mRNA_Ecto-sp13_S_contig2034.6706.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2034.6706.1
Unique NamemRNA_Ecto-sp13_S_contig2034.6706.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig2034.6706.1 vs. uniprot
Match: D7FYW2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYW2_ECTSI)

HSP 1 Score: 472 bits (1214), Expect = 1.170e-163
Identity = 236/253 (93.28%), Postives = 244/253 (96.44%), Query Frame = 1 
Query:    1 ISAVPSAAIALGLFCDVDSFAPLPAGWQLRQTSSASHMIPSGRPRSATSSRVMMMGGFGGPVKKKKVVGVGRGQDAYQRQVKSYQGLVSAGAEGADVYVHREGDDKFIFMGKAAWSSGITVEQALQFQRGLILGHVELLEPMWKDQPAPMRIFTAPLNSEVEVARNVHDLVRVLGPGKGKDVKVDKLTPQEVGLRPELYELGEPYFYVRKLDDGKCPAPPSEVMIETMDNLVAKGVVPSEESVDAAAPPSTDE 759
            ISAVPSAAIALGL CDVDSFAPL AGWQLRQTSSA HMIPSGRPRSATSSRVMMMGGFGGP KKKKVVGVGRGQDAYQRQVKSY GL  AGAEGADVYVHREGDDKFIFMGKAAWSSGITV+QALQFQRGLILGHVELLEPMWKD+PAPMRIFTAP+NSE+EVARN+HDLVRVLGPGKGKDVKVDKLTPQEVGLRPELYELGEPYFYVRKLDDGKCPAPPSEVMIETMDNLVAKGVVP++E+VDAAAPP  DE
Sbjct:    3 ISAVPSAAIALGLLCDVDSFAPLTAGWQLRQTSSAWHMIPSGRPRSATSSRVMMMGGFGGPEKKKKVVGVGRGQDAYQRQVKSYHGLTEAGAEGADVYVHREGDDKFIFMGKAAWSSGITVQQALQFQRGLILGHVELLEPMWKDKPAPMRIFTAPINSEIEVARNIHDLVRVLGPGKGKDVKVDKLTPQEVGLRPELYELGEPYFYVRKLDDGKCPAPPSEVMIETMDNLVAKGVVPAKETVDAAAPPPADE 255
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2034.6706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYW2_ECTSI1.170e-16393.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2034contigEcto-sp13_S_contig2034:11519..14927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1487
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_002700.1
Cds size651
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2034.6706.1prot_Ecto-sp13_S_contig2034.6706.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2034 12460..14816 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463021.333655-UTR-Ecto-sp13_S_contig2034:11518..118081681463021.333655-UTR-Ecto-sp13_S_contig2034:11518..11808Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2034 11519..11808 -
1681463021.3460903-UTR-Ecto-sp13_S_contig2034:12024..124591681463021.3460903-UTR-Ecto-sp13_S_contig2034:12024..12459Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2034 12025..12459 -
1681463021.4349086-UTR-Ecto-sp13_S_contig2034:14816..149271681463021.4349086-UTR-Ecto-sp13_S_contig2034:14816..14927Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2034 14817..14927 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463021.3553464-CDS-Ecto-sp13_S_contig2034:12459..126721681463021.3553464-CDS-Ecto-sp13_S_contig2034:12459..12672Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2034 12460..12672 -
1681463021.366858-CDS-Ecto-sp13_S_contig2034:13270..134411681463021.366858-CDS-Ecto-sp13_S_contig2034:13270..13441Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2034 13271..13441 -
