mRNA_Ecto-sp13_S_contig2036.6713.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig2036.6713.1 vs. uniprot
Match: D8LGU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGU9_ECTSI) HSP 1 Score: 489 bits (1258), Expect = 7.040e-164 Identity = 412/505 (81.58%), Postives = 417/505 (82.57%), Query Frame = 1
Query: 298 SGSPRTGSVGQPGSSRRFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVASPLHLLGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLHDQHQQRSRHLAGXXXXXXXXXXXXXXXXXXXXXSRGPAPPPTTTQLPSLLPFADAVLRSRGGDSRGSTQVESGGGXXXXXXXRDAGATGFGAFQARQEQSAQPQGHHYESYEHKRSGSAEMHPSVAAHAEGRAYYNHAAGESDGRSSHHHLHRGGSSGERPPSLVHTAAAPVSAHDRLRHQPHGGGISAGRDRTSSVLAXXXXXXXXXXXXXXX-SGNGGAPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTARGPNAPRWMLSIDERKVERPRSPRGSSAARLTRAEEQARMGGTAAAAXXXXXXXASAELRATSIAPAFKPSLMVDSEQATAAMCATEPSGSGGVAASRAGGDAQPGSVSVSNHLSVRIPTQGGGGVVNGASPEGARR 1809
SGSPRTG VGQPGSSRRFP XXXXXXXXXXXXXXXXXXXX SVASPLHLLGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX HLHDQHQQR RHLAG SRGPAPPPTTTQLPSLLPFADAVLRSRGGDSRG+TQVESGGG RDAGATGFGAFQARQEQSAQPQ HYESYEHKRSGSAEMH SVAA AEGRAYY+HAAGES GSSGERPPSL+HTA AP++ DRL HQPHGGGISAGRDRTSSVL XXXXXXXXXXXXXXX SGNGGAPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MTARGPNAPRWMLSIDERKVERPRSPRGSS ARLT AEEQARMGGTAAAA XXXX AS ELRATSIAPAF PS MV SEQATAAMCATEP GSGGV ASRAGGDAQPGSVS SNHLSVRIPTQGGGG VNGASPEGARR
Sbjct: 6 SGSPRTGPVGQPGSSRRFPPQASGSNAVSXXXXXXXXXXXXXXXXXXXX--SVASPLHLLGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMH------HLHDQHQQRGRHLAGGALGVGTSGTGNGSGGVPQHHSRGPAPPPTTTQLPSLLPFADAVLRSRGGDSRGNTQVESGGGGG-----RDAGATGFGAFQARQEQSAQPQRQHYESYEHKRSGSAEMHTSVAAQAEGRAYYSHAAGESGXXXXXXXXXXXGSSGERPPSLLHTAVAPIAVPDRLHHQPHGGGISAGRDRTSSVLXXXXXXXXXXXXXXXXXSGNGGAPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAMTARGPNAPRWMLSIDERKVERPRSPRGSSVARLTPAEEQARMGGTAAAAGXXXXQAASEELRATSIAPAFNPSPMVGSEQATAAMCATEPPGSGGVGASRAGGDAQPGSVSSSNHLSVRIPTQGGGGGVNGASPEGARR 497
BLAST of mRNA_Ecto-sp13_S_contig2036.6713.1 vs. uniprot
Match: A0A6H5K1H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H2_9PHAE) HSP 1 Score: 514 bits (1325), Expect = 2.770e-158 Identity = 504/748 (67.38%), Postives = 510/748 (68.18%), Query Frame = 1
Query: 1 MHVSHDSGAMDGVNPQQXXXXXXXXXXXXRERDASASEGVRGGRSSPVGQGEGGSPRQFYGDLH-HQQHQRETAAVPTLGGAAXXXXXXXXSFAGSNVGPSGSPRTGSVGQPGSSRRFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVASPLHLLGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLHDQHQQRSRHLAGXXXXXXXXXXXXXXXXXXXXX--------SRGPAPPPTTTQLPSLLPFADAVLRSRGGDSRGSTQVESGGGXXXXXXX-RDAGATGFGAFQARQEQSAQPQGHHYESYEHKRSGSAEMHPSVAAHAEGRAYYNHAAGESDGRSSHHHLHRGGSSGERPPSLVHTAAAPVSAHDRLRHQPHGGGISAGRDRTSSVLAXXXXXXXXXXXXXXXSGNGGAPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTARGPNAPRWMLSIDERKVERPRSPRGSSAARLTRAEEQARMGGTAAAAXXXXXXXASAELR------------------------------------------------------------------------------------------------ATSIAPAFKPSLMVDSEQATAAMCATEPSGSGGVAASRAGGDAQPGSVSVSNHLSVRIPTQGGGGVVNGASPEGARRGEKRPRLSEGEGFEGFASADPAASAMDTSGANAAMDSGR 1926
