mRNA_Ecto-sp13_S_contig20354.6710.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20354.6710.1
Unique NamemRNA_Ecto-sp13_S_contig20354.6710.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20354.6710.1 vs. uniprot
Match: D7FSZ0_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSZ0_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 4.590e-34
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 1
Query:    1 SSIDTSMSGTTLVSVCVRGTKLILTNVGDSRATLGRRRLRSEGGSANDGGGPLVAQALTEDHKPDIPAE 207
            SSIDTSMSGTTLVSVCVRGTKLILTNVGDSRATLGRRRLR EGGSANDGGG LVAQALTEDHKPDIPAE
Sbjct:   95 SSIDTSMSGTTLVSVCVRGTKLILTNVGDSRATLGRRRLRGEGGSANDGGGSLVAQALTEDHKPDIPAE 163          
BLAST of mRNA_Ecto-sp13_S_contig20354.6710.1 vs. uniprot
Match: A0A7S3F1S8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F1S8_9EUKA)

HSP 1 Score: 50.8 bits (120), Expect = 1.160e-5
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    1 SSIDTSMSGTTLVSVCVRGTKLILTNVGDSRATLGRRRLRSEGGSANDGGGPLVAQALTEDHKPDIPAE 207
            S ID S+SG+T  +   RG +L++ NVGDSRA LGR          +   G L+A+ L+EDHKPD   E
Sbjct:  126 SGIDVSLSGSTACTALKRGRRLLVANVGDSRAVLGR---------LDPATGRLLARDLSEDHKPDCAKE 185          
BLAST of mRNA_Ecto-sp13_S_contig20354.6710.1 vs. uniprot
Match: A0A813G8I3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G8I3_POLGL)

HSP 1 Score: 50.4 bits (119), Expect = 1.630e-5
Identity = 31/62 (50.00%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   10 DTSMSGTTLVSVCVRGTKLILTNVGDSRATLGRRRLRSEGGSANDGGGPLVAQALTEDHKPD 195
            D ++SGTT     +    L + +VGDSRA L RR   S+GG    GGG LVA+ LT DHKPD
Sbjct:  181 DCTLSGTTATLALLHDKLLYVAHVGDSRAVLARRTPSSQGGL---GGGALVAEDLTIDHKPD 239          
BLAST of mRNA_Ecto-sp13_S_contig20354.6710.1 vs. uniprot
Match: A0A1R2AXU6_9CILI (PPM-type phosphatase domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AXU6_9CILI)

HSP 1 Score: 50.4 bits (119), Expect = 1.640e-5
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   10 DTSMSGTTLVSVCVRGTKLILTNVGDSRATLGRRRLRSEGGSANDGGGPLVAQALTEDHKPDIPAE 207
            D+S+SGTT ++V +RG + I +NVGDSRA +GR           DG     A AL++DHKP++P E
Sbjct:  227 DSSLSGTTAITVLIRGKQCICSNVGDSRAVIGRYD--------KDG---WKAIALSQDHKPNVPVE 281          
BLAST of mRNA_Ecto-sp13_S_contig20354.6710.1 vs. uniprot
Match: A0A7S2RKW3_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RKW3_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.660e-5
Identity = 32/72 (44.44%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    7 IDTSMSGTTLVSVCVRGTKLILTNVGDSRATLG-----RRRLRSEGGSANDGGGPLVAQALTEDHKPDIPAE 207
            IDT++SGTT V   +RGTKL + NVGDSR   G     + +LR            +VA  L+EDHKPD+  E
Sbjct:  400 IDTTLSGTTAVVTILRGTKLFVANVGDSRIAKGVIKQIKNQLRPR----------IVAHDLSEDHKPDLEKE 461          
BLAST of mRNA_Ecto-sp13_S_contig20354.6710.1 vs. uniprot
Match: A0A5A8DHT3_CAFRO (PPM-type phosphatase domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DHT3_CAFRO)

HSP 1 Score: 50.1 bits (118), Expect = 2.210e-5
Identity = 32/69 (46.38%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    1 SSIDTSMSGTTLVSVCVRGTKLILTNVGDSRATLGRRRLRSEGGSANDGGGPLVAQALTEDHKPDIPAE 207
            S ID  +SGTT ++  +RG KL + NVGDSRA LGR+         +DG   + A  L+ DHKPD P E
Sbjct:  161 SDIDVYVSGTTGITTLIRGPKLYVANVGDSRAVLGRQ--------FHDGS--IAAVDLSRDHKPDDPEE 219          
BLAST of mRNA_Ecto-sp13_S_contig20354.6710.1 vs. uniprot
Match: W9S2V3_9ROSA (PPM-type phosphatase domain-containing protein n=1 Tax=Morus notabilis TaxID=981085 RepID=W9S2V3_9ROSA)

HSP 1 Score: 49.7 bits (117), Expect = 3.050e-5
Identity = 30/69 (43.48%), Postives = 40/69 (57.97%), Query Frame = 1
Query:    1 SSIDTSMSGTTLVSVCVRGTKLILTNVGDSRATLGRRRLRSEGGSANDGGGPLVAQALTEDHKPDIPAE 207
            S IDT  SGTT +++  +G +L++ NVGDSRA L          +    GG L+A  LT D KPD+P E
Sbjct:  166 SEIDTFRSGTTALTIVKQGERLVVANVGDSRAVL----------ATTSDGGTLLALQLTIDFKPDLPQE 224          
BLAST of mRNA_Ecto-sp13_S_contig20354.6710.1 vs. uniprot
Match: A0A7S2UGJ7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UGJ7_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 3.060e-5
Identity = 28/67 (41.79%), Postives = 37/67 (55.22%), Query Frame = 1
Query:    7 IDTSMSGTTLVSVCVRGTKLILTNVGDSRATLGRRRLRSEGGSANDGGGPLVAQALTEDHKPDIPAE 207
            IDT  SGTTL    +RG  +   N+GDSR  +G+           +  G +VA+ LT+DHKPD P E
Sbjct:  198 IDTEFSGTTLSMAIIRGNTITGVNIGDSRVIIGK-----------EVDGKMVAEELTQDHKPDTPKE 253          
BLAST of mRNA_Ecto-sp13_S_contig20354.6710.1 vs. uniprot
Match: F0XW26_AURAN (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XW26_AURAN)

