mRNA_Ecto-sp13_S_contig20358.6711.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20358.6711.1
Unique NamemRNA_Ecto-sp13_S_contig20358.6711.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20358.6711.1 vs. uniprot
Match: D8LQ51_ECTSI (Hydroxymethylglutaryl-CoA lyase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ51_ECTSI)

HSP 1 Score: 450 bits (1157), Expect = 1.730e-154
Identity = 232/238 (97.48%), Postives = 236/238 (99.16%), Query Frame = 1 
Query:    1 VLANLGRAPGVKYAALTPNLRGLEAALEAGADEVAVFAAASEAFSAANINCSIVESLERFKPVMEKAKVAGLPVRGYVSCVLGCPYEGRVAPGAVAEVATSLLDMGCYSVSLGDTIGAGTAGSTLVLLENLREAGVPLEKMAVHFHDTYGQALANILVALEEGITVLDTSVSGLGGCPYAPGASGNVATEDVVYMLDGMGINTGVDLDMLLDTSLYISDMLGRPPQSRVARAMLAKQS 714
            VLANLGRAPGVKYAALTPNLRGLEAALEAGADEVAVFAAASEAFS+ANINCSIVESLERFKPVMEKAKVAGLPVRGYVSCVLGCPYEGRVAPGAVAEVATSLLDMGCYSVSLGDTIGAGTAGSTLVLLE LREAGVPLEK+AVHFHDTYGQALANILVALEEGITVLDTSVSGLGGCPYAPGASGNVATEDVVYMLDGMGINTGVDLD+LLDTSLYISD LGRPPQSRVARAMLAK+S
Sbjct:   98 VLANLGRAPGVKYAALTPNLRGLEAALEAGADEVAVFAAASEAFSSANINCSIVESLERFKPVMEKAKVAGLPVRGYVSCVLGCPYEGRVAPGAVAEVATSLLDMGCYSVSLGDTIGAGTAGSTLVLLETLREAGVPLEKVAVHFHDTYGQALANILVALEEGITVLDTSVSGLGGCPYAPGASGNVATEDVVYMLDGMGINTGVDLDLLLDTSLYISDKLGRPPQSRVARAMLAKRS 335
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BLAST of mRNA_Ecto-sp13_S_contig20358.6711.1 vs. uniprot
Match: UPI0016659C4E (hydroxymethylglutaryl-CoA lyase n=1 Tax=Tistrella bauzanensis TaxID=657419 RepID=UPI0016659C4E)

HSP 1 Score: 332 bits (850), Expect = 1.780e-108
Identity = 167/237 (70.46%), Postives = 195/237 (82.28%), Query Frame = 1 
Query:    1 VLANLGRAPGVKYAALTPNLRGLEAALEAGADEVAVFAAASEAFSAANINCSIVESLERFKPVMEKAKVAGLPVRGYVSCVLGCPYEGRVAPGAVAEVATSLLDMGCYSVSLGDTIGAGTAGSTLVLLENLREAGVPLEKMAVHFHDTYGQALANILVALEEGITVLDTSVSGLGGCPYAPGASGNVATEDVVYMLDGMGINTGVDLDMLLDTSLYISDMLGRPPQSRVARAMLAKQ 711
            V+A L R PG +Y  LTPN++GLEAAL AGADEVAVF AASEAFS  NINC+I ESL+RF+PV++ A+ AG  VRGYVSCVLGCPYEG +AP  VAEV+ +LLDMGCY VSLGDTIG GTAG    L+E +  A VP E++AVHFHDTYGQALANIL ALEEGI V+D+SV+GLGGCPYA GA+GNVATEDV+YML GMGINTGVDLD +L+   +ISD LGRPP  RV+RAM A++
Sbjct:   65 VMAGLTRRPGTRYPVLTPNIKGLEAALAAGADEVAVFGAASEAFSKRNINCTIAESLDRFRPVVDAARAAGAEVRGYVSCVLGCPYEGEIAPEKVAEVSKALLDMGCYEVSLGDTIGVGTAGRVHRLIETV-SAVVPRERLAVHFHDTYGQALANILAALEEGIAVVDSSVAGLGGCPYAKGATGNVATEDVLYMLHGMGINTGVDLDAVLEAGWFISDQLGRPPVGRVSRAMRARR 300
