mRNA_Ecto-sp13_S_contig20335.6704.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20335.6704.1
Unique NamemRNA_Ecto-sp13_S_contig20335.6704.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Match: D7G3E6_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3E6_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 8.950e-78
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 1
Query:    1 AGEKATARAPPGLCLANCQRAACNKTEEPTGRPFCCCSKCGAKYCSRECQVSDWKKDHKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHGGALGRGFVFVQ 348
            AGEKATARAPPGLCLA+CQRAACNKTEEPTGRPFCCCSKCGAKYCSRECQV DWKKDHKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHG ALGRGFVFVQ
Sbjct:   74 AGEKATARAPPGLCLASCQRAACNKTEEPTGRPFCCCSKCGAKYCSRECQVIDWKKDHKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHGEALGRGFVFVQ 189          
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Match: A0A835Z3P7_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3P7_9STRA)

HSP 1 Score: 140 bits (352), Expect = 8.830e-39
Identity = 67/115 (58.26%), Postives = 80/115 (69.57%), Query Frame = 1
Query:    4 GEKATARAPPGLCLANCQRAACNKTEEPTGRPFCCCSKCGAKYCSRECQVSDWKKDHKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHGGALGRGFVFVQ 348
            G+KA A+APPGL L  CQ+  C  TE   G+PF  CS CG++YC RECQVSDWK  HK MC QLK +  G      A +D++  V+R L +VRLYLCPFAVCHG A+G GFVFVQ
Sbjct:   59 GDKAVAKAPPGLQLHKCQKPTCENTETMGGKPFNQCSGCGSRYCCRECQVSDWKSLHKPMCAQLKALSAG------AKVDKRDAVSRTLSKVRLYLCPFAVCHGSAIGPGFVFVQ 167          
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Match: A0A7S4A4L9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A4L9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.790e-15
Identity = 48/114 (42.11%), Postives = 61/114 (53.51%), Query Frame = 1
Query:   31 PGLCLANCQRAACNKTE-----EPTGRPFCCCSKCG-AKYCSRECQVSDWKKD--HKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHGGALGRGFVFVQ 348
            P      C R  C KTE     E T + F  C+KC  A+YCSRECQ+ DWKK   HK MC QL   +  D         R++V+   LG+VRLY+ PF V     +G GF+F+Q
Sbjct:   48 PARTARKCARRDCPKTEPLEPPEDTAKRFAACAKCQTARYCSRECQIQDWKKGGRHKRMCPQLIAFKNFDR-----DQKRRAVIVGCLGKVRLYVFPFYVGKRAKVGDGFLFLQ 156          
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Match: A0A7S2R2L0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2L0_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.130e-11
Identity = 41/94 (43.62%), Postives = 53/94 (56.38%), Query Frame = 1
Query:   88 TGRPFCCCSKCG-AKYCSRECQVSDWKKD------HKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHGGALGRGFVFVQ 348
            T  P   CSKC  A+YCSR+CQV+DWKK       HK  C  LK +  G      +P D+ S    ++ R+R Y CP+AV     LGRGF+F+Q
Sbjct:   65 TSTPLSECSKCHVARYCSRDCQVADWKKSPNGGTAHKFTCAALKRV--GIHMQITSPDDQASARQDIVFRIRFYACPYAVNKSITLGRGFLFLQ 156          
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Match: A0A7S0UGY3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UGY3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.120e-11
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 1
Query:  109 CSKCG-AKYCSRECQVSDWKKD-HKAMCGQLKEMRGGDAGGGRAPL---DRQSVVARVLGRVRLYLCPFAVCHGGALGRGFVFVQ 348
            CSKCG A YCSRECQ+ DWK   HK  C     +        +APL    ++++   +  R+R Y+CP+AV     LGRGF+F+Q
Sbjct:   56 CSKCGVAAYCSRECQIQDWKAGRHKMACPSYARVA-------KAPLCDKTKETIRNELFARIRFYVCPYAVFRTAELGRGFLFLQ 133          
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Match: A0A1Z5JUW9_FISSO (MYND-type domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JUW9_FISSO)

HSP 1 Score: 67.8 bits (164), Expect = 2.500e-11
Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 1
Query:  109 CSKCG-AKYCSRECQVSDWKKDHKAMCGQLKEMRGGDAGGGRAPLDRQSVVAR--VLGRVRLYLCPFAVCHGGALGRGFVFVQ 348
            CS+C  A YCS+ECQ+ DWK+ HK  C   + +   DA G     D  S  AR  VL ++RLY  P+AV    ALGRGF+F+Q
Sbjct:   48 CSQCHVATYCSKECQIQDWKQRHKKYCAAYQRI---DAQGRWNTPDDDSAHARHHVLHQIRLYAMPYAVYQMQALGRGFLFIQ 127          
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Match: A0A7S2EQI5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EQI5_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.660e-10
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 1
Query:  109 CSKCG-AKYCSRECQVSDWKKD----HKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHGGALGRGFVFVQ 348
            C+KC  A YCSR+CQ++DWKK     HK  C   K +  G      +P D+Q+    +  RVR Y+C +AV     LG+GF+FVQ
Sbjct:  121 CAKCQVASYCSRDCQIADWKKGQGGGHKYSCQAYKRI--GLKMILNSPTDQQNARDEIFTRVRFYICSYAVHKYQTLGKGFIFVQ 203          
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Match: A0A7S0F684_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F684_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.110e-10
Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 1
Query:  109 CSKCG-AKYCSRECQVSDWKKD-HKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHGGALGRGFVFVQ 348
            CSKC  AKYCSR+CQV+DWK   HK +C   + +         A   + +V A +  R+R Y CP+AV     LG+GF+FVQ
Sbjct:   76 CSKCQTAKYCSRDCQVNDWKDGRHKLVCKSYQRLNDDFDNNADA---KAAVRAELYARIRFYACPYAVHKTTQLGKGFLFVQ 154          
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Match: A0A1E7FEW3_9STRA (MYND-type domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEW3_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.650e-9
Identity = 34/87 (39.08%), Postives = 47/87 (54.02%), Query Frame = 1
Query:  112 SKCG----AKYCSRECQVSDWKKD-HKAMCGQLKEMRGGDAGGGRAPLD---RQSVVARVLGRVRLYLCPFAVCHGGALGRGFVFVQ 348
            SKCG    A YCSR+CQ+SDWK   HK  C     +        + P+    +Q +   +  R+R Y+CP+AV     LGRGF+F+Q
Sbjct:   34 SKCGKCQVAAYCSRDCQMSDWKTGRHKMACPSYARVA-------QTPISDKTKQEIRNELFQRIRFYVCPYAVLRTSELGRGFLFLQ 113          
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Match: B7G058_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G058_PHATC)

HSP 1 Score: 61.2 bits (147), Expect = 7.250e-9
Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 1
Query:  109 CSKCG-AKYCSRECQVSDWK-KDHKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHGGALGRGFVFVQ 348
            C++C  A YC R+CQV DWK   HK  C     +  G +       D+Q     + GR+R Y+CP+AV     LGRGF+F+Q
Sbjct:   44 CARCKVATYCQRDCQVEDWKIGKHKLACQSYARV--GPSMQIDDENDKQQACNELFGRIRFYVCPYAVHKATTLGRGFLFIQ 123          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20335.6704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7G3E6_ECTSI8.950e-7897.41MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835Z3P7_9STRA8.830e-3958.26MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A7S4A4L9_9STRA1.790e-1542.11Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2R2L0_9STRA1.130e-1143.62Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S0UGY3_9STRA2.120e-1142.35Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A1Z5JUW9_FISSO2.500e-1146.99MYND-type domain-containing protein n=1 Tax=Fistul... [more]
A0A7S2EQI5_9STRA4.660e-1042.35Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S0F684_9STRA5.110e-1043.90Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A1E7FEW3_9STRA4.650e-939.08MYND-type domain-containing protein (Fragment) n=1... [more]
B7G058_PHATC7.250e-940.24Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20335contigEcto-sp13_S_contig20335:3..723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score242.3
Seed ortholog evalue1.1e-61
Seed eggNOG ortholog2880.D7G3E6
Model size348
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2CYFZ@1,2S44W@2759
Cds size348
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463021.1095324-CDS-Ecto-sp13_S_contig20335:2..1521681463021.1095324-CDS-Ecto-sp13_S_contig20335:2..152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20335 3..152 +
1681463021.1203513-CDS-Ecto-sp13_S_contig20335:525..7231681463021.1203513-CDS-Ecto-sp13_S_contig20335:525..723Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20335 526..723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20335.6704.1prot_Ecto-sp13_S_contig20335.6704.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20335 3..723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20335.6704.1

>prot_Ecto-sp13_S_contig20335.6704.1 ID=prot_Ecto-sp13_S_contig20335.6704.1|Name=mRNA_Ecto-sp13_S_contig20335.6704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
AGEKATARAPPGLCLANCQRAACNKTEEPTGRPFCCCSKCGAKYCSRECQ
VSDWKKDHKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPF
AVCHGGALGRGFVFVQ
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mRNA from alignment at Ecto-sp13_S_contig20335:3..723+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20335.6704.1 ID=mRNA_Ecto-sp13_S_contig20335.6704.1|Name=mRNA_Ecto-sp13_S_contig20335.6704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=721bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20335:3..723+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGGAGAGAAGGCCACCGCACGCGCTCCGCCGGGGCTATGTTTGGCGAA TTGTCAACGCGCTGCATGCAACAAGACGGAGGAGCCCACGGGGCGTCCGT TTTGCTGCTGTTCCAAGTGCGGCGCTAAGTACTGCAGCCGGGAGTGTCAG GTGACTACTCACACCTTTTTCGTATCCTAGATACCTTCCACCTCCTACCA TCCGTCCCCCGCCCCCGAGCTCTGGCCTCGCGGTGACAGCACGTACGGTT TGCCACTACTGCTGCGGCTCTAGTGCTGCGGCTCTAGTGCTGCGGCTCTA GTGCTGACACTGGTGGACTCATCCCGCTTGAGTTGCGGGTCGAGAATCCC AGCTTGCTACAAGCAGCGTCGACCTCTTTATGTATGAGATTCTGGCGAAG ACAAAAAAAAAAACTCGTTTAGATACTATCACGTCCTTAGACAATGGCGT CACTCTATCGCGGCATTCTTCTATTCGCTTCCTTTTCTCTCGATGCTGCA CGGGGTGAAAAATGTCGCGGAAGGTGAGCGACTGGAAGAAGGATCATAAG GCCATGTGCGGCCAGCTGAAGGAAATGCGAGGCGGGGACGCGGGGGGGGG GCGGGCGCCGCTCGACAGACAGAGCGTGGTGGCGAGGGTTCTCGGGCGGG TGCGGCTCTACTTGTGCCCGTTTGCGGTGTGCCACGGGGGGGCGCTCGGT AGAGGCTTCGTTTTCGTGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20335:3..723+

>mRNA_Ecto-sp13_S_contig20335.6704.1 ID=mRNA_Ecto-sp13_S_contig20335.6704.1|Name=mRNA_Ecto-sp13_S_contig20335.6704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20335:3..723+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGGAGAGAAGGCCACCGCACGCGCTCCGCCGGGGCTATGTTTGGCGAA
TTGTCAACGCGCTGCATGCAACAAGACGGAGGAGCCCACGGGGCGTCCGT
TTTGCTGCTGTTCCAAGTGCGGCGCTAAGTACTGCAGCCGGGAGTGTCAG
GTGAGCGACTGGAAGAAGGATCATAAGGCCATGTGCGGCCAGCTGAAGGA
AATGCGAGGCGGGGACGCGGGGGGGGGGCGGGCGCCGCTCGACAGACAGA
GCGTGGTGGCGAGGGTTCTCGGGCGGGTGCGGCTCTACTTGTGCCCGTTT
GCGGTGTGCCACGGGGGGGCGCTCGGTAGAGGCTTCGTTTTCGTGCAG
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