HSP 1 Score: 49.3 bits (116), Expect = 3.090e-5
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 1
Query:    7 IDTSMSGTTLVSVCVRGTKLILTNVGDSRATLGRRRLRSEGGSANDGGGPLVAQALTEDHKPDIPAE 207
            +DT  SG+T V   +RG  L+++NVGDSR TLG            +  G +VA+ ++ DHKPD PAE
Sbjct:   58 VDTEFSGSTYVFAALRGGALLVSNVGDSRVTLGV-----------EVDGAIVARPVSIDHKPDAPAE 113          
BLAST of mRNA_Ecto-sp13_S_contig20354.6710.1 vs. uniprot
Match: A0A1R2BZE2_9CILI (PPM-type phosphatase domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BZE2_9CILI)

HSP 1 Score: 49.3 bits (116), Expect = 4.200e-5
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 1
Query:   10 DTSMSGTTLVSVCVRGTKLILTNVGDSRATLGRRRLRSEGGSANDGGGPLVAQALTEDHKP 192
            DT+ SG+T VS+ +RG KL   NVGDSRA LGR+     G   N      +A AL+ DHKP
Sbjct:  216 DTNFSGSTFVSIIIRGKKLWCANVGDSRALLGRQLTDKTGTKGNCN--HWMAIALSRDHKP 274          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20354.6710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FSZ0_ECTSI4.590e-3497.10PPM-type phosphatase domain-containing protein n=1... [more]
A0A7S3F1S8_9EUKA1.160e-544.93Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A813G8I3_POLGL1.630e-550.00Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A1R2AXU6_9CILI1.640e-545.45PPM-type phosphatase domain-containing protein n=1... [more]
A0A7S2RKW3_9STRA1.660e-544.44Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A5A8DHT3_CAFRO2.210e-546.38PPM-type phosphatase domain-containing protein n=1... [more]
W9S2V3_9ROSA3.050e-543.48PPM-type phosphatase domain-containing protein n=1... [more]
A0A7S2UGJ7_9STRA3.060e-541.79Hypothetical protein n=1 Tax=Attheya septentrional... [more]
F0XW26_AURAN3.090e-543.28PPM-type phosphatase domain-containing protein (Fr... [more]
A0A1R2BZE2_9CILI4.200e-549.18PPM-type phosphatase domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20354contigEcto-sp13_S_contig20354:2435..2641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score119.4
Seed ortholog evalue6.1e-25
Seed eggNOG ortholog2880.D7FSZ0
Model size207
KEGG koko:K04403,ko:K14803
KEGG Pathwayko04010,ko04064,ko04380,ko04620,ko04621,ko04668,ko05140,ko05145,ko05168,ko05169,map04010,map04064,map04380,map04620,map04621,map04668,map05140,map05145,map05168,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
Cds size189
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463021.5945704-UTR-Ecto-sp13_S_contig20354:2434..24521681463021.5945704-UTR-Ecto-sp13_S_contig20354:2434..2452Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20354 2435..2452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463021.6082723-CDS-Ecto-sp13_S_contig20354:2452..26411681463021.6082723-CDS-Ecto-sp13_S_contig20354:2452..2641Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20354 2453..2641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20354.6710.1prot_Ecto-sp13_S_contig20354.6710.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20354 2453..2641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20354.6710.1

>prot_Ecto-sp13_S_contig20354.6710.1 ID=prot_Ecto-sp13_S_contig20354.6710.1|Name=mRNA_Ecto-sp13_S_contig20354.6710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
MSGTTLVSVCVRGTKLILTNVGDSRATLGRRRLRSEGGSANDGGGPLVAQ
ALTEDHKPDIPAE
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mRNA from alignment at Ecto-sp13_S_contig20354:2435..2641+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20354.6710.1 ID=mRNA_Ecto-sp13_S_contig20354.6710.1|Name=mRNA_Ecto-sp13_S_contig20354.6710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20354:2435..2641+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCTCGATCGACACGTCAATGAGCGGCACAACCCTTGTGTCGGTCTGCGT GCGTGGCACCAAGCTCATACTCACCAACGTTGGCGACTCCCGCGCGACCC TCGGCAGGCGGCGCTTGCGCAGCGAGGGGGGCTCCGCGAACGACGGGGGA GGGCCACTCGTTGCCCAGGCACTAACCGAGGACCACAAGCCGGACATTCC TGCAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20354:2435..2641+

>mRNA_Ecto-sp13_S_contig20354.6710.1 ID=mRNA_Ecto-sp13_S_contig20354.6710.1|Name=mRNA_Ecto-sp13_S_contig20354.6710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20354:2435..2641+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGGCACAACCCTTGTGTCGGTCTGCGTGCGTGGCACCAAGCTCAT
ACTCACCAACGTTGGCGACTCCCGCGCGACCCTCGGCAGGCGGCGCTTGC
GCAGCGAGGGGGGCTCCGCGAACGACGGGGGAGGGCCACTCGTTGCCCAG
GCACTAACCGAGGACCACAAGCCGGACATTCCTGCAGAG
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