mRNA_Ecto-sp13_S_contig20316.6695.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20316.6695.1
Unique NamemRNA_Ecto-sp13_S_contig20316.6695.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20316.6695.1 vs. uniprot
Match: D8LE73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE73_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 1.230e-47
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:  250 MEELSGVIEKADSVLLVGHGNAKSNIAEVLASALCERQPGLTDKIEDVLRVDGKHITQNQLLKLGRRHLTHTEDPRRPT 486
            MEELSGVIEKADSVLLVGHGNAKSNIAEVLASALCERQPGLTDKIEDVLRVDGKHITQNQLLKLGRRHLTHTEDPRRPT
Sbjct:    1 MEELSGVIEKADSVLLVGHGNAKSNIAEVLASALCERQPGLTDKIEDVLRVDGKHITQNQLLKLGRRHLTHTEDPRRPT 79
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20316.6695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE73_ECTSI1.230e-47100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20316contigEcto-sp13_S_contig20316:405..3057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size489
Hectar predicted targeting categoryother localisation
Exons5
Cds size489
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463020.5379848-CDS-Ecto-sp13_S_contig20316:404..5181681463020.5379848-CDS-Ecto-sp13_S_contig20316:404..518Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20316 405..518 -
1681463020.5479157-CDS-Ecto-sp13_S_contig20316:1137..12151681463020.5479157-CDS-Ecto-sp13_S_contig20316:1137..1215Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20316 1138..1215 -
1681463020.5595233-CDS-Ecto-sp13_S_contig20316:1586..16761681463020.5595233-CDS-Ecto-sp13_S_contig20316:1586..1676Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20316 1587..1676 -
1681463020.5776012-CDS-Ecto-sp13_S_contig20316:2268..23981681463020.5776012-CDS-Ecto-sp13_S_contig20316:2268..2398Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20316 2269..2398 -
1681463020.5895956-CDS-Ecto-sp13_S_contig20316:2980..30571681463020.5895956-CDS-Ecto-sp13_S_contig20316:2980..3057Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20316 2981..3057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20316.6695.1prot_Ecto-sp13_S_contig20316.6695.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20316 405..3057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20316.6695.1

>prot_Ecto-sp13_S_contig20316.6695.1 ID=prot_Ecto-sp13_S_contig20316.6695.1|Name=mRNA_Ecto-sp13_S_contig20316.6695.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp
APEGSLVLIEVTKKHAKVFKSVAKGSVPEVVEPVDEWRVHETSNREKRSQ
GQGKHHAEKARERGEAGRIADPVAEEAYLVKFYMEELSGVIEKADSVLLV
GHGNAKSNIAEVLASALCERQPGLTDKIEDVLRVDGKHITQNQLLKLGRR
HLTHTEDPRRPT*
back to top

mRNA from alignment at Ecto-sp13_S_contig20316:405..3057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20316.6695.1 ID=mRNA_Ecto-sp13_S_contig20316.6695.1|Name=mRNA_Ecto-sp13_S_contig20316.6695.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2653bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20316:405..3057- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCCAGAGGGATCCCTGGTATTGATCGAGGTGACGAAGAAGCACGCCAA
GGTCTTCAAGTCAGTCGCCAAGGGCAGGTGAATTCCAGAAAGATCGCCAC
CACCTGCTACCTTATGCTCTGCTTGACAACCGTAACGCTGCTGGTTTTAT
GGCACAACCCTCCTAAGACTATTCAAAGCTCGATGCTCCCTGAGCAATGG
AAGTAGCGATATTTCAATGGATTGTTTGGTGGATGGCGTCGAGAGCTCTC
TTAAGACGTATCGATCGGTGCCCACTGCTTGGTTGTGGAGCAATCGAGTC
TTCAAAGCCGGTCCCTCAGATGTGCGATGACCCTCTTTTTGCGAAGTTCC
GGGAAACTTTGCTGAGGTTACAAAGCCGGCGCCGGCGGTAGACATGCCGA
AGGGGCATAAAAAACGTGCCCTGCTATGCTCTAGTGATCGCCAGACCATG
CCGCAGTCAACTCCGCGCATTGGGGGTGTTCGAAGTACCTGTTCGTACTG
ACATGCGATGTGGCAAATGTCGCGCTTAGTTTTCTCGTGCTGATGCATGC
CTCTCCCCATCACTCTTGTCTCTTTGATTTCGTTTTTCAATGCACTCTAC
CCGCCCTCGACCCGCCTTCCGTCTGCATTCACTAATGCTGTTTTTTGTTT
GTGAAAAAGCGTGCCTGAAGTTGTGGAGCCAGTTGACGAATGGAGAGTAC
ATGAGACAAGCAATAGGGAGAAGAGGAGCCAGGGACAGGGCAAGCACCAC
GCAGAAAAGGCAAGAGAGAGGGGGGAGGCCGGCCGGATCGTTGAGTTGCC
ATGACGTGGGCGGTGTCGCGGGCAACACCCTGCGTGCCGTCGAGGTTAGG
TGGTTTCGTGTTTTGCGATGACACAGGTTGGTGCCGTTGGCGGGATCGCG
TAGCCAACAGAATCCTTCGAACAACGCTCCTCCTGGATGGTAGCAGCCAA
GGCCCGATGAGAACGGGCAGCTTAGTTCAAGCACGATATGTTCCTGTGAA
ACGTATTTTCCTTCCGATCGTCACTGTATTCCGACATTGGTGCTGCAGCG
TTCATTGGAAATCACACAGTCACTGCGCGACTGTGCTATCCACGCTGCTG
GAAATGACCGTTCGTGAACCTCTGCTTGCAGACGGTGAACCCTTCCCCTA
CCAGCCCCTCGCGAATGTAGGGCTCTTCTCAACTCGGGAGTCATGTCTCG
GACTTTTTGTCCAAGGGATGACCGCCGTGAAACTTGTCATCTTCTCTACC
TATGTGTTACTACCCAGGCCACATGCACGACCCGTATTCTCTCACGGTCT
TCTCTGACGTTCATTGTCCACGCAATGTCCTCATGTACTAACGTGTATTC
GCGTATTTCCTTAATTTCATGGCGAAATCAGGCGGACCCGGTGGCAGAAG
AGGCGTACCTCGTTAAGTTTTATATGGAGGAGCTGTCCGGGGTGATCGAG
AAGGCCGATTCGGTGCTTCTGGTGAGAGCAATGCTGTCGTGAAGCTGTCG
TGAGTTGGCCACCAACCTTCAGGGTACTCGGTATTACAACACACCAAAGG
TTGTTAGGTTTTCGATGTTTGCAACGACCGAGGGTAGCATACGACATGGC
ATTTTGGTTTCAATCCGCAGAAGAAATTTGCACTGCACGGCAGAATAAGT
CGAATGCTTTTATTGTGGTGAAGACGACAGCGGCAAAAACAATTAACCGC
CGTCCGTTGGTTGTCAAACTAGCAACATCTTCACAGAGGACTGCACGGCC
GGTAGAACCACAGATCGAGCTAACACCTGAACGTGTTCCGTTGGGGTTCG
TCCCACTTGGTTACCCGCACATCCTGTAACATGACGTCACAGGTCGGTCA
CGGCAACGCTAAATCCAACATCGCCGAGGTTCTAGCATCGGCTCTTTGCG
AACGCCAGCCTGGCTTGACGGTGAGGAAACCAACCGCTCTCTTTTTCTCT
CTCTGGCCGCCGGTTGGCACCCCTTGAAACACCCGGTGTATGTGTTATCT
TCCCCTTCATTCTTCATTCTGGATGTCAGCCTTCACCATTCGGTGTGAGT
TTATCGACGGGAGTGAGTTAACGAAGGGAAGACGCGGGTGTGTTTTGGTC
CACATCCCTCTTGCGGTGCTTGCTTTCAGTTTCCGCGCGAGAAGCGTTGA
GCAGTCTATTCACTCGTGTTTGTGCATGCTCGTGACTAAGCGCACCCAAC
TCAATTTGCGAGTCTTGTCACGCCGAAGATATTCGAACCCCGAACATGAG
GGTCACGTTTACGAGGTTACGAACTGAATCGTCGTCTTGACCAGCTATTA
GTGCACCGCTTTCACCTGGGATAGGAAGTTCCTCCCGATATCTGCTCATC
CTGTCGGTATCCCACTACTGTTACCCCCCCCCCGCCCGCCGTGATACTGA
TGATATTTTTACCTGCATGTAGTCTTCCGAATTTGGAGGGCCAAAAATGA
AGTATCCTCAGCGAACGTCTGTCCAGGCAAGTTTAACGTTTGTTATCGGT
GATACTTGTTTGGTGTGTTTACCACCTGGGTTCGTGCAGGATAAGATCGA
AGATGTTCTACGGGTGGATGGCAAGCACATCACACAGAACCAGCTCTTGA
AGCTGGGCAGGAGGCATCTTACCCACACCGAGGACCCTAGGAGGCCGACC
TAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20316:405..3057-

>mRNA_Ecto-sp13_S_contig20316.6695.1 ID=mRNA_Ecto-sp13_S_contig20316.6695.1|Name=mRNA_Ecto-sp13_S_contig20316.6695.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20316:405..3057- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCCAGAGGGATCCCTGGTATTGATCGAGGTGACGAAGAAGCACGCCAA
GGTCTTCAAGTCAGTCGCCAAGGGCAGCGTGCCTGAAGTTGTGGAGCCAG
TTGACGAATGGAGAGTACATGAGACAAGCAATAGGGAGAAGAGGAGCCAG
GGACAGGGCAAGCACCACGCAGAAAAGGCAAGAGAGAGGGGGGAGGCCGG
CCGGATCGCGGACCCGGTGGCAGAAGAGGCGTACCTCGTTAAGTTTTATA
TGGAGGAGCTGTCCGGGGTGATCGAGAAGGCCGATTCGGTGCTTCTGGTC
GGTCACGGCAACGCTAAATCCAACATCGCCGAGGTTCTAGCATCGGCTCT
TTGCGAACGCCAGCCTGGCTTGACGGATAAGATCGAAGATGTTCTACGGG
TGGATGGCAAGCACATCACACAGAACCAGCTCTTGAAGCTGGGCAGGAGG
CATCTTACCCACACCGAGGACCCTAGGAGGCCGACCTAA
back to top