1681463021.4050794-CDS-Ecto-sp13_S_contig2034:14021..140931681463021.4050794-CDS-Ecto-sp13_S_contig2034:14021..14093Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2034 14022..14093 -
1681463021.4197106-CDS-Ecto-sp13_S_contig2034:14621..148161681463021.4197106-CDS-Ecto-sp13_S_contig2034:14621..14816Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2034 14622..14816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2034.6706.1

>prot_Ecto-sp13_S_contig2034.6706.1 ID=prot_Ecto-sp13_S_contig2034.6706.1|Name=mRNA_Ecto-sp13_S_contig2034.6706.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=217bp
MIPSGRPRSATSSRVMMMGGFGGPVKKKKVVGVGRGQDAYQRQVKSYQGL
VSAGAEGADVYVHREGDDKFIFMGKAAWSSGITVEQALQFQRGLILGHVE
LLEPMWKDQPAPMRIFTAPLNSEVEVARNVHDLVRVLGPGKGKDVKVDKL
TPQEVGLRPELYELGEPYFYVRKLDDGKCPAPPSEVMIETMDNLVAKGVV
PSEESVDAAAPPSTDE*
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mRNA from alignment at Ecto-sp13_S_contig2034:11519..14927-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2034.6706.1 ID=mRNA_Ecto-sp13_S_contig2034.6706.1|Name=mRNA_Ecto-sp13_S_contig2034.6706.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3409bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2034:11519..14927- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCTCAGCGGTTCCAAGCGCAGCTATCGCGCTTGGTCTCTTCTGCGACGT
GGATAGTTTCGCACCGTTGCCAGCTGGATGGCAGCTCCGACAAACATCCT
CCGCGTCGCACATGATCCCAAGTGGTCGGCCAAGAAGCGCTACCAGCAGT
CGGGTCATGATGATGGGGGGGTTCGGTGGGCCGGTAAAGAAGAAGAAAGT
CGTGGGTGTAGGGAGGGGGCAGGATGCCTACCAGCGGCAGGTGAAGTCCT
ACCAAGGGCTTGTTTCGGCTGGTGCAGAAGGGGCGGACGTCTACGTACAC
CGAGAGGTACTGCGTCGCATACTCTACGATTCAACGTGATGTCACAGCAG
TAAATACAGCAGTGTACCAGGTCGTTCTGCATTACTGTAGAAGCGATGTG
TGAACTACATGTACATCGCAAACGTGTATGTTGCGGTGTTGACTGATTTG
CCTTTCGTAGGATAGGCTTCCCGCCGTCGATTGCAGGAAGACTGCAAAAA
ACAATGGAGTAGTAATGCAATAGTGCACCGGCTGCTGGACGGCCGGGTCA
CAGCAAATTCTTCTCGCGTGCACAGCTTTCGCGTCTTCTACAGCTTGCTT
CATGACAAACTACTCTGCATGTACTGCTGTAATACAGCGTATGGCACAAT
GAACAAAGATAACTCATTCCAGCCACTGGCAGTCGTTAACCTTCGCGAGG
GGCCCGAGAGATTTTTGTGAGGACAGCAGTCGGTGGCAAGGCAGAGAAGA
CTGACCAAACGTAAACATGCTCACCTGCCCCCCCTCCCCCTCCTCCCCCC
CGCGCTCCCATTGGCTGGACTGCATTGGCTTCAGGGGGATGACAAGTTTA
TATTCATGGGGAAAGCAGCTTGGTCATCAGGAATCACTGTGGAGCAGGCG
TTGCAGGTGTCTGCATCATATCTGGGCTGTCCGCGCTTTGAGTTGACGTG
TGTATAAAGCGAACAGTCTTACAATTGGGTCAGCGGATTGTGGGTGGTTG
CAGCCAACACAGCTGAGAAGAAACACAGACACACGTACGGTTTTGTCGCC
ATTTCCGTCCTGGCAGGGGGGTAGGTGGGCGGCAGAATGGAGTTGTGTGT
TTGATATATGATTTGCGGTTTGTTCCGAGAAAGCCGAGCGGCGGGGGCTG
GGGCTACTGCCGGAAAGGAGTGCCTGCGACGGCAGTGGAGCGCGCACTAA
ACGATACTCCTCCTAGGAGGTAAAAGTAAACATGGTCGAACGAAGAGGAT
GATCGGTGTGCCCACCGTTTGGGTGAAGCACAGATAAGGGGACACACGGA
TCCGATCGTGTTCCACCCCGTATTGCTTTGTGTATACTGAACCCATTTTC
TCCCAGCACCAGAAGTTACGAAGAAATTGTATCAATATTCACACGGAGCT
CGTTGTAATTTGTTGTGTCCTCTGCTCCCGCGGACCTGCCCGGTGCTCCC
ACACAAACACCGTGGTATCCCAAACACGGCTCATAGTTTCAGAGAGGGCT
AATTCTGGGGCACGTGGAGCTCTTGGAGCCTATGTGGAAGGATCAACCGG
CGCCGATGCGCATTTTCACCGCGCCCCTCAACTCCGAGGTGGAGGTGGCG
AGAAACGTCCACGACCTCGTGAGGGTGCTGGGCCCCGGCAAGGGCAAGGA
