mRNA_Ecto-sp13_S_contig20335.6704.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Match: D7G3E6_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3E6_ECTSI) HSP 1 Score: 240 bits (612), Expect = 8.950e-78 Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 1
Query: 1 AGEKATARAPPGLCLANCQRAACNKTEEPTGRPFCCCSKCGAKYCSRECQVSDWKKDHKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHGGALGRGFVFVQ 348
AGEKATARAPPGLCLA+CQRAACNKTEEPTGRPFCCCSKCGAKYCSRECQV DWKKDHKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHG ALGRGFVFVQ
Sbjct: 74 AGEKATARAPPGLCLASCQRAACNKTEEPTGRPFCCCSKCGAKYCSRECQVIDWKKDHKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHGEALGRGFVFVQ 189
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Match: A0A835Z3P7_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3P7_9STRA) HSP 1 Score: 140 bits (352), Expect = 8.830e-39 Identity = 67/115 (58.26%), Postives = 80/115 (69.57%), Query Frame = 1
Query: 4 GEKATARAPPGLCLANCQRAACNKTEEPTGRPFCCCSKCGAKYCSRECQVSDWKKDHKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHGGALGRGFVFVQ 348
G+KA A+APPGL L CQ+ C TE G+PF CS CG++YC RECQVSDWK HK MC QLK + G A +D++ V+R L +VRLYLCPFAVCHG A+G GFVFVQ
Sbjct: 59 GDKAVAKAPPGLQLHKCQKPTCENTETMGGKPFNQCSGCGSRYCCRECQVSDWKSLHKPMCAQLKALSAG------AKVDKRDAVSRTLSKVRLYLCPFAVCHGSAIGPGFVFVQ 167
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Match: A0A7S4A4L9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A4L9_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.790e-15 Identity = 48/114 (42.11%), Postives = 61/114 (53.51%), Query Frame = 1
Query: 31 PGLCLANCQRAACNKTE-----EPTGRPFCCCSKCG-AKYCSRECQVSDWKKD--HKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHGGALGRGFVFVQ 348
P C R C KTE E T + F C+KC A+YCSRECQ+ DWKK HK MC QL + D R++V+ LG+VRLY+ PF V +G GF+F+Q
Sbjct: 48 PARTARKCARRDCPKTEPLEPPEDTAKRFAACAKCQTARYCSRECQIQDWKKGGRHKRMCPQLIAFKNFDR-----DQKRRAVIVGCLGKVRLYVFPFYVGKRAKVGDGFLFLQ 156
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Match: A0A7S2R2L0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2L0_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 1.130e-11 Identity = 41/94 (43.62%), Postives = 53/94 (56.38%), Query Frame = 1
Query: 88 TGRPFCCCSKCG-AKYCSRECQVSDWKKD------HKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHGGALGRGFVFVQ 348
T P CSKC A+YCSR+CQV+DWKK HK C LK + G +P D+ S ++ R+R Y CP+AV LGRGF+F+Q
Sbjct: 65 TSTPLSECSKCHVARYCSRDCQVADWKKSPNGGTAHKFTCAALKRV--GIHMQITSPDDQASARQDIVFRIRFYACPYAVNKSITLGRGFLFLQ 156
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Match: A0A7S0UGY3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UGY3_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 2.120e-11 Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 1
Query: 109 CSKCG-AKYCSRECQVSDWKKD-HKAMCGQLKEMRGGDAGGGRAPL---DRQSVVARVLGRVRLYLCPFAVCHGGALGRGFVFVQ 348
CSKCG A YCSRECQ+ DWK HK C + +APL ++++ + R+R Y+CP+AV LGRGF+F+Q
Sbjct: 56 CSKCGVAAYCSRECQIQDWKAGRHKMACPSYARVA-------KAPLCDKTKETIRNELFARIRFYVCPYAVFRTAELGRGFLFLQ 133
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Match: A0A1Z5JUW9_FISSO (MYND-type domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JUW9_FISSO) HSP 1 Score: 67.8 bits (164), Expect = 2.500e-11 Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 1
Query: 109 CSKCG-AKYCSRECQVSDWKKDHKAMCGQLKEMRGGDAGGGRAPLDRQSVVAR--VLGRVRLYLCPFAVCHGGALGRGFVFVQ 348
CS+C A YCS+ECQ+ DWK+ HK C + + DA G D S AR VL ++RLY P+AV ALGRGF+F+Q
Sbjct: 48 CSQCHVATYCSKECQIQDWKQRHKKYCAAYQRI---DAQGRWNTPDDDSAHARHHVLHQIRLYAMPYAVYQMQALGRGFLFIQ 127
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Match: A0A7S2EQI5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EQI5_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 4.660e-10 Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 1
Query: 109 CSKCG-AKYCSRECQVSDWKKD----HKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHGGALGRGFVFVQ 348
C+KC A YCSR+CQ++DWKK HK C K + G +P D+Q+ + RVR Y+C +AV LG+GF+FVQ
Sbjct: 121 CAKCQVASYCSRDCQIADWKKGQGGGHKYSCQAYKRI--GLKMILNSPTDQQNARDEIFTRVRFYICSYAVHKYQTLGKGFIFVQ 203
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Match: A0A7S0F684_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F684_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 5.110e-10 Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 1
Query: 109 CSKCG-AKYCSRECQVSDWKKD-HKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHGGALGRGFVFVQ 348
CSKC AKYCSR+CQV+DWK HK +C + + A + +V A + R+R Y CP+AV LG+GF+FVQ
Sbjct: 76 CSKCQTAKYCSRDCQVNDWKDGRHKLVCKSYQRLNDDFDNNADA---KAAVRAELYARIRFYACPYAVHKTTQLGKGFLFVQ 154
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Match: A0A1E7FEW3_9STRA (MYND-type domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEW3_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 4.650e-9 Identity = 34/87 (39.08%), Postives = 47/87 (54.02%), Query Frame = 1
Query: 112 SKCG----AKYCSRECQVSDWKKD-HKAMCGQLKEMRGGDAGGGRAPLD---RQSVVARVLGRVRLYLCPFAVCHGGALGRGFVFVQ 348
SKCG A YCSR+CQ+SDWK HK C + + P+ +Q + + R+R Y+CP+AV LGRGF+F+Q
Sbjct: 34 SKCGKCQVAAYCSRDCQMSDWKTGRHKMACPSYARVA-------QTPISDKTKQEIRNELFQRIRFYVCPYAVLRTSELGRGFLFLQ 113
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Match: B7G058_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G058_PHATC) HSP 1 Score: 61.2 bits (147), Expect = 7.250e-9 Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 1
Query: 109 CSKCG-AKYCSRECQVSDWK-KDHKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHGGALGRGFVFVQ 348
C++C A YC R+CQV DWK HK C + G + D+Q + GR+R Y+CP+AV LGRGF+F+Q
Sbjct: 44 CARCKVATYCQRDCQVEDWKIGKHKLACQSYARV--GPSMQIDDENDKQQACNELFGRIRFYVCPYAVHKATTLGRGFLFIQ 123 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig20335.6704.1 >prot_Ecto-sp13_S_contig20335.6704.1 ID=prot_Ecto-sp13_S_contig20335.6704.1|Name=mRNA_Ecto-sp13_S_contig20335.6704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp AGEKATARAPPGLCLANCQRAACNKTEEPTGRPFCCCSKCGAKYCSRECQback to top mRNA from alignment at Ecto-sp13_S_contig20335:3..723+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig20335.6704.1 ID=mRNA_Ecto-sp13_S_contig20335.6704.1|Name=mRNA_Ecto-sp13_S_contig20335.6704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=721bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20335:3..723+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20335:3..723+ >mRNA_Ecto-sp13_S_contig20335.6704.1 ID=mRNA_Ecto-sp13_S_contig20335.6704.1|Name=mRNA_Ecto-sp13_S_contig20335.6704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20335:3..723+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |