mRNA_Ecto-sp13_S_contig20315.6694.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20315.6694.1
Unique NamemRNA_Ecto-sp13_S_contig20315.6694.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20315.6694.1 vs. uniprot
Match: A0A6H5JE62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE62_9PHAE)

HSP 1 Score: 514 bits (1325), Expect = 6.680e-179
Identity = 313/340 (92.06%), Postives = 318/340 (93.53%), Query Frame = 1 
Query:    1 QHQQHPAELRRAAGTVTSAPPLAPRRYVGDGAGMADEGGVGGPKGDGRGKEWTVDLCCKRLSLLHRLTRTAVKSLQAQQARDPDSLDDAQRVKLGRKQTLLTEISELEALRRDLRQKEWERDGASAGPKENKKSRLPPGPFAAANAAGGSHDTRQDQLEEDDGAEYTRDGLRLASPKRRLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLGDADLFSNGGGGGVSAMEALIKSSMDGQDWEKEEGDVGFDSEEGFEDAGGSSKGREEARPMVEAPAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANG 1020
            Q + HPAE+RRAAGTVTSAPPLAPRRYVGDGAGMADEGGVGGPKGDGRGKEWTVDLCCKRLSLLHR  R  VKSLQAQQAR PDSLDDAQRVKLGRKQTLL EISELEALRRDLRQKEWE DGASAGPKENKKSRLPPGPFAAANAAGG HDTRQ Q EEDDGAEYTRDGLRLASPKRRL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    SLGDADLFS+GGGGGV AMEALIK SMDGQDWEKEEGD GF+ EEGFEDAGGSS+GREEARPMVEA AGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANG
Sbjct:  109 QPEPHPAEVRRAAGTVTSAPPLAPRRYVGDGAGMADEGGVGGPKGDGRGKEWTVDLCCKRLSLLHRKLRQ-VKSLQAQQARAPDSLDDAQRVKLGRKQTLLAEISELEALRRDLRQKEWESDGASAGPKENKKSRLPPGPFAAANAAGGGHDTRQHQPEEDDGAEYTRDGLRLASPKRRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----SLGDADLFSDGGGGGVLAMEALIKPSMDGQDWEKEEGDGGFNWEEGFEDAGGSSEGREEARPMVEALAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANG 443
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20315.6694.1 vs. uniprot
Match: D7FYC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYC7_ECTSI)

HSP 1 Score: 465 bits (1197), Expect = 3.060e-162
Identity = 272/307 (88.60%), Postives = 277/307 (90.23%), Query Frame = 1 
Query:  100 MADEGGVGGPKGDGRGKEWTVDLCCKRLSLLHRLTRTAVKSLQAQQARDPDSLDDAQRVKLGRKQTLLTEISELEALRRDLRQKEWERDGASAGPKENKKSRLPPGPFAAANAAGGSHDTRQDQLEEDDGAEYTRDGLRLASPKRRLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLGDADLFSNGGGGGVSAMEALIKSSMDGQDWEKEEGDVGFDSEEGFEDAGGSSKGREEARPMVEAPAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANG 1020
            MADEGGVGGPKGDGRGKEWTVDLCCKRLSLLHR  R  VKSLQAQQARDPDSLDDAQRVKLGRKQTLLTEISELEALRRDLRQKEWE DGASAGPKE KKSRLPPGPFAAANAAGG HDTRQ QLEEDDGAEYTRDGLRLASPKR++QXXXXXXXXXXXXXXXX                   SLGDADLFS+G GGGVSAMEALIKSSMDGQDWEKEEGD GF+ EEGFEDAGGSS+GREEARPMVEAPAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANG
Sbjct:    1 MADEGGVGGPKGDGRGKEWTVDLCCKRLSLLHRKLRQ-VKSLQAQQARDPDSLDDAQRVKLGRKQTLLTEISELEALRRDLRQKEWESDGASAGPKE-KKSRLPPGPFAAANAAGGGHDTRQHQLEEDDGAEYTRDGLRLASPKRQVQXXXXXXXXXXXXXXXXSRPSAGTPGAAAAVPSP--SLGDADLFSDGDGGGVSAMEALIKSSMDGQDWEKEEGDGGFNWEEGFEDAGGSSEGREEARPMVEAPAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANG 303
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20315.6694.1 vs. uniprot
Match: A0A835YSP6_9STRA (S4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSP6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.270e-8
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:  856 GYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANG 1020
            G PK+L  ++S+CRVS + TCE+LV +GRVTVNG V  +   KVD+L D ++ANG
Sbjct:  166 GLPKKLGTVLSYCRVSTRETCEMLVAIGRVTVNGEVVTNADKKVDILNDEIIANG 220
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20315.6694.1 vs. uniprot
Match: A0A4D9D3K9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3K9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.410e-8
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:  778 EEGFEDAGGSSKGREEARPMVEAPAGG-YPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANGE 1023
            E+  E+A     G   A  + +   GG  P+ +  L+ +CR+SDKATCEIL+E+G+V VNGVV  DP   VDL+ D +  +GE
Sbjct:  149 EDFIEEAAEQRAGATSAEDLNDDVVGGRIPRTILKLLVYCRLSDKATCEILLELGKVKVNGVVCDDPVALVDLVKDKIEFDGE 231
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20315.6694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JE62_9PHAE6.680e-17992.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYC7_ECTSI3.060e-16288.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YSP6_9STRA1.270e-854.55S4 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A4D9D3K9_9STRA2.410e-843.37Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20315contigEcto-sp13_S_contig20315:739..3048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1026
Hectar predicted targeting categoryother localisation
Exons4
Cds size1026
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463020.436027-CDS-Ecto-sp13_S_contig20315:738..14611681463020.436027-CDS-Ecto-sp13_S_contig20315:738..1461Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20315 739..1461 -
1681463020.4450212-CDS-Ecto-sp13_S_contig20315:2308..23981681463020.4450212-CDS-Ecto-sp13_S_contig20315:2308..2398Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20315 2309..2398 -
1681463020.4545965-CDS-Ecto-sp13_S_contig20315:2519..25361681463020.4545965-CDS-Ecto-sp13_S_contig20315:2519..2536Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20315 2520..2536 -
1681463020.4630344-CDS-Ecto-sp13_S_contig20315:2852..30481681463020.4630344-CDS-Ecto-sp13_S_contig20315:2852..3048Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20315 2853..3048 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20315.6694.1prot_Ecto-sp13_S_contig20315.6694.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20315 739..3048 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20315.6694.1

>prot_Ecto-sp13_S_contig20315.6694.1 ID=prot_Ecto-sp13_S_contig20315.6694.1|Name=mRNA_Ecto-sp13_S_contig20315.6694.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=342bp
QHQQHPAELRRAAGTVTSAPPLAPRRYVGDGAGMADEGGVGGPKGDGRGK
EWTVDLCCKRLSLLHRLTRTAVKSLQAQQARDPDSLDDAQRVKLGRKQTL
LTEISELEALRRDLRQKEWERDGASAGPKENKKSRLPPGPFAAANAAGGS
HDTRQDQLEEDDGAEYTRDGLRLASPKRRLQQPPPPPPKPEPPASSRPSA
GTPGATAAAAAAVPPPSLGDADLFSNGGGGGVSAMEALIKSSMDGQDWEK
EEGDVGFDSEEGFEDAGGSSKGREEARPMVEAPAGGYPKRLAGLMSFCRV
SDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANGE*
back to top

mRNA from alignment at Ecto-sp13_S_contig20315:739..3048-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20315.6694.1 ID=mRNA_Ecto-sp13_S_contig20315.6694.1|Name=mRNA_Ecto-sp13_S_contig20315.6694.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2310bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20315:739..3048- (Ectocarpus species13 EcNAP12_S_4_19m)
CAACACCAGCAGCATCCTGCGGAGTTACGAAGGGCGGCGGGGACGGTAAC
AAGTGCACCGCCATTAGCGCCTCGGCGGTATGTGGGCGATGGAGCGGGTA
TGGCAGACGAGGGCGGGGTTGGTGGCCCTAAGGGGGACGGGCGGGGGAAG
GAGTGGACGGTGGACCTGTGCTGCAAGCGGTTGTCTTTGCTTCACCGTAA
GCGGGGCGACGGGGAAAGGGAAAACCGTGGGGACGGGGGGGGGGGGGGGG
GGGGGGGGGGGGCAGACAGGAGGACAGACAGATGGACAGACAGAGTCGTA
TGCATCGTGACGGAGAGCGGAGAGGACAGCAAGAGAGAGAGCGAAAGAGA
GAGAGACTACATACAGACGGACGGACAGATAGGTGCAGGCGGACACATCG
GAACGTCAACTCCATTAAGTTGTTGCCATGCCGCCCCCTTCGTGTTGTTC
GTCTTCCTGAGACGCTCCGCGTTCCCTCAAGCGCGAAGCAAGCGGTTTGG
TGTTTTTCGGAGGATTGACCCGAACTGCTGTGGTTTCTGGACCGCTGGAT
GGTATGGACGAAATCACGCGGGCGGCAGCGGACCGTTGTCAGAGGAACCC
AAGATCCTTCCGCTTTTCCCCTCTCATGAAATGTCTGGTCGTCCGGGCAG
GTGAAGAGCCTGCAGGCTCAGCAGGCCAGGGACCCCGATTCTCTCGACGA
CGCGCAAAGAGTCAAGCTCGGGAGGAAGCAGACCCTCCTGGTGAGCAAGA
GGAAAAGAATGGCAGGGATAATTTTTTTTTGCTCGTTGGGGGTGTCCTCA
TAGTCGTGCATGCCGTAGCCGTTAGATCATTGACCGCGCTTCCCTACAAA
AGCCGGGACGGAACACGCCGGGTTTCCACCGGACTAGACCAGCACATCAC
CAAGCGCGAAGCGCCGATTTCTTGTTTTGGGCTGTGGGACGACGCATGAT
CGTGTGTTTGCTTGCGTGCGTTTAGTGGTGCACCCTCCTATGAGAACGAT
TTTGGGCGTGTTTTGTGCAGCCGTCATGCTGCGAGTTGATGCGCGTCGTG
GTTCTGTACATACGGTAGATGACATGATATACTGCTGTAGATATCACCCT
CACCCCCTTGGACAGATGTTTAAAGCTCGAAAACTCTCTTTTCTACACAA
AGAGTTGAGGTGCCGAAATTGGTGGTGCCGGAATCCTCTCGTTCAGATCT
TTCCGAAAACGTTATGTGTGAGTTTTTTATCCTCTTGTGGTCGTCGATTA
CTCGAGCTGTGTGGTATCTTACATCGTGCAACTTACTGCTGTACGGCATC
CACCCTATCTTACGTTATGTTACCTACTGCTATGCGGCATCCATTGGGCG
GGTTGAAGGATGGGTTCACTGCGACGAGGTGGGAGGCCATGCGTCTGGCA
CCCTGGCATGCTAACAGAGATGCTTACCTCAACACCCCCACGCCGTGCTC
GCGCTCGAACTCTCTTCTCATTCTGATACAAAAGCACGTGTTGTACACGT
ACCTACCGGTATGACGTACGCATCGAGACGTGAATTCTGTGTCTAACTCG
ATTCCCCCCCCCCCCCCCTTTCCCACGACATGAAAAGACGGAGATATCGG
AGCTGGAAGCGCTGAGAAGAGACCTGCGCCAGAAGGAATGGGAGAGAGAC
GGCGCCTCAGCGGGGCCTAAGGAGAACAAGAAGTCGCGCCTCCCGCCGGG
CCCCTTTGCCGCAGCCAACGCGGCGGGCGGCAGCCACGACACGCGACAGG
ACCAGCTGGAGGAAGACGATGGAGCCGAGTACACCCGGGACGGCCTCCGG
CTAGCGTCCCCCAAGCGCCGGTTGCAGCAGCCGCCACCGCCGCCGCCCAA
GCCCGAGCCCCCCGCTTCTTCGCGGCCATCCGCGGGGACCCCGGGAGCGA
CGGCGGCGGCGGCGGCGGCGGTGCCCCCGCCCTCGCTGGGGGATGCCGAT
CTGTTTTCCAACGGCGGCGGGGGCGGGGTTTCGGCCATGGAGGCCTTGAT
AAAGTCCTCCATGGACGGCCAGGACTGGGAAAAGGAAGAGGGTGACGTCG
GGTTCGACTCGGAGGAAGGGTTCGAGGATGCGGGGGGGTCTAGCAAAGGG
CGGGAGGAAGCTAGGCCGATGGTGGAGGCTCCCGCGGGGGGTTACCCAAA
GAGGCTGGCCGGGCTGATGAGCTTCTGCCGCGTGTCGGACAAGGCGACTT
GCGAGATCCTGGTGGAGATGGGGAGGGTGACGGTGAACGGGGTGGTGGCG
AGGGACCCCGGGATCAAGGTGGACCTGCTGACGGACATCGTTGTCGCCAA
CGGTGAGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20315:739..3048-

>mRNA_Ecto-sp13_S_contig20315.6694.1 ID=mRNA_Ecto-sp13_S_contig20315.6694.1|Name=mRNA_Ecto-sp13_S_contig20315.6694.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1026bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20315:739..3048- (Ectocarpus species13 EcNAP12_S_4_19m)
CAACACCAGCAGCATCCTGCGGAGTTACGAAGGGCGGCGGGGACGGTAAC
AAGTGCACCGCCATTAGCGCCTCGGCGGTATGTGGGCGATGGAGCGGGTA
TGGCAGACGAGGGCGGGGTTGGTGGCCCTAAGGGGGACGGGCGGGGGAAG
GAGTGGACGGTGGACCTGTGCTGCAAGCGGTTGTCTTTGCTTCACCGATT
GACCCGAACTGCTGTGAAGAGCCTGCAGGCTCAGCAGGCCAGGGACCCCG
ATTCTCTCGACGACGCGCAAAGAGTCAAGCTCGGGAGGAAGCAGACCCTC
CTGACGGAGATATCGGAGCTGGAAGCGCTGAGAAGAGACCTGCGCCAGAA
GGAATGGGAGAGAGACGGCGCCTCAGCGGGGCCTAAGGAGAACAAGAAGT
CGCGCCTCCCGCCGGGCCCCTTTGCCGCAGCCAACGCGGCGGGCGGCAGC
CACGACACGCGACAGGACCAGCTGGAGGAAGACGATGGAGCCGAGTACAC
CCGGGACGGCCTCCGGCTAGCGTCCCCCAAGCGCCGGTTGCAGCAGCCGC
CACCGCCGCCGCCCAAGCCCGAGCCCCCCGCTTCTTCGCGGCCATCCGCG
GGGACCCCGGGAGCGACGGCGGCGGCGGCGGCGGCGGTGCCCCCGCCCTC
GCTGGGGGATGCCGATCTGTTTTCCAACGGCGGCGGGGGCGGGGTTTCGG
CCATGGAGGCCTTGATAAAGTCCTCCATGGACGGCCAGGACTGGGAAAAG
GAAGAGGGTGACGTCGGGTTCGACTCGGAGGAAGGGTTCGAGGATGCGGG
GGGGTCTAGCAAAGGGCGGGAGGAAGCTAGGCCGATGGTGGAGGCTCCCG
CGGGGGGTTACCCAAAGAGGCTGGCCGGGCTGATGAGCTTCTGCCGCGTG
TCGGACAAGGCGACTTGCGAGATCCTGGTGGAGATGGGGAGGGTGACGGT
GAACGGGGTGGTGGCGAGGGACCCCGGGATCAAGGTGGACCTGCTGACGG
ACATCGTTGTCGCCAACGGTGAGTGA
back to top