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BLAST of mRNA_Ecto-sp13_S_contig20358.6711.1 vs. uniprot
Match: UPI000E2EF336 (hydroxymethylglutaryl-CoA lyase n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI000E2EF336)

HSP 1 Score: 324 bits (831), Expect = 1.230e-105
Identity = 167/238 (70.17%), Postives = 191/238 (80.25%), Query Frame = 1 
Query:    1 VLANLGRAPGVKYAALTPNLRGLEAALEAGADEVAVFAAASEAFSAANINCSIVESLERFKPVMEKAKVAGLPVRGYVSCVLGCPYEGRVAPGAVAEVATSLLDMGCYSVSLGDTIGAGTAGSTLVLLENLREAGVPLEKMAVHFHDTYGQALANILVALEEGITVLDTSVSGLGGCPYAPGASGNVATEDVVYMLDGMGINTGVDLDMLLDTSLYISDMLGRPPQSRVARAMLAKQS 714
            V A L RAPGV+Y ALTPNL+G E AL AGADEVAVF AASE FS  NINCS+ ESL+RF PVM+ A    +PVRGYVSCVLGCPYEG +AP  V EV+ +LLDMGCY VSLGDTIG GTAGST  LLE+L  A +P E++AVHFHDTYGQALANILVAL+ GIT +D SV+GLGGCPYA GASGNVATEDVVY+LDG+GI++G+DL  L+     IS +LGR P SR ARA+LAK S
Sbjct:   65 VFAGLTRAPGVRYTALTPNLQGFERALAAGADEVAVFGAASERFSQKNINCSVAESLQRFAPVMQAAAQHNIPVRGYVSCVLGCPYEGDIAPEKVREVSAALLDMGCYQVSLGDTIGTGTAGSTATLLEHLL-ATLPAERLAVHFHDTYGQALANILVALQHGITTIDASVAGLGGCPYAKGASGNVATEDVVYLLDGLGIDSGIDLTALVAAGARISKVLGREPVSRSARALLAKGS 301
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BLAST of mRNA_Ecto-sp13_S_contig20358.6711.1 vs. uniprot
Match: A0A1Y5SIC2_9PROT (Hydroxymethylglutaryl-CoA lyase n=1 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5SIC2_9PROT)

HSP 1 Score: 323 bits (827), Expect = 5.290e-105
Identity = 161/236 (68.22%), Postives = 189/236 (80.08%), Query Frame = 1 
Query:    1 VLANLGRAPGVKYAALTPNLRGLEAALEAGADEVAVFAAASEAFSAANINCSIVESLERFKPVMEKAKVAGLPVRGYVSCVLGCPYEGRVAPGAVAEVATSLLDMGCYSVSLGDTIGAGTAGSTLVLLENLREAGVPLEKMAVHFHDTYGQALANILVALEEGITVLDTSVSGLGGCPYAPGASGNVATEDVVYMLDGMGINTGVDLDMLLDTSLYISDMLGRPPQSRVARAMLAK 708
            V+A + R PG +Y ALTPN+RG EAA EAG DEVAVFAAASE FS  NINCS+ ESLE F+PV+E AK AGLPVRGYVSCVLGCP++G V PG VA VA +L  MGCY VSLGDTIG GT      +LE +    +P+EK+ VH+HDTYGQALANIL +LE GI  +D+SV+GLGGCPYAPGA+GNVATEDVVYMLDG+GI TG+DL+ L+ T+ +ISD LGRPP SRVARAM A+
Sbjct:   65 VMAAIHRVPGARYTALTPNMRGFEAAREAGVDEVAVFAAASEGFSRKNINCSVAESLEMFRPVVEAAKAAGLPVRGYVSCVLGCPFDGDVPPGDVARVAAALYGMGCYEVSLGDTIGVGTPARARAMLEAVA-GDIPVEKIGVHYHDTYGQALANILASLEFGIATIDSSVAGLGGCPYAPGATGNVATEDVVYMLDGLGIETGIDLEALVRTAWWISDRLGRPPVSRVARAMKAR 299
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BLAST of mRNA_Ecto-sp13_S_contig20358.6711.1 vs. uniprot
Match: A0A162KV33_9PROT (Hydroxymethylglutaryl-CoA lyase n=3 Tax=Tistrella TaxID=171436 RepID=A0A162KV33_9PROT)

HSP 1 Score: 323 bits (827), Expect = 5.290e-105
Identity = 160/236 (67.80%), Postives = 189/236 (80.08%), Query Frame = 1 
Query:    1 VLANLGRAPGVKYAALTPNLRGLEAALEAGADEVAVFAAASEAFSAANINCSIVESLERFKPVMEKAKVAGLPVRGYVSCVLGCPYEGRVAPGAVAEVATSLLDMGCYSVSLGDTIGAGTAGSTLVLLENLREAGVPLEKMAVHFHDTYGQALANILVALEEGITVLDTSVSGLGGCPYAPGASGNVATEDVVYMLDGMGINTGVDLDMLLDTSLYISDMLGRPPQSRVARAMLAK 708
            V+  L R PG +Y  LTPNL+GLE+ALE GADEVAVF AASEAFS  NINC+I ESLERF+PV+E+A+ AG  VRGYVSCVLGCPYEG + P  VAEV+ +L +MGCY VSLGDTIG GTAG    L++ +  A VP +++AVHFHDTYGQALANIL ALEEGI V+D SV+GLGGCPYA GA+GNVATEDV+YML+GMGI TG+D D +L    +ISD LGRPP  RV+RA+ AK
Sbjct:   65 VMRGLTRRPGTRYPVLTPNLKGLESALEVGADEVAVFGAASEAFSKRNINCTIAESLERFRPVVERAREAGAQVRGYVSCVLGCPYEGEIDPAKVAEVSKALYEMGCYEVSLGDTIGTGTAGKVKTLIDTV-SAVVPRDRLAVHFHDTYGQALANILAALEEGIAVVDASVAGLGGCPYAKGATGNVATEDVLYMLNGMGIRTGIDFDAVLQAGWFISDQLGRPPAGRVSRALRAK 299
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BLAST of mRNA_Ecto-sp13_S_contig20358.6711.1 vs. uniprot
Match: A0A7R7J9T1_9ALTE (Hydroxymethylglutaryl-CoA lyase n=2 Tax=unclassified Alteromonas TaxID=2614992 RepID=A0A7R7J9T1_9ALTE)

HSP 1 Score: 321 bits (823), Expect = 1.860e-104
Identity = 155/236 (65.68%), Postives = 194/236 (82.20%), Query Frame = 1 
Query:    1 VLANLGRAPGVKYAALTPNLRGLEAALEAGADEVAVFAAASEAFSAANINCSIVESLERFKPVMEKAKVAGLPVRGYVSCVLGCPYEGRVAPGAVAEVATSLLDMGCYSVSLGDTIGAGTAGSTLVLLENLREAGVPLEKMAVHFHDTYGQALANILVALEEGITVLDTSVSGLGGCPYAPGASGNVATEDVVYMLDGMGINTGVDLDMLLDTSLYISDMLGRPPQSRVARAMLAK 708
            +   L R  GV+Y+ALTPN++GL+AALEAG +EVAVF AASE+FS  NINCSI ESL RF+PV+EKAK   +PVRGYVSCV+GCPYEG++AP AVA+V+ +LLDMGCY +SLGDTIG GT G+T  L++ +    +P+ K+AVHFHDTYGQAL N+  A+E G+ V+D++VSGLGGCPYA GASGNVATEDVVYML+GMGI + VD+D LLDTS ++  +LGRPP S+VA A+LAK
Sbjct:   65 IFKQLTRKQGVQYSALTPNMKGLDAALEAGVEEVAVFGAASESFSQKNINCSISESLSRFEPVIEKAKALNIPVRGYVSCVMGCPYEGKIAPKAVADVSKTLLDMGCYEISLGDTIGTGTPGATKALMDEVLN-DIPVSKIAVHFHDTYGQALVNLYTAMEYGVAVIDSAVSGLGGCPYAKGASGNVATEDVVYMLNGMGITSNVDMDKLLDTSRFVQSVLGRPPVSKVATALLAK 299
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BLAST of mRNA_Ecto-sp13_S_contig20358.6711.1 vs. uniprot
Match: A0A5C8ZW11_9GAMM (Hydroxymethylglutaryl-CoA lyase n=1 Tax=Parahaliea aestuarii TaxID=1852021 RepID=A0A5C8ZW11_9GAMM)

