTGCTGCTGTCCGCTGGACCTCAGAACGC
GGGCCACCGCCGCCGAAGGCGGAGGTGGCAGCGCCGCCACCGCCACACCC
GCAGCAGTTGTTGTCGCCGCCGCCGCCGCCGCCGCCGCAGTGATCGGCGT
TTCTTCGCGCGGCGCAGCAGCCGCGACGTTGCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20361:1802..2285+

>mRNA_Ecto-sp13_S_contig20361.6715.1 ID=mRNA_Ecto-sp13_S_contig20361.6715.1|Name=mRNA_Ecto-sp13_S_contig20361.6715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20361:1802..2285+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTGCTCAGCCTTGCCCAAATCCTCGCTGCTCTTCATGCCACCAACGCCA
CGCCGGGCTGTGTCGCTACATCCTCACCTCCACCCGCCGCCGCCGCTGTT
TTGCCCTTATCTCTCGCCGCCGCCGTCGCGGTGTTGGCGGGAGAGGACCA
GTACGGCCGTGCCGCCCCCATCAACGCCGGCGACGACGAGGTGAACGCCG
ACGCGCCGAGCTCGCCGAGGCACCGGCACACCGCCGCCAGGTCACGCGCG
GCGTCCGGGTGAGCGGGCAAAATCTGGGCGGGGCGAGGCACAACAACAGA
CGACGAGCGCCGTTGCTGCTGCTGCTGCTGTCCGCTGGACCTCAGAACGC
GGGCCACCGCCGCCGAAGGCGGAGGTGGCAGCGCCGCCACCGCCACACCC
GCAGCAGTTGTTGTCGCCGCCGCCGCCGCCGCCGCCGCAGTGATCGGCGT
TTCTTCGCGCGGCGCAGCAGCCGCGACGTTGCT
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