mRNA_Ecto-sp13_S_contig20359.6712.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20359.6712.1
Unique NamemRNA_Ecto-sp13_S_contig20359.6712.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Match: A0A6H5JPX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX3_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 2.990e-87
Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 1
Query:    1 QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVDDQLVSPKDGEAYARQ 396
            +VILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDV DQLVSPKDGEAYARQ
Sbjct:    8 KVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVSDQLVSPKDGEAYARQ 139          
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Match: D8LCK0_ECTSI (Rab11D, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK0_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 6.760e-86
Identity = 128/136 (94.12%), Postives = 129/136 (94.85%), Query Frame = 1
Query:    1 QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVDDQLVSPKDGEAYARQVSGG 408
            +VILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLL YD TNR SFVGLEAWRKHLEANADPRCVSIV GNKSDV DQLVSP DGEAYARQVS G
Sbjct:    8 KVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLFYDFTNRFSFVGLEAWRKHLEANADPRCVSIVTGNKSDVSDQLVSPNDGEAYARQVSRG 143          
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Match: A0A835YTJ1_9STRA (GTPase Ypt3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTJ1_9STRA)

HSP 1 Score: 192 bits (489), Expect = 4.860e-60
Identity = 95/130 (73.08%), Postives = 113/130 (86.92%), Query Frame = 1
Query:    1 QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVDDQLVSPKDGEAYA 390
            +V+LLGNSGVGKSNLIAR+H N+FS +F ST+GVEFVTK+I VDGV ++LQIWDTAGQERYASMMKTYYRKAKG+LLVYDVT++SSF  LE WRK+LEANADP+CVS+VAGNK D++  +V      AYA
Sbjct:    7 KVVLLGNSGVGKSNLIARYHANEFSNEFMSTIGVEFVTKKIEVDGVAIRLQIWDTAGQERYASMMKTYYRKAKGALLVYDVTSQSSFDSLEIWRKNLEANADPQCVSMVAGNKCDMEG-VVDEAAARAYA 135          
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Match: A0A836CB79_9STRA (Ras family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB79_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.880e-51
Identity = 86/131 (65.65%), Postives = 107/131 (81.68%), Query Frame = 1
Query:    1 QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVDDQLVSPKDGEAYAR 393
            +VILLG+SGVGKSNLIAR+H++ FS +F ST+GVEFVTK+I VDG  V LQIWDTAGQERYA+MMKTYYR+AKG++LVYDVT+ +SF  LE WR  L  NA P CV++VAGNK D++   VS +  +AYA+
Sbjct:   39 KVILLGSSGVGKSNLIARYHSDSFSTEFMSTIGVEFVTKKIEVDGQAVWLQIWDTAGQERYAAMMKTYYRRAKGAVLVYDVTDATSFEALELWRAALGTNAAPDCVAVVAGNKCDME-PAVSAQQAQAYAQ 168          
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Match: A0A4S8K953_MUSBA (Uncharacterized protein n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8K953_MUSBA)

HSP 1 Score: 147 bits (372), Expect = 2.380e-42
Identity = 73/135 (54.07%), Postives = 98/135 (72.59%), Query Frame = 1
Query:    1 QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVDDQLVSP-KDGEAYARQVS 402
            +V+L+G+SGVGKSNL++RF  N+FS + +ST+GVEF T+ +TVDG  VK QIWDTAGQERY ++   YYR A G+LLVYDVT  ++F  +E W K L  + DP  V ++ GNKSD+   +  P +DGEAYA + S
Sbjct:   15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLTVDGKVVKAQIWDTAGQERYRAITSAYYRGAIGALLVYDVTRHATFENVERWLKELRGHTDPNIVVMLIGNKSDLRHLVAVPTEDGEAYAERES 149          
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Match: A0A804IKA7_MUSAM ((wild Malaysian banana) hypothetical protein n=3 Tax=Musaceae TaxID=4637 RepID=A0A804IKA7_MUSAM)

HSP 1 Score: 147 bits (372), Expect = 3.670e-42
Identity = 73/135 (54.07%), Postives = 98/135 (72.59%), Query Frame = 1
Query:    1 QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVDDQLVSP-KDGEAYARQVS 402
            +V+L+G+SGVGKSNL++RF  N+FS + +ST+GVEF T+ +TVDG  VK QIWDTAGQERY ++   YYR A G+LLVYDVT  ++F  +E W K L  + DP  V ++ GNKSD+   +  P +DGEAYA + S
Sbjct:   15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLTVDGKVVKAQIWDTAGQERYRAITSAYYRGAIGALLVYDVTRHATFENVERWLKELRGHTDPNIVVMLIGNKSDLRHLVAVPTEDGEAYAERES 149          
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Match: A0A3P5YDW4_BRACM ((field mustard) hypothetical protein n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A3P5YDW4_BRACM)

HSP 1 Score: 146 bits (368), Expect = 3.970e-42
Identity = 70/135 (51.85%), Postives = 100/135 (74.07%), Query Frame = 1
Query:    1 QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVDDQLVSP-KDGEAYARQVS 402
            +V+L+G+SGVGKSNL++RF  N+F+ + +ST+GVEF T+ +TV+G  +K QIWDTAGQERY ++   YYR A G+LLVYDVT R++F  ++ W K L+ + DP  V ++ GNKSD+   L  P +DG++YA Q S
Sbjct:   15 KVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLTVEGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENIDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQES 149          
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Match: A0A7S2RFG9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFG9_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.600e-41
Identity = 73/131 (55.73%), Postives = 99/131 (75.57%), Query Frame = 1
Query:    1 QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVDD-QLVSPKDGEAYA 390
            +V+LLGN  VGKSNL+AR +++ FS D  +TVG+EFVTK +TVDG  VK QIWDTAGQER+++MM TYYRKAKG+LL++ VT+R SFV  EAWR+ +   A+P    ++ GNK DV + + VSP++ +  A
Sbjct:   17 KVVLLGNPRVGKSNLLARLNDDSFSPDNSNTVGIEFVTKTMTVDGEAVKAQIWDTAGQERFSTMMGTYYRKAKGALLLFSVTDRESFVDAEAWRQQVTELAEPDIEVLLVGNKVDVQESRKVSPEEAQTMA 147          
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Match: A0A078HTI1_BRANA ((rape) hypothetical protein n=24 Tax=Brassicales TaxID=3699 RepID=A0A078HTI1_BRANA)

HSP 1 Score: 145 bits (366), Expect = 2.870e-41
Identity = 70/135 (51.85%), Postives = 100/135 (74.07%), Query Frame = 1
Query:    1 QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVDDQLVSP-KDGEAYARQVS 402
            +V+L+G+SGVGKSNL++RF  N+F+ + +ST+GVEF T+ +TV+G  +K QIWDTAGQERY ++   YYR A G+LLVYDVT R++F  ++ W K L+ + DP  V ++ GNKSD+   L  P +DG++YA Q S
Sbjct:   15 KVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLTVEGKVIKSQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQES 149          
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Match: RAA1B_ARATH (Ras-related protein RABA1b n=4 Tax=Brassicaceae TaxID=3700 RepID=RAA1B_ARATH)

HSP 1 Score: 145 bits (366), Expect = 2.870e-41
Identity = 71/135 (52.59%), Postives = 99/135 (73.33%), Query Frame = 1
Query:    1 QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVDDQLVSP-KDGEAYARQVS 402
            +V+L+G+SGVGKSNL++RF  N+F+ + +ST+GVEF T+ + VDG  VK QIWDTAGQERY ++   YYR A G+LLVYDVT R++F  ++ W K L+ + DP  V ++ GNKSD+   L  P +DG++YA Q S
Sbjct:   15 KVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQES 149          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPX3_9PHAE2.990e-8798.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCK0_ECTSI6.760e-8694.12Rab11D, RAB family GTPase n=1 Tax=Ectocarpus silic... [more]
A0A835YTJ1_9STRA4.860e-6073.08GTPase Ypt3 n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A836CB79_9STRA1.880e-5165.65Ras family-domain-containing protein n=1 Tax=Tribo... [more]
A0A4S8K953_MUSBA2.380e-4254.07Uncharacterized protein n=1 Tax=Musa balbisiana Ta... [more]
A0A804IKA7_MUSAM3.670e-4254.07(wild Malaysian banana) hypothetical protein n=3 T... [more]
A0A3P5YDW4_BRACM3.970e-4251.85(field mustard) hypothetical protein n=1 Tax=Brass... [more]
A0A7S2RFG9_9STRA1.600e-4155.73Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A078HTI1_BRANA2.870e-4151.85(rape) hypothetical protein n=24 Tax=Brassicales T... [more]
RAA1B_ARATH2.870e-4152.59Ras-related protein RABA1b n=4 Tax=Brassicaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20359contigEcto-sp13_S_contig20359:709..2165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score257.3
Seed ortholog evalue4e-66
Seed eggNOG ortholog2880.D8LCK0
Model size408
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0087@2759
Ec32 ortholog descriptionRab11D, RAB family GTPase
Ec32 orthologEc-03_002620.1
Cds size408
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463021.7331882-CDS-Ecto-sp13_S_contig20359:708..8431681463021.7331882-CDS-Ecto-sp13_S_contig20359:708..843Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20359 709..843 -
1681463021.7533617-CDS-Ecto-sp13_S_contig20359:1351..14711681463021.7533617-CDS-Ecto-sp13_S_contig20359:1351..1471Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20359 1352..1471 -
1681463021.7634313-CDS-Ecto-sp13_S_contig20359:2012..21651681463021.7634313-CDS-Ecto-sp13_S_contig20359:2012..2165Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20359 2013..2165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20359.6712.1prot_Ecto-sp13_S_contig20359.6712.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20359 709..2165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20359.6712.1

>prot_Ecto-sp13_S_contig20359.6712.1 ID=prot_Ecto-sp13_S_contig20359.6712.1|Name=mRNA_Ecto-sp13_S_contig20359.6712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKL
QIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEAN
ADPRCVSIVAGNKSDVDDQLVSPKDGEAYARQVSGG
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mRNA from alignment at Ecto-sp13_S_contig20359:709..2165-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20359.6712.1 ID=mRNA_Ecto-sp13_S_contig20359.6712.1|Name=mRNA_Ecto-sp13_S_contig20359.6712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1457bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20359:709..2165- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTATTCTCCTTGGGAATAGCGGCGTCGGGAAGAGCAACCTGATCGC GCGGTTTCACAACAACGACTTCTCGGAAGACTTCGAGAGCACGGTTGGGG TGGAGTTCGTGACGAAGAGGATCACAGTCGATGGCGTTCCCGTCAAGCTC CAGGTGATTGCTGCTTTTTCCCGGTGACAAAAAGGCGACCGAATAGACGG ACGCGCTGCGTGCCCGGATCGTGCCTCTGCTTGAAAAGAAGTATTCTTGT ATATTACAGGGGCATGGTGTGGCCGTTGGGAATGTGGGTGCTGTGCATGC GTTCCACGACATGGCGCCGTCGATGGGGTTCATTCAAATCAGTAAATTCG CGCCGCGTCCTGTTGTGTGCCACCGCTGTTTGTGTGTGTCTCGTTTCATG TCTGATCCACATCCCACGGCTCAGGGATCATGGGGCCGCACCGCTCTACT TCGTCGGCATTGAGAACAGACAGTTCGCAACGTCAGTATGCCTACAACAC AGCGCTTTCGATTGGCGCGTAACGGTTTTTAGTGTGAAGCCAATGCTAAG AAACGCTTTTGGCGCGCCTTGCACGCTAGTTGCATGCGCGCCCGCAATTA GTGTTCCACGCCTAAGCTCGGCTGTCCATGCCACCCTTCCCCGCGTTGCC GACCGACCTTCAACGCCACGAAACGGCGACGACGACGGCGTCAGATTTGG GACACCGCGGGCCAGGAGCGATACGCGAGCATGATGAAGACGTACTACCG AAAGGCGAAGGGTTCGCTTTTGGTCTATGACGTCACGAACAGATCTTCCT TCGTGGGACTCGAGGTGAACAGGGGGGACAAAGGGCACGAAATGCCTGCC CGCGAGAAAAGGGAAGTCCGGGAGGAGCGTGAGGGGCTACTGGGGGGGCC GCAGGAGATACGGTCGTCATTCCGTGCGCTCTCGGAATTGAAACAAGTCC ACACGGGCGATGTGTCCCGCCCAAGATGAAACGCTGCGGGACAGTCGTCC AGCGCGGTCGAATGCTTTTGAGCCGATTTTCTTTTCTCCATTGTTTTCGT TGTTGAAGGCTTGGTGTGTTGCGGATGACCGCAACTGCTATGAGCAGATC GGGAATGAACGGCGCCTGTCAAGACGCTTGTGCTGCTTCTCTTTCTCCTG CTGTTGCCTCTGCTTGCGCGTGGTTCGGGATTGGTCGGTCGGCGGGGGTT CTGGAGAGTTTTTGTCGTCGCCCTGCTACTATACGCCCCTGCGCCTAAGA ATGTATCCCTCTGCGCGCGTTGCTCAGGACTTTTGTTGCTTATTCCCGGC GCTGGTGCTGTTGCTCGCGCAGGCCTGGCGCAAGCACCTCGAAGCCAACG CGGACCCAAGGTGCGTGTCCATCGTGGCGGGTAACAAGTCGGACGTGGAC GACCAGCTGGTCAGTCCGAAGGACGGGGAAGCCTACGCTAGACAGGTGAG CGGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20359:709..2165-

>mRNA_Ecto-sp13_S_contig20359.6712.1 ID=mRNA_Ecto-sp13_S_contig20359.6712.1|Name=mRNA_Ecto-sp13_S_contig20359.6712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20359:709..2165- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTATTCTCCTTGGGAATAGCGGCGTCGGGAAGAGCAACCTGATCGC
GCGGTTTCACAACAACGACTTCTCGGAAGACTTCGAGAGCACGGTTGGGG
TGGAGTTCGTGACGAAGAGGATCACAGTCGATGGCGTTCCCGTCAAGCTC
CAGATTTGGGACACCGCGGGCCAGGAGCGATACGCGAGCATGATGAAGAC
GTACTACCGAAAGGCGAAGGGTTCGCTTTTGGTCTATGACGTCACGAACA
GATCTTCCTTCGTGGGACTCGAGGCCTGGCGCAAGCACCTCGAAGCCAAC
GCGGACCCAAGGTGCGTGTCCATCGTGGCGGGTAACAAGTCGGACGTGGA
CGACCAGCTGGTCAGTCCGAAGGACGGGGAAGCCTACGCTAGACAGGTGA
GCGGGGGG
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