HSP 1 Score: 321 bits (823), Expect = 1.980e-104
Identity = 164/238 (68.91%), Postives = 191/238 (80.25%), Query Frame = 1 
Query:    1 VLANLGRAPGVKYAALTPNLRGLEAALEAGADEVAVFAAASEAFSAANINCSIVESLERFKPVMEKAKVAGLPVRGYVSCVLGCPYEGRVAPGAVAEVATSLLDMGCYSVSLGDTIGAGTAGSTLVLLENLREAGVPLEKMAVHFHDTYGQALANILVALEEGITVLDTSVSGLGGCPYAPGASGNVATEDVVYMLDGMGINTGVDLDMLLDTSLYISDMLGRPPQSRVARAMLAKQS 714
            V A L RAPGV+Y ALTPNL+G E AL AGADEVAVF AASE+FS  NINCS+ ESLERF PVM+ A    +PVRGYVSCVLGCPYEG +AP  V EV+T+LLDMGCY VSLGDTIG+G+AGST  LLE+L    +P+ ++AVHFHDTYGQALANILVAL+ GI  +D SV+GLGGCPYA GASGNVATEDVVY+LDG+GI +G+DL  L+     IS +LGR P SR ARA+L+K S
Sbjct:   65 VFAGLSRAPGVRYTALTPNLQGFERALAAGADEVAVFGAASESFSQKNINCSVAESLERFTPVMQAAARENIPVRGYVSCVLGCPYEGEIAPDKVREVSTALLDMGCYEVSLGDTIGSGSAGSTARLLEHLLST-LPVNRLAVHFHDTYGQALANILVALQHGIATIDASVAGLGGCPYAKGASGNVATEDVVYLLDGLGIESGIDLAALVAAGERISRVLGREPVSRCARALLSKGS 301
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BLAST of mRNA_Ecto-sp13_S_contig20358.6711.1 vs. uniprot
Match: A0A6A5L0Y2_LUPAL (Hydroxymethylglutaryl-CoA lyase, mitochondrial n=14 Tax=cellular organisms TaxID=131567 RepID=A0A6A5L0Y2_LUPAL)

HSP 1 Score: 317 bits (813), Expect = 5.990e-103
Identity = 159/232 (68.53%), Postives = 188/232 (81.03%), Query Frame = 1 
Query:    1 VLANLGRAPGVKYAALTPNLRGLEAALEAGADEVAVFAAASEAFSAANINCSIVESLERFKPVMEKAKVAGLPVRGYVSCVLGCPYEGRVAPGAVAEVATSLLDMGCYSVSLGDTIGAGTAGSTLVLLENLREAGVPLEKMAVHFHDTYGQALANILVALEEGITVLDTSVSGLGGCPYAPGASGNVATEDVVYMLDGMGINTGVDLDMLLDTSLYISDMLGRPPQSRVARA 696
            VLA + R PGV+YAALTPNL+GLE AL A ADEVAVF AASE+FS  NINCSI ESL+RF PVME+AK AG+PVRGYVSCVLGCPYEG +AP AVA+VA  L  MGCY +SLGDTIG GT      ++  + E  VP++K+AVHFHDTYGQALANIL AL+ G+ V+D+SV+GLGGCPYA GASGNVA+EDV+YML+G+GI TGVDLD L+    +ISD +GRP  S+VARA
Sbjct:   65 VLAGIARKPGVRYAALTPNLKGLEGALAAKADEVAVFGAASESFSQKNINCSIAESLDRFAPVMEQAKAAGVPVRGYVSCVLGCPYEGEIAPRAVADVAERLFAMGCYEISLGDTIGTGTPTKAQAMIAAVAER-VPVDKIAVHFHDTYGQALANILAALQMGVAVVDSSVAGLGGCPYAKGASGNVASEDVLYMLNGLGIETGVDLDRLIAAGAFISDAIGRPTASKVARA 295
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BLAST of mRNA_Ecto-sp13_S_contig20358.6711.1 vs. uniprot
Match: G7Z9X9_AZOL4 (Hydroxymethylglutaryl-CoA lyase n=12 Tax=Azospirillum TaxID=191 RepID=G7Z9X9_AZOL4)

HSP 1 Score: 317 bits (813), Expect = 5.990e-103
Identity = 159/232 (68.53%), Postives = 187/232 (80.60%), Query Frame = 1 
Query:    1 VLANLGRAPGVKYAALTPNLRGLEAALEAGADEVAVFAAASEAFSAANINCSIVESLERFKPVMEKAKVAGLPVRGYVSCVLGCPYEGRVAPGAVAEVATSLLDMGCYSVSLGDTIGAGTAGSTLVLLENLREAGVPLEKMAVHFHDTYGQALANILVALEEGITVLDTSVSGLGGCPYAPGASGNVATEDVVYMLDGMGINTGVDLDMLLDTSLYISDMLGRPPQSRVARA 696
            VLA + R PGV+YAALTPNL+GLE AL A ADEVAVF AASE+FS  NINCSI ESL+RF PVME+AK AG+PVRGYVSCVLGCPYEG +AP AVA+VA  L  MGCY +SLGDTIG GT      ++  + E  VP+EK+AVHFHDTYGQALANIL AL+ G+ V+D+SV+GLGGCPYA GASGNVA+EDV+YML+G+GI TGVDLD L+    +I D +GRP  S+VARA
Sbjct:   65 VLAGIARKPGVRYAALTPNLKGLEGALAAKADEVAVFGAASESFSRKNINCSIAESLDRFSPVMEQAKAAGVPVRGYVSCVLGCPYEGEIAPRAVADVAERLFAMGCYEISLGDTIGTGTPTKAQAMIAAVAER-VPVEKIAVHFHDTYGQALANILAALQMGVAVVDSSVAGLGGCPYAKGASGNVASEDVLYMLNGLGIETGVDLDKLIAAGAFIGDAIGRPTASKVARA 295
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BLAST of mRNA_Ecto-sp13_S_contig20358.6711.1 vs. uniprot
Match: UPI0004212E15 (hydroxymethylglutaryl-CoA lyase n=1 Tax=Azospirillum halopraeferens TaxID=34010 RepID=UPI0004212E15)

HSP 1 Score: 317 bits (813), Expect = 5.990e-103
Identity = 158/232 (68.10%), Postives = 186/232 (80.17%), Query Frame = 1 
Query:    1 VLANLGRAPGVKYAALTPNLRGLEAALEAGADEVAVFAAASEAFSAANINCSIVESLERFKPVMEKAKVAGLPVRGYVSCVLGCPYEGRVAPGAVAEVATSLLDMGCYSVSLGDTIGAGTAGSTLVLLENLREAGVPLEKMAVHFHDTYGQALANILVALEEGITVLDTSVSGLGGCPYAPGASGNVATEDVVYMLDGMGINTGVDLDMLLDTSLYISDMLGRPPQSRVARA 696
            V+  + R PG +YA LTPNL+GLE ALEA ADEVAVF AASE+FS  NINCSI ESLERF PVME+A+ AG+PVRGYVSCVLGCPYEG +AP AVA VA  L++MGCY VSLGDTIG GT G    ++  + E  VP EK+AVHFHDTYGQALANIL ALE G+ V+D+SV+GLGGCPYA GASGNVA+EDV+YML+G+G+ TGVDLD L+    +I + LGRP  S+VARA
Sbjct:   65 VMQAIARRPGTRYAVLTPNLKGLEGALEARADEVAVFGAASESFSRKNINCSIAESLERFAPVMERARAAGVPVRGYVSCVLGCPYEGEIAPAAVAGVAARLMEMGCYEVSLGDTIGTGTPGKAQAMIAAVAER-VPPEKLAVHFHDTYGQALANILAALEMGVAVVDSSVAGLGGCPYAKGASGNVASEDVLYMLNGLGVETGVDLDALIAAGAFIGEALGRPTASKVARA 295
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20358.6711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ51_ECTSI1.730e-15497.48Hydroxymethylglutaryl-CoA lyase n=2 Tax=Ectocarpus... [more]
UPI0016659C4E1.780e-10870.46hydroxymethylglutaryl-CoA lyase n=1 Tax=Tistrella ... [more]
UPI000E2EF3361.230e-10570.17hydroxymethylglutaryl-CoA lyase n=1 Tax=Parahaliea... [more]
A0A1Y5SIC2_9PROT5.290e-10568.22Hydroxymethylglutaryl-CoA lyase n=1 Tax=Oceanibact... [more]
A0A162KV33_9PROT5.290e-10567.80Hydroxymethylglutaryl-CoA lyase n=3 Tax=Tistrella ... [more]
A0A7R7J9T1_9ALTE1.860e-10465.68Hydroxymethylglutaryl-CoA lyase n=2 Tax=unclassifi... [more]
A0A5C8ZW11_9GAMM1.980e-10468.91Hydroxymethylglutaryl-CoA lyase n=1 Tax=Parahaliea... [more]
A0A6A5L0Y2_LUPAL5.990e-10368.53Hydroxymethylglutaryl-CoA lyase, mitochondrial n=1... [more]
G7Z9X9_AZOL45.990e-10368.53Hydroxymethylglutaryl-CoA lyase n=12 Tax=Azospiril... [more]
UPI0004212E155.990e-10368.10hydroxymethylglutaryl-CoA lyase n=1 Tax=Azospirill... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20358contigEcto-sp13_S_contig20358:2..2781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score340.5
Seed ortholog evalue4.7e-91
Seed eggNOG ortholog2880.D8LQ51
Model size1345
KEGG rclassRC00502,RC00503,RC01118,RC01946
KEGG koko:K01640
KEGG ReactionR01360,R08090
KEGG Pathwayko00072,ko00280,ko00281,ko00650,ko01100,ko04146,map00072,map00280,map00281,map00650,map01100,map04146
KEGG ModuleM00036,M00088
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.hydroxymethylglutaryl-CoA lyase activity
EggNOG OGsCOG0119@1,KOG2368@2759
Ec32 ortholog descriptionHydroxymethylglutaryl-CoA lyase
Ec32 orthologEc-26_006120.1
EC4.1.3.4
Cds size528
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20358.6711.1prot_Ecto-sp13_S_contig20358.6711.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20358 805..2153 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463021.6418533-UTR-Ecto-sp13_S_contig20358:1..1001681463021.6418533-UTR-Ecto-sp13_S_contig20358:1..100Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20358 2..100 +
1681463021.6560287-UTR-Ecto-sp13_S_contig20358:714..8041681463021.6560287-UTR-Ecto-sp13_S_contig20358:714..804Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20358 715..804 +
1681463021.6991389-UTR-Ecto-sp13_S_contig20358:2153..27811681463021.6991389-UTR-Ecto-sp13_S_contig20358:2153..2781Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20358 2154..2781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463021.6665175-CDS-Ecto-sp13_S_contig20358:804..9061681463021.6665175-CDS-Ecto-sp13_S_contig20358:804..906Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20358 805..906 +
1681463021.6766074-CDS-Ecto-sp13_S_contig20358:1120..13151681463021.6766074-CDS-Ecto-sp13_S_contig20358:1120..1315Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20358 1121..1315 +
1681463021.688829-CDS-Ecto-sp13_S_contig20358:1922..21531681463021.688829-CDS-Ecto-sp13_S_contig20358:1922..2153Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20358 1923..2153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20358.6711.1

>prot_Ecto-sp13_S_contig20358.6711.1 ID=prot_Ecto-sp13_S_contig20358.6711.1|Name=mRNA_Ecto-sp13_S_contig20358.6711.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=176bp
MEKAKVAGLPVRGYVSCVLGCPYEGRVAPGAVAEVATSLLDMGCYSVSLG
DTIGAGTAGSTLVLLENLREAGVPLEKMAVHFHDTYGQALANILVALEEG
ITVLDTSVSGLGGCPYAPGASGNVATEDVVYMLDGMGINTGVDLDMLLDT
SLYISDMLGRPPQSRVARAMLAKQS*
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mRNA from alignment at Ecto-sp13_S_contig20358:2..2781+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20358.6711.1 ID=mRNA_Ecto-sp13_S_contig20358.6711.1|Name=mRNA_Ecto-sp13_S_contig20358.6711.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20358:2..2781+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCTGGCCAATCTTGGAAGAGCGCCGGGCGTCAAATATGCGGCCCTGAC
GCCCAACCTACGGGGGCTTGAGGCAGCGCTCGAGGCTGGTGCTGATGAGG
TGCAGTTGGTGGGGGCCTATGTTCTCTCTTTCGAACCGTTGGTTCAACCT
GGCGGAACAAGCCATAATTATACGGCTGCTTGCTCCAGCCTCCTTGTCAA
TAACGGCAGCTTTGTGGCAAGTGCTTCTTCGCGGAACACAGCAACAACGG
CAGCTTAGTAGCAAGTGCTTCTTCGCGGAACACAGCAGTTTCCATCACAA
GTTTAAAAGACACATATGAAGCATCCACGATCGGTACCATGTCTAGATGA
CGTGCACCACAAGACGGAGGGGCTGAAAAGGAGACAAACTGATAGGCTGT
GACGGTAGCGCTGATACAGCCTACTTCACATGGTGGACCCTCCAAGGTAT
TGTCTACAGCGGTTGTTGCTCTCGAACTGTGTTGGCGCCCCTCCCAAATC
AAGCACTCAGCAAATCCACCACCACCTCTTCACAGAAATCGACTCAAACC
AGCATTCTATCAGGCGCAATCGAAGATTTCGATAAACAGGCCAAACCTCC
GGTCTCGCTCTCTCTCGATAGTCCTACCTTGACTCGCGGCTGCCCTATGT
ATTCGAAAACGGTTTGTTTATTCCTGGATATTTATTGCACCCGTATTGCT
GTTCGTGAGACAGGTTGCGGTTTTTGCTGCGGCGTCAGAGGCATTCAGTG
CTGCCAACATCAACTGCTCAATTGTTGAGAGCTTAGAACGCTTCAAGCCA
GTCATGGAAAAGGCCAAGGTAGCGGGGTTGCCAGTACGGGGCTACGTGTC
GTGCGTACTCGGGTGCCCGTACGAGGGGCGCGTGGCTCCAGGAGCGGTTG
CGGAGGTAAGTAGATTCGCTCACCTGATGTGCCGATTCCCTGGTACACGA
GAGTTGAATGGCAAAGTAATCGTTGATTGTACGAGGTAGGTTTGTTCACC
AAAGCAGTCGTCTACTGGAGCGAGATATTTATTATAGTGGCAGCACGATC
GAATCGTGTCCACGTGGTTACCCGTCGCAGCGGCCGCTGATCTGGCGGTC
TCACGATTCCGCGGAATAGGTGGCGACTTCCCTGTTGGATATGGGATGTT
ACTCGGTGTCACTGGGAGACACCATCGGCGCGGGCACAGCTGGCAGTACC
CTCGTCCTCCTGGAAAACTTGAGAGAAGCGGGAGTGCCGCTGGAGAAGAT
GGCAGTGCACTTCCACGACACATACGGGCAGGCCTTGGCTAACATCCTCG
TTGCGCTGGAGGAGGTGAGGGGTAACATGGATGCGATTAATCCATGTCCA
CAACGCTGCTCTTGATGCCGGTCGCCGCGCGTGTGACTGCCGCATAGTGG
GTCCGAAACGGTGTTCGGAAATTCATATCGTTTTTTTGTGAGGGATCGGT
GGTGTTGCCATGCTGACGATCTAACAAGTTCAGTATCTTCCGATAACACA
CACCCTACACGATACCACACCCGGCGTGGCAGTATGTTTACGGTGCAACC
TAAGCCCAAAACATCGAACCACTCTCAGATCAAGTAAGTAGGGCGACAAG
AGTAAGATTCCAACCCCGAACACAACATACTAGTACACCCGGTTGTAATG
TTTCCAGGCGCCAGAATATGACCACCGTGGTACCGTTGTGTCGTGTGCGG
TATTTCGGAGCAACATTCTGACATCTCCTTTCGAAGAATTTTTTTTCAGA
GAAAACGACGCAATCAAATTGTATTGGTACCTGGGAAATCTGATTACCTT
GCAGGGTCCTAATTGCCGTTTGCCAAGGATAGTGCTGCTTTGAACCCCCG
ATTTCCCTCCAACACTCGCCGACTGCAAGCCCCAAATCCCTCGCTGCTAT
CCATACTTTGTTTTGCTCCAGGGTATTACCGTGTTGGACACGTCGGTTTC
TGGGCTAGGGGGTTGCCCATACGCTCCCGGGGCAAGCGGCAACGTCGCAA
CAGAGGACGTGGTGTACATGTTGGATGGGATGGGAATCAACACGGGCGTT
GACCTAGATATGTTGTTAGACACTTCTCTGTACATTTCAGACATGCTGGG
TAGGCCGCCCCAGTCCAGGGTAGCGAGGGCGATGTTGGCCAAGCAAAGTT
GACTTGTGGCAACGAGTGACCCCTCAATAGCACACATTCGAAGGAGTGAC
TACGTTGATACCTCTTTTGTGTTCGGCTGCCATTTTGGCGTCTCTTGTGA
GTTGAACCGATTCATACGCGCCCCGGAATCGTGTATGTAGTGTTGAGGAA
GCATACGCGCGCCTTCATGTTCCTTCCCTTAACGAGGGTCCTTCAGGAAT
TGTTCGCTGCGCGTCAAGTTAGGAATATTCTAGTTTTGAGTCTAGCGCAC
ATGGTGTGTTCTACATGACAAACGAACGAGATGTGCGCGTTGTGATGTCG
CTGCATGTGCTTATTGCCGAGGGGCATGCTAGGATTCGGTTTCTAGGAGC
TATCACTGATGATGGCGCTGACGTTCGACAGATTCCTTGACGCAGCAGCG
AATTCAGTTCAGTGACAACATAGATAGGGACGCAAGCATCGGATGTGTCG
TCAAGACCATGCCATCGAATTCAACATAACTTCCAAACGAAAGCGTGCGT
CACCCGTCATGCATGTGGCGATCAAGTCTAAAAACGCCCAAATGTGCGTT
AATGTGCGTTTCCCGTCACGTCTTGACCCCCACACTTCCGCCTAGAGTAC
GAAGGCACAAAACCCATATTATGGGACGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20358:2..2781+

>mRNA_Ecto-sp13_S_contig20358.6711.1 ID=mRNA_Ecto-sp13_S_contig20358.6711.1|Name=mRNA_Ecto-sp13_S_contig20358.6711.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20358:2..2781+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAAAGGCCAAGGTAGCGGGGTTGCCAGTACGGGGCTACGTGTCGTG
CGTACTCGGGTGCCCGTACGAGGGGCGCGTGGCTCCAGGAGCGGTTGCGG
AGGTGGCGACTTCCCTGTTGGATATGGGATGTTACTCGGTGTCACTGGGA
GACACCATCGGCGCGGGCACAGCTGGCAGTACCCTCGTCCTCCTGGAAAA
CTTGAGAGAAGCGGGAGTGCCGCTGGAGAAGATGGCAGTGCACTTCCACG
ACACATACGGGCAGGCCTTGGCTAACATCCTCGTTGCGCTGGAGGAGGGT
ATTACCGTGTTGGACACGTCGGTTTCTGGGCTAGGGGGTTGCCCATACGC
TCCCGGGGCAAGCGGCAACGTCGCAACAGAGGACGTGGTGTACATGTTGG
ATGGGATGGGAATCAACACGGGCGTTGACCTAGATATGTTGTTAGACACT
TCTCTGTACATTTCAGACATGCTGGGTAGGCCGCCCCAGTCCAGGGTAGC
GAGGGCGATGTTGGCCAAGCAAAGTTGA
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