mRNA_Ecto-sp13_S_contig20348.6708.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20348.6708.1
Unique NamemRNA_Ecto-sp13_S_contig20348.6708.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20348.6708.1 vs. uniprot
Match: D8LRE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE3_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 1.720e-42
Identity = 72/85 (84.71%), Postives = 74/85 (87.06%), Query Frame = 1 
Query:    1 RGAGREDLLVHARPGDETATAYCVPILERVLERYPQPLCGDGEQAARAXXXXXXXXXACTAADQEKYEVVALVLTRTRDMASDVT 255
            RGAGREDLLVHARPGDETATAYCVP+LERVLERYPQPLCGD EQAARA         ACT AD+EKYEVVALVLTRTRDMASDVT
Sbjct:   45 RGAGREDLLVHARPGDETATAYCVPVLERVLERYPQPLCGDCEQAARAPAPSGGGGAACTGADREKYEVVALVLTRTRDMASDVT 129
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20348.6708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRE3_ECTSI1.720e-4284.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20348contigEcto-sp13_S_contig20348:1944..2659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size257
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-21_002750.1
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463021.4904413-CDS-Ecto-sp13_S_contig20348:1943..19761681463021.4904413-CDS-Ecto-sp13_S_contig20348:1943..1976Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20348 1944..1976 +
1681463021.5094738-CDS-Ecto-sp13_S_contig20348:2437..26591681463021.5094738-CDS-Ecto-sp13_S_contig20348:2437..2659Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20348 2438..2659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20348.6708.1prot_Ecto-sp13_S_contig20348.6708.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20348 1944..2659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20348.6708.1

>prot_Ecto-sp13_S_contig20348.6708.1 ID=prot_Ecto-sp13_S_contig20348.6708.1|Name=mRNA_Ecto-sp13_S_contig20348.6708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
RGAGREDLLVHARPGDETATAYCVPILERVLERYPQPLCGDGEQAARARA
SSGSGGGACTAADQEKYEVVALVLTRTRDMASDVT
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mRNA from alignment at Ecto-sp13_S_contig20348:1944..2659+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20348.6708.1 ID=mRNA_Ecto-sp13_S_contig20348.6708.1|Name=mRNA_Ecto-sp13_S_contig20348.6708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=716bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20348:1944..2659+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGGCGCTGGCAGGGAGGATCTGCTCGTGCACGTACGTCCTTTTCTTTT
TTTTGTCTCCGTCATATAGGCAAAGAACATAAGTACGAATCGTTTGGCAT
TTCACCTGTCCCTGTTATTATCACTGCGGACGTATGCATACTGCTGTGGC
GTCAAATTAAGACTGCCCTCGAAACGGTCAATTTCAGTCTTTTGGTTCGA
TTTATGGTTCGCTGGACTCTTCCGAGCGTACGTAAAGCGTCAGCTGTGTG
AGCTGTTCGAGCTTGAGCAACGGCCCGGCTGGCGTTCAGTGTTTCGAGCT
TTCATGGTAATCTTGCACCATCACCCCTTGACGACAACTGCTGTGCTCTC
CCATGAGCCAGCCCACTCCGGAGGGCACCCTGATGTGTGTAGCTTGAAAC
AGTGATAGACAAGTATGCTAGCTCGTACCGGAGAAGAGCCAAGCCCGCTC
GCATATGACGTTATCGCCATGTATGACGTTTGTGAAATGAGCAGGCAAGA
CCAGGAGACGAAACCGCCACGGCGTATTGCGTGCCCATCCTGGAGAGGGT
GCTGGAGCGGTATCCTCAACCCCTCTGCGGCGACGGTGAGCAAGCGGCGA
GAGCCCGGGCATCGTCGGGCAGTGGTGGTGGTGCTTGTACCGCAGCCGAT
CAGGAGAAGTACGAGGTGGTTGCGCTCGTGCTGACGCGGACCCGAGACAT
GGCGTCGGATGTTACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20348:1944..2659+

>mRNA_Ecto-sp13_S_contig20348.6708.1 ID=mRNA_Ecto-sp13_S_contig20348.6708.1|Name=mRNA_Ecto-sp13_S_contig20348.6708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20348:1944..2659+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGGCGCTGGCAGGGAGGATCTGCTCGTGCACGCAAGACCAGGAGACGA
AACCGCCACGGCGTATTGCGTGCCCATCCTGGAGAGGGTGCTGGAGCGGT
ATCCTCAACCCCTCTGCGGCGACGGTGAGCAAGCGGCGAGAGCCCGGGCA
TCGTCGGGCAGTGGTGGTGGTGCTTGTACCGCAGCCGATCAGGAGAAGTA
CGAGGTGGTTGCGCTCGTGCTGACGCGGACCCGAGACATGGCGTCGGATG
TTACG
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