TGTTAAGGTAGGTGCAACGGTCGGGGTCATGAGGCCAAGAACATCCCTGG
GTTCAGCGTACATGTAGCCCGGCTGAACTCTATTTTCCCTGGCAACGACG
GTCGGTGAACATGCCCAGGCATCTTTGTACCGCTCTTTGTTTTTCCTGCA
TGTTTCGTGGGCGCTGACGCAGCGTACAGTCTCGTGTGCGTTGGGTAAAG
GAAGGAAAAGAGAATGGCATCAAAGCCGTTGGTTTGGGTGTACGGTGCTG
TCGGCGGTGCGCGGTGGAGATCGATCGTGTGTATATTTATGAATGACATG
TTTTCGTTTATCCGGTAAGGACCCAACAAATCAAATACGAACGTGTGGCA
CACACGACATGGCGTTTGCTGTTAAAGCGCTGCACTTCTCTATCTTCACG
CGTGAATGCGATGATGCTTTAACCGAAACGACACTACAGTATCTGTCAAG
TCTTGTCGATTCTGACAATCCTTGCTGGCGAGAAACGAGAGCTACCGGTG
GACTGGGCGCCGCCAACGCCGCTTGTGAATCGCCGTGCGTATGGTTTGGT
TGCAACGACAAGCCACTTGATTTCTTCTCCCCGTCCTTCGCATGTGTCCG
CGAAGGTGGACAAGTTGACCCCGCAAGAGGTGGGGCTGCGGCCTGAGCTG
TACGAGCTCGGCGAGCCGTACTTCTACGTTAGAAAGCTCGACGACGGCAA
GTGCCCCGCGCCCCCCTCGGAGGTGATGATCGAGACCATGGATAACCTGG
TCGCCAAGGGGGTCGTGCCTTCAGAGGAAAGCGTTGATGCGGCAGCTCCC
CCCTCGACGGACGAGTAGCCTGTCGGTGGACGTACAAGGAGTTTGCTACC
GAGGCGACTTGGCTCGACAGGCTAAAGATGGAGGCTATTCTGGTGATTGA
GAGTGTCGGGAGGGTTTGGGTGGCACACCGTGGTTGGTGGGATGGGTTGG
GGTGGCGGGATATGGGTGTGTGCGGCAGCCCCCTCCTTGGTGTGGCGTTG
GGGACCCCACTGTGGGGCTCGATAGATCATCGACTCGAGGCGAACAGGGC
ATTTGGGTGGTGCAGCCGACGAAGTTGGAAGTCGTGTCCATGAGGGGGGC
ACGCGAGCGAGTGGTGGACAAATGGGAGGGGATTGAAGCTATATTTTCAG
CGGGCCCCCTTCTTGACTCATTACTCTTCGTAGGAAATTTTTCTCTAGTA
GCGGGGCGACGATGATTCATGTACGTTGGCCGATACCTCACTTGTAGCGC
GATCGTTGTTGTTTACAAGTGTTGAATGGAGTGCTTTGACTAAGGGCTTG
AGACTCATCCCACTTGCAAAGAATTATCCTCGTCTAACCTCCGGGAACGC
CTGTTGATCGTCACATGTTGATTTCCCCATACCGCGCGGGCTCCCAAAGC
GCCAGGGCTATGTTCAGGTTGGTGTTAAGACGGTTTACGAAAGGTAAACC
CCGTCTCTGCCCCCCCGACAAATTTTGCCGTGGACGTCGTGTTGCAACTC
CCGACCAAAGACCCATATGGTGTGACTCCTTTCCCTGGCCGTGTTTCTAC
TACCGCACCATCCACAAGCCTTGACGGCTGAGGGAGCTGGGCGGTGTGTT
GATACACCGTGTTGGCTGTTGCCGAGGAATCGTCGGTGTTCGGTGTGGTC
GAGCGGAGGCGACTCCGGTACTGTCAAGTCCCTTTTTCGTCTGGCGGGGG
ATTGTCAGGCGATTTAGGCCGTCGCCCGATGTTATTAGATCCGCAAGTGT
CGTTTCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2034:11519..14927-

>mRNA_Ecto-sp13_S_contig2034.6706.1 ID=mRNA_Ecto-sp13_S_contig2034.6706.1|Name=mRNA_Ecto-sp13_S_contig2034.6706.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=651bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2034:11519..14927- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCCCAAGTGGTCGGCCAAGAAGCGCTACCAGCAGTCGGGTCATGAT
GATGGGGGGGTTCGGTGGGCCGGTAAAGAAGAAGAAAGTCGTGGGTGTAG
GGAGGGGGCAGGATGCCTACCAGCGGCAGGTGAAGTCCTACCAAGGGCTT
GTTTCGGCTGGTGCAGAAGGGGCGGACGTCTACGTACACCGAGAGGGGGA
TGACAAGTTTATATTCATGGGGAAAGCAGCTTGGTCATCAGGAATCACTG
TGGAGCAGGCGTTGCAGTTTCAGAGAGGGCTAATTCTGGGGCACGTGGAG
CTCTTGGAGCCTATGTGGAAGGATCAACCGGCGCCGATGCGCATTTTCAC
CGCGCCCCTCAACTCCGAGGTGGAGGTGGCGAGAAACGTCCACGACCTCG
TGAGGGTGCTGGGCCCCGGCAAGGGCAAGGATGTTAAGGTGGACAAGTTG
ACCCCGCAAGAGGTGGGGCTGCGGCCTGAGCTGTACGAGCTCGGCGAGCC
GTACTTCTACGTTAGAAAGCTCGACGACGGCAAGTGCCCCGCGCCCCCCT
CGGAGGTGATGATCGAGACCATGGATAACCTGGTCGCCAAGGGGGTCGTG
CCTTCAGAGGAAAGCGTTGATGCGGCAGCTCCCCCCTCGACGGACGAGTA
G
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