MHVSHDSGAMDGVNPQQ RERDASASE VRG RSSPVG+GEGGS RQFYGD H H QR XXXXX SFAGSNVGPSGSPRTG VGQPGSSRRFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SVASPLHLLGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX HLHDQHQQR RHLAG XXXXXXXXXXXX SRGPAPPPTTTQLPSLLPFADAVLRSRGGDSRGST+VESGG XXXXXXX RDAGATGFGAF ARQEQSAQPQ HHYESYEH+RSGSAEMHPS+AA AEGRAYYNHAAGESDG S H XXXXXXXXXXXXXXXSGNGGAPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTA GPNAPRWMLSIDERKVERPRSPRGSSAARLT AE+QARMGGTAAAA AS E R ATSIAPAF MVDSEQATAAMCATEP GSGGVAAS+AGGDAQPGSV SNHLSVRIPTQGGGGVVNGASPEGARRGEKRPRLSEGEGFEGFASADPAAS MDTSGANAAMDSGR
Sbjct: 2988 MHVSHDSGAMDGVNPQQGRW---------RERDASASESVRGDRSSPVGEGEGGSLRQFYGDHHPHNHQQRXXXXXXXXXXXXXXXXXASASFAGSNVGPSGSPRTGPVGQPGSSRRFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--SVASPLHLLGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANMH-----HLHDQHQQRGRHLAGGAGSLGTSGXXXXXXXXXXXXXXXXPQHHSRGPAPPPTTTQLPSLLPFADAVLRSRGGDSRGSTKVESGGXXXXXXXXXRDAGATGFGAFHARQEQSAQPQRHHYESYEHQRSGSAEMHPSLAAQAEGRAYYNHAAGESDGSSIH----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGNGGAPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTALGPNAPRWMLSIDERKVERPRSPRGSSAARLTPAEDQARMGGTAAAAGSGAVQAASEEPRGAGRRDWGGSVGVGSVAESGEGGXXXXXXXXXXXSVAPQSGQRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGIAGQEGGGRGSGANSSTTATSIAPAFNRLPMVDSEQATAAMCATEPPGSGGVAASKAGGDAQPGSVYASNHLSVRIPTQGGGGVVNGASPEGARRGEKRPRLSEGEGFEGFASADPAASGMDTSGANAAMDSGR 3703 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2036.6713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig2036.6713.1 >prot_Ecto-sp13_S_contig2036.6713.1 ID=prot_Ecto-sp13_S_contig2036.6713.1|Name=mRNA_Ecto-sp13_S_contig2036.6713.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=644bp MHVSHDSGAMDGVNPQQQQQQQQRQQGRWRERDASASEGVRGGRSSPVGQback to top mRNA from alignment at Ecto-sp13_S_contig2036:1561..4591- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig2036.6713.1 ID=mRNA_Ecto-sp13_S_contig2036.6713.1|Name=mRNA_Ecto-sp13_S_contig2036.6713.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3031bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2036:1561..4591- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2036:1561..4591- >mRNA_Ecto-sp13_S_contig2036.6713.1 ID=mRNA_Ecto-sp13_S_contig2036.6713.1|Name=mRNA_Ecto-sp13_S_contig2036.6713.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1932bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2036:1561..4591- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |