mRNA_Ecto-sp13_S_contig20359.6712.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Match: A0A6H5JPX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX3_9PHAE) HSP 1 Score: 261 bits (667), Expect = 2.990e-87 Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 1
Query: 1 QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVDDQLVSPKDGEAYARQ 396
+VILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDV DQLVSPKDGEAYARQ
Sbjct: 8 KVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVSDQLVSPKDGEAYARQ 139
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Match: D8LCK0_ECTSI (Rab11D, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK0_ECTSI) HSP 1 Score: 256 bits (653), Expect = 6.760e-86 Identity = 128/136 (94.12%), Postives = 129/136 (94.85%), Query Frame = 1
Query: 1 QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVDDQLVSPKDGEAYARQVSGG 408
+VILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLL YD TNR SFVGLEAWRKHLEANADPRCVSIV GNKSDV DQLVSP DGEAYARQVS G
Sbjct: 8 KVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLFYDFTNRFSFVGLEAWRKHLEANADPRCVSIVTGNKSDVSDQLVSPNDGEAYARQVSRG 143
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Match: A0A835YTJ1_9STRA (GTPase Ypt3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTJ1_9STRA) HSP 1 Score: 192 bits (489), Expect = 4.860e-60 Identity = 95/130 (73.08%), Postives = 113/130 (86.92%), Query Frame = 1
Query: 1 QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVDDQLVSPKDGEAYA 390
+V+LLGNSGVGKSNLIAR+H N+FS +F ST+GVEFVTK+I VDGV ++LQIWDTAGQERYASMMKTYYRKAKG+LLVYDVT++SSF LE WRK+LEANADP+CVS+VAGNK D++ +V AYA
Sbjct: 7 KVVLLGNSGVGKSNLIARYHANEFSNEFMSTIGVEFVTKKIEVDGVAIRLQIWDTAGQERYASMMKTYYRKAKGALLVYDVTSQSSFDSLEIWRKNLEANADPQCVSMVAGNKCDMEG-VVDEAAARAYA 135
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Match: A0A836CB79_9STRA (Ras family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB79_9STRA) HSP 1 Score: 172 bits (435), Expect = 1.880e-51 Identity = 86/131 (65.65%), Postives = 107/131 (81.68%), Query Frame = 1
Query: 1 QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVDDQLVSPKDGEAYAR 393
+VILLG+SGVGKSNLIAR+H++ FS +F ST+GVEFVTK+I VDG V LQIWDTAGQERYA+MMKTYYR+AKG++LVYDVT+ +SF LE WR L NA P CV++VAGNK D++ VS + +AYA+
Sbjct: 39 KVILLGSSGVGKSNLIARYHSDSFSTEFMSTIGVEFVTKKIEVDGQAVWLQIWDTAGQERYAAMMKTYYRRAKGAVLVYDVTDATSFEALELWRAALGTNAAPDCVAVVAGNKCDME-PAVSAQQAQAYAQ 168
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Match: A0A4S8K953_MUSBA (Uncharacterized protein n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8K953_MUSBA) HSP 1 Score: 147 bits (372), Expect = 2.380e-42 Identity = 73/135 (54.07%), Postives = 98/135 (72.59%), Query Frame = 1
Query: 1 QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVDDQLVSP-KDGEAYARQVS 402
+V+L+G+SGVGKSNL++RF N+FS + +ST+GVEF T+ +TVDG VK QIWDTAGQERY ++ YYR A G+LLVYDVT ++F +E W K L + DP V ++ GNKSD+ + P +DGEAYA + S
Sbjct: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLTVDGKVVKAQIWDTAGQERYRAITSAYYRGAIGALLVYDVTRHATFENVERWLKELRGHTDPNIVVMLIGNKSDLRHLVAVPTEDGEAYAERES 149
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Match: A0A804IKA7_MUSAM ((wild Malaysian banana) hypothetical protein n=3 Tax=Musaceae TaxID=4637 RepID=A0A804IKA7_MUSAM) HSP 1 Score: 147 bits (372), Expect = 3.670e-42 Identity = 73/135 (54.07%), Postives = 98/135 (72.59%), Query Frame = 1
Query: 1 QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVDDQLVSP-KDGEAYARQVS 402
+V+L+G+SGVGKSNL++RF N+FS + +ST+GVEF T+ +TVDG VK QIWDTAGQERY ++ YYR A G+LLVYDVT ++F +E W K L + DP V ++ GNKSD+ + P +DGEAYA + S
Sbjct: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLTVDGKVVKAQIWDTAGQERYRAITSAYYRGAIGALLVYDVTRHATFENVERWLKELRGHTDPNIVVMLIGNKSDLRHLVAVPTEDGEAYAERES 149
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Match: A0A3P5YDW4_BRACM ((field mustard) hypothetical protein n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A3P5YDW4_BRACM) HSP 1 Score: 146 bits (368), Expect = 3.970e-42 Identity = 70/135 (51.85%), Postives = 100/135 (74.07%), Query Frame = 1
Query: 1 QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVDDQLVSP-KDGEAYARQVS 402
+V+L+G+SGVGKSNL++RF N+F+ + +ST+GVEF T+ +TV+G +K QIWDTAGQERY ++ YYR A G+LLVYDVT R++F ++ W K L+ + DP V ++ GNKSD+ L P +DG++YA Q S
Sbjct: 15 KVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLTVEGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENIDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQES 149
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Match: A0A7S2RFG9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFG9_9STRA) HSP 1 Score: 146 bits (368), Expect = 1.600e-41 Identity = 73/131 (55.73%), Postives = 99/131 (75.57%), Query Frame = 1
Query: 1 QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVDD-QLVSPKDGEAYA 390
+V+LLGN VGKSNL+AR +++ FS D +TVG+EFVTK +TVDG VK QIWDTAGQER+++MM TYYRKAKG+LL++ VT+R SFV EAWR+ + A+P ++ GNK DV + + VSP++ + A
Sbjct: 17 KVVLLGNPRVGKSNLLARLNDDSFSPDNSNTVGIEFVTKTMTVDGEAVKAQIWDTAGQERFSTMMGTYYRKAKGALLLFSVTDRESFVDAEAWRQQVTELAEPDIEVLLVGNKVDVQESRKVSPEEAQTMA 147
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Match: A0A078HTI1_BRANA ((rape) hypothetical protein n=24 Tax=Brassicales TaxID=3699 RepID=A0A078HTI1_BRANA) HSP 1 Score: 145 bits (366), Expect = 2.870e-41 Identity = 70/135 (51.85%), Postives = 100/135 (74.07%), Query Frame = 1
Query: 1 QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVDDQLVSP-KDGEAYARQVS 402
+V+L+G+SGVGKSNL++RF N+F+ + +ST+GVEF T+ +TV+G +K QIWDTAGQERY ++ YYR A G+LLVYDVT R++F ++ W K L+ + DP V ++ GNKSD+ L P +DG++YA Q S
Sbjct: 15 KVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLTVEGKVIKSQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQES 149
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Match: RAA1B_ARATH (Ras-related protein RABA1b n=4 Tax=Brassicaceae TaxID=3700 RepID=RAA1B_ARATH) HSP 1 Score: 145 bits (366), Expect = 2.870e-41 Identity = 71/135 (52.59%), Postives = 99/135 (73.33%), Query Frame = 1
Query: 1 QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDVDDQLVSP-KDGEAYARQVS 402
+V+L+G+SGVGKSNL++RF N+F+ + +ST+GVEF T+ + VDG VK QIWDTAGQERY ++ YYR A G+LLVYDVT R++F ++ W K L+ + DP V ++ GNKSD+ L P +DG++YA Q S
Sbjct: 15 KVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQES 149 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20359.6712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig20359.6712.1 >prot_Ecto-sp13_S_contig20359.6712.1 ID=prot_Ecto-sp13_S_contig20359.6712.1|Name=mRNA_Ecto-sp13_S_contig20359.6712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp QVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLback to top mRNA from alignment at Ecto-sp13_S_contig20359:709..2165- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig20359.6712.1 ID=mRNA_Ecto-sp13_S_contig20359.6712.1|Name=mRNA_Ecto-sp13_S_contig20359.6712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1457bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20359:709..2165- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20359:709..2165- >mRNA_Ecto-sp13_S_contig20359.6712.1 ID=mRNA_Ecto-sp13_S_contig20359.6712.1|Name=mRNA_Ecto-sp13_S_contig20359.6712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20359:709..2165- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |