mRNA_Ecto-sp13_S_contig20333.6703.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20333.6703.1
Unique NamemRNA_Ecto-sp13_S_contig20333.6703.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Match: A0A0C9ZMZ6_9AGAM (Herpes_Helicase domain-containing protein (Fragment) n=1 Tax=Pisolithus microcarpus 441 TaxID=765257 RepID=A0A0C9ZMZ6_9AGAM)

HSP 1 Score: 87.4 bits (215), Expect = 1.620e-20
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    1 SPRILDIEVICEGSP--IVKIPRICFEVQVGSRGITFHRFQFPVRFCYAITISKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT 249
            +PRIL+  V+ EG    +V IPR+  +  +    + FHR QFPV   YA+TI+K+QG ++K VG+DLR EVF HG LYVALSR T
Sbjct:    5 TPRILECCVLKEGGDGEVVLIPRVALDCGLEDSPVPFHRRQFPVHLAYAMTINKSQGQSVKNVGIDLRSEVFSHGQLYVALSRCT 89          
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Match: A0A1Q5UDF3_9EURO (ATP-dependent DNA helicase n=1 Tax=Penicillium subrubescens TaxID=1316194 RepID=A0A1Q5UDF3_9EURO)

HSP 1 Score: 80.9 bits (198), Expect = 5.730e-16
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   55 IPRICFEVQVGSRGITFHRFQFPVRFCYAITISKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT 249
            IPRI  E   G    T  R QFP+R C+A+TI+K+QG +LKQVG+DLR   F HG LYVALSR T
Sbjct:  791 IPRIPLETTEGQLSFTLRRVQFPIRLCFAMTINKSQGQSLKQVGVDLRVPAFSHGQLYVALSRVT 855          
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Match: UPI000E704C93 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E704C93)

HSP 1 Score: 78.2 bits (191), Expect = 5.800e-16
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 1
Query:   49 VKIPRICFEVQVGSRGITFHRFQFPVRFCYAITISKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT 249
            V +PRI F+  +    I   R QFP+R  YA+TI+K+QG +++ VG+DL+  VFCHG LYVALSR T
Sbjct:  115 VMLPRILFQPNISELNINMLRRQFPIRLAYAMTINKSQGQSVQHVGIDLKTPVFCHGQLYVALSRCT 181          
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Match: A0A2K2C1F8_POPTR (ATP-dependent DNA helicase n=2 Tax=Populus trichocarpa TaxID=3694 RepID=A0A2K2C1F8_POPTR)

HSP 1 Score: 80.1 bits (196), Expect = 9.560e-16
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    1 SPRILDIEVICEGSPI---VKIPRICFEVQVGSRGITFHRFQFPVRFCYAITISKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT 249
            S R+++ ++I  GS I   V IPRI F +  G    T  R QFP+R CYA+TI+K+QG +LK VG+ L+ +VF HG LYVALSR T
Sbjct:  333 SARVIEAQIIT-GSNIGNRVFIPRIIFPINEGRCPFTIKRRQFPLRLCYAMTINKSQGQSLKTVGVFLKEQVFTHGQLYVALSRVT 417          
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Match: U7DWV7_POPTR (ATP-dependent DNA helicase n=1 Tax=Populus trichocarpa TaxID=3694 RepID=U7DWV7_POPTR)

HSP 1 Score: 80.1 bits (196), Expect = 1.070e-15
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    1 SPRILDIEVICEGSPI---VKIPRICFEVQVGSRGITFHRFQFPVRFCYAITISKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT 249
            S R+++ ++I  GS I   V IPRI F +  G    T  R QFP+R CYA+TI+K+QG +LK VG+ L+ +VF HG LYVALSR T
Sbjct:  768 SARVIEAQIIT-GSNIGNRVFIPRIIFPINEGRCPFTIKRRQFPLRLCYAMTINKSQGQSLKTVGVFLKEQVFTHGQLYVALSRVT 852          
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Match: A0A1R3GLF8_COCAP (ATP-dependent DNA helicase n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3GLF8_COCAP)

HSP 1 Score: 78.2 bits (191), Expect = 5.150e-15
Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 1
Query:   49 VKIPRICFEVQVGSRGITFHRFQFPVRFCYAITISKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT 249
            V IPRI  + + G    TF R QFPVR C+A+TI K+QG TLKQVG+ L   VF HG LYVA+SR T
Sbjct: 1439 VCIPRISMQAKEGRLPFTFQRRQFPVRLCFAMTIHKSQGQTLKQVGVYLPQPVFSHGQLYVAISRVT 1505          
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Match: A0A2K1Z0P6_POPTR (ATP-dependent DNA helicase n=1 Tax=Populus trichocarpa TaxID=3694 RepID=A0A2K1Z0P6_POPTR)

HSP 1 Score: 77.8 bits (190), Expect = 6.540e-15
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    1 SPRILDIEVICEGSPI---VKIPRICFEVQVGSRGITFHRFQFPVRFCYAITISKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT 249
            S R+++ ++I  GS I   V IP I F +  G    T  R QFP+R CYA+TI+K+QG +LK VG+ L+ +VF HG LYVALSR T
Sbjct:  358 SARVIEAQIIT-GSNIGNRVFIPIIIFPINEGRCSFTIKRRQFPLRLCYAMTINKSQGQSLKTVGVFLKEQVFTHGQLYVALSRVT 442          
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Match: UPI000E701C1D (uncharacterized protein LOC113290665 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E701C1D)

HSP 1 Score: 77.8 bits (190), Expect = 6.950e-15
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 1
Query:   46 IVKIPRICFEVQVGSRGITFHRFQFPVRFCYAITISKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT 249
            +V  PRI F+  +    I   R QFP+R  YA+TI+K+QG ++K VG+ L+  VFCHG LYVALSR T
Sbjct:  869 VVMFPRISFQPNISELNINMLRRQFPIRLAYAMTINKSQGQSVKHVGIGLKTSVFCHGQLYVALSRCT 936          
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Match: A0A836YED1_9ROSI (ATP-dependent DNA helicase n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836YED1_9ROSI)

HSP 1 Score: 77.4 bits (189), Expect = 8.800e-15
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    7 RILDIEVICEGSPI---VKIPRICFEVQVGSRGITFHRFQFPVRFCYAITISKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT 249
            RI++ ++I  GS I   V IPRI F V       T  R QFPVR CYA+TI+K+QG +LK VG+ L+ +VF HG LYVALSR T
Sbjct:  335 RIIEAQIIT-GSHIGDQVFIPRIIFPVNDDKCPFTIKRRQFPVRLCYAMTINKSQGQSLKFVGVFLKEQVFTHGQLYVALSRVT 417          
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Match: A0A837AWL2_9ROSI (ATP-dependent DNA helicase n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A837AWL2_9ROSI)

HSP 1 Score: 77.4 bits (189), Expect = 9.020e-15
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    7 RILDIEVICEGSPI---VKIPRICFEVQVGSRGITFHRFQFPVRFCYAITISKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT 249
            RI++ ++I  GS I   V IPRI F V       T  R QFPVR CYA+TI+K+QG +LK VG+ L+ +VF HG LYVALSR T
Sbjct:  370 RIIEAQIIT-GSHIGDQVFIPRIIFPVNDDKCPFTIKRRQFPVRLCYAMTINKSQGQSLKFVGVFLKEQVFTHGQLYVALSRVT 452          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C9ZMZ6_9AGAM1.620e-2051.76Herpes_Helicase domain-containing protein (Fragmen... [more]
A0A1Q5UDF3_9EURO5.730e-1658.46ATP-dependent DNA helicase n=1 Tax=Penicillium sub... [more]
UPI000E704C935.800e-1652.24ATP-dependent DNA helicase PIF1-like n=1 Tax=Papav... [more]
A0A2K2C1F8_POPTR9.560e-1651.16ATP-dependent DNA helicase n=2 Tax=Populus trichoc... [more]
U7DWV7_POPTR1.070e-1551.16ATP-dependent DNA helicase n=1 Tax=Populus trichoc... [more]
A0A1R3GLF8_COCAP5.150e-1558.21ATP-dependent DNA helicase n=2 Tax=Corchorus TaxID... [more]
A0A2K1Z0P6_POPTR6.540e-1550.00ATP-dependent DNA helicase n=1 Tax=Populus trichoc... [more]
UPI000E701C1D6.950e-1551.47uncharacterized protein LOC113290665 n=1 Tax=Papav... [more]
A0A836YED1_9ROSI8.800e-1553.57ATP-dependent DNA helicase n=1 Tax=Salix suchowens... [more]
A0A837AWL2_9ROSI9.020e-1553.57ATP-dependent DNA helicase n=1 Tax=Salix suchowens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20333contigEcto-sp13_S_contig20333:1989..2237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start0
Seed ortholog score83.6
Seed ortholog evalue4.8e-14
Seed eggNOG ortholog3694.POPTR_0681s00200.1
Model size249
KEGG koko:K07466,ko:K15255
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Belongs to the helicase family
EggNOG OGs37Q72@33090,3GCCF@35493,4JS2N@91835,COG0507@1,KOG0987@2759
EC3.6.4.12
Cds size249
COG Functional cat.D
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03029,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463021.0616271-CDS-Ecto-sp13_S_contig20333:1988..22371681463021.0616271-CDS-Ecto-sp13_S_contig20333:1988..2237Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20333 1989..2237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20333.6703.1prot_Ecto-sp13_S_contig20333.6703.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20333 1989..2237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20333.6703.1

>prot_Ecto-sp13_S_contig20333.6703.1 ID=prot_Ecto-sp13_S_contig20333.6703.1|Name=mRNA_Ecto-sp13_S_contig20333.6703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
SPRILDIEVICEGSPIVKIPRICFEVQVGSRGITFHRFQFPVRFCYAITI
SKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT
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mRNA from alignment at Ecto-sp13_S_contig20333:1989..2237-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20333.6703.1 ID=mRNA_Ecto-sp13_S_contig20333.6703.1|Name=mRNA_Ecto-sp13_S_contig20333.6703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20333:1989..2237- (Ectocarpus species13 EcNAP12_S_4_19m)
TCACCGCGGATCCTCGACATCGAGGTCATTTGCGAAGGATCACCTATTGT AAAAATACCGCGCATTTGTTTCGAAGTGCAAGTAGGATCGCGTGGTATAA CATTCCACCGTTTTCAGTTCCCTGTCCGGTTCTGTTACGCAATCACAATT AGCAAGGCACAGGGATCAACGTTGAAACAGGTGGGCCTTGATCTCAGAGG TGAAGTATTCTGCCATGGAATGCTCTACGTTGCTCTAAGTAGAACAACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20333:1989..2237-

>mRNA_Ecto-sp13_S_contig20333.6703.1 ID=mRNA_Ecto-sp13_S_contig20333.6703.1|Name=mRNA_Ecto-sp13_S_contig20333.6703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20333:1989..2237- (Ectocarpus species13 EcNAP12_S_4_19m)
TCACCGCGGATCCTCGACATCGAGGTCATTTGCGAAGGATCACCTATTGT
AAAAATACCGCGCATTTGTTTCGAAGTGCAAGTAGGATCGCGTGGTATAA
CATTCCACCGTTTTCAGTTCCCTGTCCGGTTCTGTTACGCAATCACAATT
AGCAAGGCACAGGGATCAACGTTGAAACAGGTGGGCCTTGATCTCAGAGG
TGAAGTATTCTGCCATGGAATGCTCTACGTTGCTCTAAGTAGAACAACG
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