mRNA_Ecto-sp13_S_contig20351.6709.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20351.6709.1
Unique NamemRNA_Ecto-sp13_S_contig20351.6709.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20351.6709.1 vs. uniprot
Match: D7G614_ECTSI (Proteasome subunit alpha type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G614_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.520e-34
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 3 
Query:    3 QLFFSDPSGMFVRYKCKAIGSGSEGAQSTLQEGYSDSLTLAEAEALAVSTLKQVMEEKINPDNVE 197
            QLFFSDPSGMFVRYKCKAIGSGSEGAQSTLQEGYSDSLTLAEAEALAVSTLKQVMEEKINPDNVE
Sbjct:  151 QLFFSDPSGMFVRYKCKAIGSGSEGAQSTLQEGYSDSLTLAEAEALAVSTLKQVMEEKINPDNVE 215
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BLAST of mRNA_Ecto-sp13_S_contig20351.6709.1 vs. uniprot
Match: A0A7S0C1Z3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C1Z3_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.320e-25
Identity = 51/65 (78.46%), Postives = 57/65 (87.69%), Query Frame = 3 
Query:    3 QLFFSDPSGMFVRYKCKAIGSGSEGAQSTLQEGYSDSLTLAEAEALAVSTLKQVMEEKINPDNVE 197
            QLFFSDPSG FVRYK KAIG+GSEGAQS L E YS+++TL EAE LA+STLKQVMEEKI+ DNVE
Sbjct:   21 QLFFSDPSGTFVRYKAKAIGAGSEGAQSNLSESYSETMTLEEAEELALSTLKQVMEEKISTDNVE 85
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BLAST of mRNA_Ecto-sp13_S_contig20351.6709.1 vs. uniprot
Match: A0A835Z048_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z048_9STRA)

HSP 1 Score: 101 bits (251), Expect = 6.040e-25
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 3 
Query:    3 QLFFSDPSGMFVRYKCKAIGSGSEGAQSTLQEGYSDSLTLAEAEALAVSTLKQVMEEKINPDNVE 197
            QLFFSDPSGMF RYK KAIGSGSEGAQ+ LQE +S++ TL EAEALAV TLKQVMEEKI+ DNVE
Sbjct:  151 QLFFSDPSGMFTRYKAKAIGSGSEGAQTNLQESFSENFTLLEAEALAVQTLKQVMEEKISKDNVE 215
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BLAST of mRNA_Ecto-sp13_S_contig20351.6709.1 vs. uniprot
Match: A0A1E7FH86_9STRA (Proteasome subunit alpha type n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FH86_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.760e-24
Identity = 50/65 (76.92%), Postives = 58/65 (89.23%), Query Frame = 3 
Query:    3 QLFFSDPSGMFVRYKCKAIGSGSEGAQSTLQEGYSDSLTLAEAEALAVSTLKQVMEEKINPDNVE 197
            QL+FSDPSG FVRYK KAIG+GSEGAQS L+E YSDS+TL EAE LA+STLKQVMEEKI+ +N+E
Sbjct:  155 QLYFSDPSGTFVRYKAKAIGAGSEGAQSNLEESYSDSMTLKEAEELALSTLKQVMEEKISTENIE 219
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BLAST of mRNA_Ecto-sp13_S_contig20351.6709.1 vs. uniprot
Match: A0A7S2YJP1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YJP1_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.780e-24
Identity = 49/65 (75.38%), Postives = 58/65 (89.23%), Query Frame = 3 
Query:    3 QLFFSDPSGMFVRYKCKAIGSGSEGAQSTLQEGYSDSLTLAEAEALAVSTLKQVMEEKINPDNVE 197
            QLFFSDPSG FVRYK KAIG+GSEGAQS L+E YS+++T+ EAE LA+STLKQVMEEKI+ DN+E
Sbjct:   91 QLFFSDPSGTFVRYKAKAIGAGSEGAQSNLEESYSETMTVLEAEDLALSTLKQVMEEKISTDNIE 155
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BLAST of mRNA_Ecto-sp13_S_contig20351.6709.1 vs. uniprot
Match: A0A7S1CXZ6_CYCTE (Proteasome subunit alpha type n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXZ6_CYCTE)

HSP 1 Score: 99.4 bits (246), Expect = 3.880e-24
Identity = 50/65 (76.92%), Postives = 58/65 (89.23%), Query Frame = 3 
Query:    3 QLFFSDPSGMFVRYKCKAIGSGSEGAQSTLQEGYSDSLTLAEAEALAVSTLKQVMEEKINPDNVE 197
            QLFFSDPSG FVRYK KAIG+GSEGAQS L+E YS+SL++ EAE LA+STLKQVMEEKI+ DN+E
Sbjct:  155 QLFFSDPSGTFVRYKAKAIGAGSEGAQSNLEESYSESLSMTEAEDLALSTLKQVMEEKISADNIE 219
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BLAST of mRNA_Ecto-sp13_S_contig20351.6709.1 vs. uniprot
Match: A0A7S3LEV1_9STRA (Proteasome subunit alpha type (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LEV1_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.110e-23
Identity = 49/65 (75.38%), Postives = 58/65 (89.23%), Query Frame = 3 
Query:    3 QLFFSDPSGMFVRYKCKAIGSGSEGAQSTLQEGYSDSLTLAEAEALAVSTLKQVMEEKINPDNVE 197
            QLFFSDPSG FVR+K KAIG+GSEGAQS L+E YS+S+TL EAE LA+STLKQVMEEKI+ +N+E
Sbjct:  166 QLFFSDPSGTFVRFKAKAIGAGSEGAQSNLEEAYSESMTLQEAENLALSTLKQVMEEKISTENIE 230
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BLAST of mRNA_Ecto-sp13_S_contig20351.6709.1 vs. uniprot
Match: A0A7S1BBX2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBX2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.860e-23
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 3 
Query:    3 QLFFSDPSGMFVRYKCKAIGSGSEGAQSTLQEGYSDSLTLAEAEALAVSTLKQVMEEKINPDNVE 197
            QL+FSDPSG FVRYK KAIG+GSEGAQS+L + YSD++TL EAE LA+STLKQVMEEKI   NVE
Sbjct:   70 QLYFSDPSGTFVRYKAKAIGAGSEGAQSSLGDSYSDTMTLEEAEELALSTLKQVMEEKITTTNVE 134
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BLAST of mRNA_Ecto-sp13_S_contig20351.6709.1 vs. uniprot
Match: A0A6V1KK02_HETAK (Proteasome subunit alpha type n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KK02_HETAK)

HSP 1 Score: 96.3 bits (238), Expect = 5.340e-23
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 3 
Query:    3 QLFFSDPSGMFVRYKCKAIGSGSEGAQSTLQEGYSDSLTLAEAEALAVSTLKQVMEEKINPDNVE 197
            QLFFS+PSG FV YK KAIG+GSEGAQSTL+E YS+S T+ EAE LAV+ LKQVMEEKIN +NVE
Sbjct:  151 QLFFSEPSGTFVEYKAKAIGAGSEGAQSTLEESYSESFTMEEAENLAVTVLKQVMEEKINSENVE 215
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BLAST of mRNA_Ecto-sp13_S_contig20351.6709.1 vs. uniprot
Match: K0SP18_THAOC (PROTEASOME_ALPHA_1 domain-containing protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=K0SP18_THAOC)

HSP 1 Score: 96.7 bits (239), Expect = 1.620e-22
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = 3 
Query:    3 QLFFSDPSGMFVRYKCKAIGSGSEGAQSTLQEGYSDSLTLAEAEALAVSTLKQVMEEKINPDNVE 197
            QLFFSDPSG FV+YK KAIG+GSEGAQSTL E Y++ +TL EAE LA+STLKQVMEEKI+ +NVE
Sbjct:  237 QLFFSDPSGTFVQYKAKAIGAGSEGAQSTLSESYNEDMTLEEAEELALSTLKQVMEEKISTENVE 301
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20351.6709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G614_ECTSI1.520e-34100.00Proteasome subunit alpha type n=1 Tax=Ectocarpus s... [more]
A0A7S0C1Z3_9STRA1.320e-2578.46Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A835Z048_9STRA6.040e-2580.00Proteasome subunit alpha type n=1 Tax=Tribonema mi... [more]
A0A1E7FH86_9STRA2.760e-2476.92Proteasome subunit alpha type n=1 Tax=Fragilariops... [more]
A0A7S2YJP1_9STRA2.780e-2475.38Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S1CXZ6_CYCTE3.880e-2476.92Proteasome subunit alpha type n=1 Tax=Cyclophora t... [more]
A0A7S3LEV1_9STRA2.110e-2375.38Proteasome subunit alpha type (Fragment) n=1 Tax=A... [more]
A0A7S1BBX2_9STRA2.860e-2375.38Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A6V1KK02_HETAK5.340e-2375.38Proteasome subunit alpha type n=1 Tax=Heterosigma ... [more]
K0SP18_THAOC1.620e-2275.38PROTEASOME_ALPHA_1 domain-containing protein n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20351contigEcto-sp13_S_contig20351:461..1243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size198
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463021.5435684-CDS-Ecto-sp13_S_contig20351:460..6211681463021.5435684-CDS-Ecto-sp13_S_contig20351:460..621Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20351 461..621 +
1681463021.5548072-CDS-Ecto-sp13_S_contig20351:1207..12111681463021.5548072-CDS-Ecto-sp13_S_contig20351:1207..1211Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20351 1208..1211 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463021.564642-UTR-Ecto-sp13_S_contig20351:1211..12431681463021.564642-UTR-Ecto-sp13_S_contig20351:1211..1243Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20351 1212..1243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20351.6709.1prot_Ecto-sp13_S_contig20351.6709.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20351 461..1211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20351.6709.1

>prot_Ecto-sp13_S_contig20351.6709.1 ID=prot_Ecto-sp13_S_contig20351.6709.1|Name=mRNA_Ecto-sp13_S_contig20351.6709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
PSCSSATLRACSCGTSARPSVRGARGRRAPSRRATATLSRSPRRRRWPYP
RSSR*
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mRNA from alignment at Ecto-sp13_S_contig20351:461..1243+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20351.6709.1 ID=mRNA_Ecto-sp13_S_contig20351.6709.1|Name=mRNA_Ecto-sp13_S_contig20351.6709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=783bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20351:461..1243+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCAGCTGTTCTTCAGCGACCCTTCGGGCATGTTCGTGCGGTACAAGTGC
AAGGCCATCGGTTCGGGGAGCGAGGGGGCGCAGAGCACCCTCCAGGAGGG
CTACAGCGACTCTCTCACGCTCGCCGAGGCGGAGGCGTTGGCCGTATCCA
CGCTCAAGCAGGTGAAGAAATGCAGTGGATAGGACGGGGGCGCCCCTGGT
AAATCTTGGCGCCTTGTGTATTCCTAAGTTATTTTCGAGTGGCGCATTCA
TCAGCAGCCAAGAAAGAGGAACGTCGGCGGTTCTTTTCACCATCGCGACG
TCTTGCTATGCATACGCAATCCTTTTGCCTCGCCAAGTGCGTCTCATTAC
TTATCGTTTTTCTTCGTGAGGGTGTGTGGCGCTTGAAGAGTAACTTGAGT
TGGTCAAGCCACTTCGTTCAAATGACAGCCCGAGTGCAGCAAGCTGGAAT
AGACTTGAGTGGAGAGTACCGGTGGACTCGTGATTCTGCAGTAAAGTACG
ACTACTTCGCAGGGGCGCGTGGATCGACTGCACTACGTACGCGTCCCTTC
ACGTCTGTATTGGTTTGCCACCTTTTCTGCTTTACGCCAACACCGCGCCG
CTCACTCCCCGCTCCGCCGTGGTTGTTGTATTCGCCGTTACTTCTAAATG
ATGTCACATTTAGACTGTTTCGTAGATTGTGACGTCAGATACGTTGTTGT
CCTGCTATAAAGTTTACAACAAGATCGTAAAAACACGCCTCTGGCAGGTG
ATGGAGGAGAAGATCAACCCAGACAACGTGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20351:461..1243+

>mRNA_Ecto-sp13_S_contig20351.6709.1 ID=mRNA_Ecto-sp13_S_contig20351.6709.1|Name=mRNA_Ecto-sp13_S_contig20351.6709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20351:461..1243+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCAGCTGTTCTTCAGCGACCCTTCGGGCATGTTCGTGCGGTACAAGTGC
AAGGCCATCGGTTCGGGGAGCGAGGGGGCGCAGAGCACCCTCCAGGAGGG
CTACAGCGACTCTCTCACGCTCGCCGAGGCGGAGGCGTTGGCCGTATCCA
CGCTCAAGCAGGTGA
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