mRNA_Ecto-sp13_S_contig20316.6696.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20316.6696.1
Unique NamemRNA_Ecto-sp13_S_contig20316.6696.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20316.6696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20316contigEcto-sp13_S_contig20316:2441..3005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size565
Hectar predicted targeting categoryother localisation
Exons1
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463020.4884744-UTR-Ecto-sp13_S_contig20316:2440..24971681463020.4884744-UTR-Ecto-sp13_S_contig20316:2440..2497Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20316 2441..2497 +
1681463020.5112417-UTR-Ecto-sp13_S_contig20316:2911..30051681463020.5112417-UTR-Ecto-sp13_S_contig20316:2911..3005Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20316 2912..3005 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463020.5012374-CDS-Ecto-sp13_S_contig20316:2497..29111681463020.5012374-CDS-Ecto-sp13_S_contig20316:2497..2911Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20316 2498..2911 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20316.6696.1prot_Ecto-sp13_S_contig20316.6696.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20316 2498..2911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20316.6696.1

>prot_Ecto-sp13_S_contig20316.6696.1 ID=prot_Ecto-sp13_S_contig20316.6696.1|Name=mRNA_Ecto-sp13_S_contig20316.6696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
MGRGMHQHEKTKRDICHIACQYEQVLRTPPMRGVDCGMVWRSLEHSRARF
LCPFGMSTAGAGFVTSAKFPGTSQKEGHRTSEGPALKTRLLHNQAVGTDR
YVLRELSTPSTKQSIEISLLPLLREHRALNSLRRVVP*
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mRNA from alignment at Ecto-sp13_S_contig20316:2441..3005+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20316.6696.1 ID=mRNA_Ecto-sp13_S_contig20316.6696.1|Name=mRNA_Ecto-sp13_S_contig20316.6696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=565bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20316:2441..3005+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCGGGTCGAGGGCGGGTAGAGTGCATTGAAAAACGAAATCAAAGAGAC
AAGAGTGATGGGGAGAGGCATGCATCAGCACGAGAAAACTAAGCGCGACA
TTTGCCACATCGCATGTCAGTACGAACAGGTACTTCGAACACCCCCAATG
CGCGGAGTTGACTGCGGCATGGTCTGGCGATCACTAGAGCATAGCAGGGC
ACGTTTTTTATGCCCCTTCGGCATGTCTACCGCCGGCGCCGGCTTTGTAA
CCTCAGCAAAGTTTCCCGGAACTTCGCAAAAAGAGGGTCATCGCACATCT
GAGGGACCGGCTTTGAAGACTCGATTGCTCCACAACCAAGCAGTGGGCAC
CGATCGATACGTCTTAAGAGAGCTCTCGACGCCATCCACCAAACAATCCA
TTGAAATATCGCTACTTCCATTGCTCAGGGAGCATCGAGCTTTGAATAGT
CTTAGGAGGGTTGTGCCATAAAACCAGCAGCGTTACGGTTGTCAAGCAGA
GCATAAGGTAGCAGGTGGTGGCGATCTTTCTGGAATTCACCTGCCCTTGG
CGACTGACTTGAAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20316:2441..3005+

>mRNA_Ecto-sp13_S_contig20316.6696.1 ID=mRNA_Ecto-sp13_S_contig20316.6696.1|Name=mRNA_Ecto-sp13_S_contig20316.6696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20316:2441..3005+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGAGAGGCATGCATCAGCACGAGAAAACTAAGCGCGACATTTGCCA
CATCGCATGTCAGTACGAACAGGTACTTCGAACACCCCCAATGCGCGGAG
TTGACTGCGGCATGGTCTGGCGATCACTAGAGCATAGCAGGGCACGTTTT
TTATGCCCCTTCGGCATGTCTACCGCCGGCGCCGGCTTTGTAACCTCAGC
AAAGTTTCCCGGAACTTCGCAAAAAGAGGGTCATCGCACATCTGAGGGAC
CGGCTTTGAAGACTCGATTGCTCCACAACCAAGCAGTGGGCACCGATCGA
TACGTCTTAAGAGAGCTCTCGACGCCATCCACCAAACAATCCATTGAAAT
ATCGCTACTTCCATTGCTCAGGGAGCATCGAGCTTTGAATAGTCTTAGGA
GGGTTGTGCCATAA
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