mRNA_Ecto-sp13_S_contig20333.6703.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Match: A0A0C9ZMZ6_9AGAM (Herpes_Helicase domain-containing protein (Fragment) n=1 Tax=Pisolithus microcarpus 441 TaxID=765257 RepID=A0A0C9ZMZ6_9AGAM) HSP 1 Score: 87.4 bits (215), Expect = 1.620e-20 Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = 1
Query: 1 SPRILDIEVICEGSP--IVKIPRICFEVQVGSRGITFHRFQFPVRFCYAITISKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT 249
+PRIL+ V+ EG +V IPR+ + + + FHR QFPV YA+TI+K+QG ++K VG+DLR EVF HG LYVALSR T
Sbjct: 5 TPRILECCVLKEGGDGEVVLIPRVALDCGLEDSPVPFHRRQFPVHLAYAMTINKSQGQSVKNVGIDLRSEVFSHGQLYVALSRCT 89
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Match: A0A1Q5UDF3_9EURO (ATP-dependent DNA helicase n=1 Tax=Penicillium subrubescens TaxID=1316194 RepID=A0A1Q5UDF3_9EURO) HSP 1 Score: 80.9 bits (198), Expect = 5.730e-16 Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 1
Query: 55 IPRICFEVQVGSRGITFHRFQFPVRFCYAITISKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT 249
IPRI E G T R QFP+R C+A+TI+K+QG +LKQVG+DLR F HG LYVALSR T
Sbjct: 791 IPRIPLETTEGQLSFTLRRVQFPIRLCFAMTINKSQGQSLKQVGVDLRVPAFSHGQLYVALSRVT 855
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Match: UPI000E704C93 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E704C93) HSP 1 Score: 78.2 bits (191), Expect = 5.800e-16 Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 1
Query: 49 VKIPRICFEVQVGSRGITFHRFQFPVRFCYAITISKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT 249
V +PRI F+ + I R QFP+R YA+TI+K+QG +++ VG+DL+ VFCHG LYVALSR T
Sbjct: 115 VMLPRILFQPNISELNINMLRRQFPIRLAYAMTINKSQGQSVQHVGIDLKTPVFCHGQLYVALSRCT 181
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Match: A0A2K2C1F8_POPTR (ATP-dependent DNA helicase n=2 Tax=Populus trichocarpa TaxID=3694 RepID=A0A2K2C1F8_POPTR) HSP 1 Score: 80.1 bits (196), Expect = 9.560e-16 Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 1
Query: 1 SPRILDIEVICEGSPI---VKIPRICFEVQVGSRGITFHRFQFPVRFCYAITISKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT 249
S R+++ ++I GS I V IPRI F + G T R QFP+R CYA+TI+K+QG +LK VG+ L+ +VF HG LYVALSR T
Sbjct: 333 SARVIEAQIIT-GSNIGNRVFIPRIIFPINEGRCPFTIKRRQFPLRLCYAMTINKSQGQSLKTVGVFLKEQVFTHGQLYVALSRVT 417
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Match: U7DWV7_POPTR (ATP-dependent DNA helicase n=1 Tax=Populus trichocarpa TaxID=3694 RepID=U7DWV7_POPTR) HSP 1 Score: 80.1 bits (196), Expect = 1.070e-15 Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 1
Query: 1 SPRILDIEVICEGSPI---VKIPRICFEVQVGSRGITFHRFQFPVRFCYAITISKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT 249
S R+++ ++I GS I V IPRI F + G T R QFP+R CYA+TI+K+QG +LK VG+ L+ +VF HG LYVALSR T
Sbjct: 768 SARVIEAQIIT-GSNIGNRVFIPRIIFPINEGRCPFTIKRRQFPLRLCYAMTINKSQGQSLKTVGVFLKEQVFTHGQLYVALSRVT 852
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Match: A0A1R3GLF8_COCAP (ATP-dependent DNA helicase n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3GLF8_COCAP) HSP 1 Score: 78.2 bits (191), Expect = 5.150e-15 Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 1
Query: 49 VKIPRICFEVQVGSRGITFHRFQFPVRFCYAITISKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT 249
V IPRI + + G TF R QFPVR C+A+TI K+QG TLKQVG+ L VF HG LYVA+SR T
Sbjct: 1439 VCIPRISMQAKEGRLPFTFQRRQFPVRLCFAMTIHKSQGQTLKQVGVYLPQPVFSHGQLYVAISRVT 1505
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Match: A0A2K1Z0P6_POPTR (ATP-dependent DNA helicase n=1 Tax=Populus trichocarpa TaxID=3694 RepID=A0A2K1Z0P6_POPTR) HSP 1 Score: 77.8 bits (190), Expect = 6.540e-15 Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 1
Query: 1 SPRILDIEVICEGSPI---VKIPRICFEVQVGSRGITFHRFQFPVRFCYAITISKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT 249
S R+++ ++I GS I V IP I F + G T R QFP+R CYA+TI+K+QG +LK VG+ L+ +VF HG LYVALSR T
Sbjct: 358 SARVIEAQIIT-GSNIGNRVFIPIIIFPINEGRCSFTIKRRQFPLRLCYAMTINKSQGQSLKTVGVFLKEQVFTHGQLYVALSRVT 442
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Match: UPI000E701C1D (uncharacterized protein LOC113290665 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E701C1D) HSP 1 Score: 77.8 bits (190), Expect = 6.950e-15 Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 1
Query: 46 IVKIPRICFEVQVGSRGITFHRFQFPVRFCYAITISKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT 249
+V PRI F+ + I R QFP+R YA+TI+K+QG ++K VG+ L+ VFCHG LYVALSR T
Sbjct: 869 VVMFPRISFQPNISELNINMLRRQFPIRLAYAMTINKSQGQSVKHVGIGLKTSVFCHGQLYVALSRCT 936
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Match: A0A836YED1_9ROSI (ATP-dependent DNA helicase n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836YED1_9ROSI) HSP 1 Score: 77.4 bits (189), Expect = 8.800e-15 Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 1
Query: 7 RILDIEVICEGSPI---VKIPRICFEVQVGSRGITFHRFQFPVRFCYAITISKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT 249
RI++ ++I GS I V IPRI F V T R QFPVR CYA+TI+K+QG +LK VG+ L+ +VF HG LYVALSR T
Sbjct: 335 RIIEAQIIT-GSHIGDQVFIPRIIFPVNDDKCPFTIKRRQFPVRLCYAMTINKSQGQSLKFVGVFLKEQVFTHGQLYVALSRVT 417
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Match: A0A837AWL2_9ROSI (ATP-dependent DNA helicase n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A837AWL2_9ROSI) HSP 1 Score: 77.4 bits (189), Expect = 9.020e-15 Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 1
Query: 7 RILDIEVICEGSPI---VKIPRICFEVQVGSRGITFHRFQFPVRFCYAITISKAQGSTLKQVGLDLRGEVFCHGMLYVALSRTT 249
RI++ ++I GS I V IPRI F V T R QFPVR CYA+TI+K+QG +LK VG+ L+ +VF HG LYVALSR T
Sbjct: 370 RIIEAQIIT-GSHIGDQVFIPRIIFPVNDDKCPFTIKRRQFPVRLCYAMTINKSQGQSLKFVGVFLKEQVFTHGQLYVALSRVT 452 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20333.6703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig20333.6703.1 >prot_Ecto-sp13_S_contig20333.6703.1 ID=prot_Ecto-sp13_S_contig20333.6703.1|Name=mRNA_Ecto-sp13_S_contig20333.6703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp SPRILDIEVICEGSPIVKIPRICFEVQVGSRGITFHRFQFPVRFCYAITIback to top mRNA from alignment at Ecto-sp13_S_contig20333:1989..2237- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig20333.6703.1 ID=mRNA_Ecto-sp13_S_contig20333.6703.1|Name=mRNA_Ecto-sp13_S_contig20333.6703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20333:1989..2237- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20333:1989..2237- >mRNA_Ecto-sp13_S_contig20333.6703.1 ID=mRNA_Ecto-sp13_S_contig20333.6703.1|Name=mRNA_Ecto-sp13_S_contig20333.6703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20333:1989..2237- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |