mRNA_Ecto-sp13_S_contig20310.6692.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig20310.6692.1 vs. uniprot
Match: A0A6H5L3V5_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3V5_9PHAE) HSP 1 Score: 459 bits (1181), Expect = 1.890e-157 Identity = 257/270 (95.19%), Postives = 259/270 (95.93%), Query Frame = 3
Query: 3 DLLLRAIELGETLSPEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRAVAEAEAARFQAAQGAPDRGVFRAPGDGEGELRVDASVSEVPGDFRMRLDEEAGGKGKPSRTFVKVLEHGSYRGRLVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRLAPPSDAACSDTEAPAKQESGXXXXXXXXXXXXXXXXEGVSSQ--GGGGVGRGKRYWGRQEVQPARVAGGKQEVILDVVAPDPFVFVDGELQL 806
DLLLRAIELGETLSPEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRAVAEAEAARFQAAQGAPDRGVFRAPGDG+GELRVDASVSEVPGDFRMRLDEEAGGKGKPSRTFVKVLEHGSYRGRLVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRLAPPSDAACSDTEAPAKQESGXXXXXXXXXXXXXXXX GG G GRGKRYWGRQ+VQPARV GGKQEVILDVVAPDPFVFVDGELQL
Sbjct: 218 DLLLRAIELGETLSPEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRAVAEAEAARFQAAQGAPDRGVFRAPGDGDGELRVDASVSEVPGDFRMRLDEEAGGKGKPSRTFVKVLEHGSYRGRLVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRLAPPSDAACSDTEAPAKQESGXXXXXXXXXXXXXXXXXXXXXXXXGGMGGGRGKRYWGRQKVQPARVTGGKQEVILDVVAPDPFVFVDGELQL 487
BLAST of mRNA_Ecto-sp13_S_contig20310.6692.1 vs. uniprot
Match: A0A7S2GNM4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GNM4_9STRA) HSP 1 Score: 103 bits (256), Expect = 2.020e-23 Identity = 61/104 (58.65%), Postives = 67/104 (64.42%), Query Frame = 3
Query: 267 VPGDFRMRLDEEAGGKGKPSRTFVKVLEHGSYRGRLVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDAD--------HTIPRMCLHAQSLTL----RLAP 542
VPGDFRMR G GKPSRT V+V+ HG Y+G+ VTKV++ P TGRRHQLRLH L GHPILGD TYG A PRMCLHA L L RLAP
Sbjct: 1 VPGDFRMRTV-HGSGVGKPSRTEVRVVAHGLYQGQPVTKVVLHPITGRRHQLRLHLLEAGHPILGDATYGPAACPSDLGEVDEPPRMCLHAHRLYLPFKHRLAP 103
BLAST of mRNA_Ecto-sp13_S_contig20310.6692.1 vs. uniprot
Match: W2NEC5_PHYPR (PseudoU_synth_2 domain-containing protein n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NEC5_PHYPR) HSP 1 Score: 95.9 bits (237), Expect = 1.450e-18 Identity = 70/175 (40.00%), Postives = 87/175 (49.71%), Query Frame = 3
Query: 39 LSPEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRAVAEAEAARFQAAQGAPDRGVFRAPGDGEGELRV----DASVSEV---PGDFRMRLDEEAGGKGKPSRTFVKVLEHGSYRGRLVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRLAP 542
L+P +LAF+K++W D+ K + AKADK R + E Q + + + + E V DA + E G FRM + EA K S T VL H Y G VTKVL+RP GRRHQLRLH H G PI GD TYG + PRM LHA + LR P
Sbjct: 145 LTPAELAFTKMTWHDLT--KEEKDAYTEKAKADKQRFLKELSEFLSQEKVRLARKRKYESLDREDSEEPVAYIFDAPIIEPHRSTGVFRMLVGTEADAAAKQSTTICFVLGHAMYEGEPVTKVLLRPLNGRRHQLRLHMAHHGFPIAGDVTYGSQEDEAPRMMLHAWRIWLRGRP 317
BLAST of mRNA_Ecto-sp13_S_contig20310.6692.1 vs. uniprot
Match: A0A0W8DGS8_PHYNI (RNA pseudouridylate synthase domain-containing protein 1 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DGS8_PHYNI) HSP 1 Score: 95.5 bits (236), Expect = 4.620e-18 Identity = 70/175 (40.00%), Postives = 87/175 (49.71%), Query Frame = 3
Query: 39 LSPEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRAVAEAEAARFQAAQGAPDRGVFRAPGDGEGELRV----DASVSEV---PGDFRMRLDEEAGGKGKPSRTFVKVLEHGSYRGRLVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRLAP 542
L+P +LAF+K++W D+ K + AKADK R + E Q + + + + E V DA + E G FRM + EA K S T VL H Y G VTKVL+RP GRRHQLRLH H G PI GD TYG + PRM LHA + LR P
Sbjct: 259 LTPAELAFTKMTWHDLT--KEEKDAYTEKAKADKQRFLKELSEFLSQEKVRLARKRNYESLDREDSEEPVAYIFDAPIIEPHRSTGVFRMLVGTEADAAAKQSTTICFVLGHAMYEGEPVTKVLLRPLNGRRHQLRLHMAHHGFPIAGDVTYGSQEDEAPRMMLHAWRIWLRGRP 431
BLAST of mRNA_Ecto-sp13_S_contig20310.6692.1 vs. uniprot
Match: M4BT04_HYAAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BT04_HYAAE) HSP 1 Score: 94.7 bits (234), Expect = 4.940e-18 Identity = 66/176 (37.50%), Postives = 87/176 (49.43%), Query Frame = 3
Query: 39 LSPEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRAVAEAEAARFQAAQGAPDRGVFRAPGDGEGELRVDASVSEVP--------GDFRMRLDEEAGGKGKPSRTFVKVLEHGSYRGRLVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRLAP 542
L+P +LAF+K++W D+ +K + AK DK R + E A + + + + + A V + P FRM++ E K S T VL H YRG+ VTKVL+RP GRRHQLRLH H G PI GD TYG + PRM LHA + LR P
Sbjct: 181 LTPTELAFTKMAWIDLAKEK--KDAYTEKAKTDKQRFLCELNAFLSKEKARLACQRAYECRDNSDKVDEPVAYVFDAPIVEPHRSRKVFRMQVGSETDTSAKQSTTVAFVLGHAMYRGQPVTKVLLRPLNGRRHQLRLHLAHHGFPIAGDVTYGSQEDEAPRMMLHAWRIWLRERP 354
BLAST of mRNA_Ecto-sp13_S_contig20310.6692.1 vs. uniprot
Match: W2Q6J3_PHYPN (PseudoU_synth_2 domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2Q6J3_PHYPN) HSP 1 Score: 95.5 bits (236), Expect = 5.000e-18 Identity = 70/175 (40.00%), Postives = 87/175 (49.71%), Query Frame = 3
Query: 39 LSPEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRAVAEAEAARFQAAQGAPDRGVFRAPGDGEGELRV----DASVSEV---PGDFRMRLDEEAGGKGKPSRTFVKVLEHGSYRGRLVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRLAP 542
L+P +LAF+K++W D+ K + AKADK R + E Q + + + + E V DA + E G FRM + EA K S T VL H Y G VTKVL+RP GRRHQLRLH H G PI GD TYG + PRM LHA + LR P
Sbjct: 278 LTPAELAFTKMTWHDLT--KEEKDAYTEKAKADKQRFLKELSEFLSQEKVRLARKRNYESLDREDSEEPVAYIFDAPIIEPHRSTGVFRMLVGTEADAAAKQSTTICFVLGHAMYEGEPVTKVLLRPLNGRRHQLRLHMAHHGFPIAGDVTYGSQEDEAPRMMLHAWRIWLRGRP 450
BLAST of mRNA_Ecto-sp13_S_contig20310.6692.1 vs. uniprot
Match: A0A6G0XCR0_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XCR0_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 7.730e-18 Identity = 69/191 (36.13%), Postives = 92/191 (48.17%), Query Frame = 3
Query: 30 GETLSPEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRAVAEAEAAR-FQAAQGAPDRGVFRAP---------------------GDGEGELRVDASVSEVPGDFRMRLDEEAGGKGKPSRTFVKVLEHGSYRGRLVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRL 536
G TLSPE++ F + W D+ D + +H A ADK+R A+ +A Q Q D + +P + G + D + F+M + GK S T VL HG + G+ VTKVL+RP +GRRHQLRLH H G+PI+GD TYG D PRM LHA L L+
Sbjct: 233 GATLSPEEVDFLRKKWHDLPDD--VQQTYHERAAADKLRFDAQVKALECHQLPQVRYDIPLQSSPLRPRSMSELTLPTPKRSRLVTTEPMGYIFDDPIATSTTNSFQMEISPN----GKVSTTLAFVLGHGLFDGQPVTKVLLRPLSGRRHQLRLHLSHCGYPIVGDVTYGSEDDLAPRMMLHAWKLHLKF 417
BLAST of mRNA_Ecto-sp13_S_contig20310.6692.1 vs. uniprot
Match: A0A5D6YT03_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YT03_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 8.060e-18 Identity = 77/193 (39.90%), Postives = 97/193 (50.26%), Query Frame = 3
Query: 30 GETLSPEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRAVAEAEA----ARFQAAQGAPDRGVFRAPGDGEGELRVDAS------------VSEVPGD-FRMRLDEEAGGKGKPSRTFVKVLEHGSYR----GRLVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRLAPP 545
GE L+ ++ A+ L W D+ +A PF + DK R VAE A R Q A+ V + G E + AS ++E G+ FRM++ +A GK S T VL HG+ VTKVL+RP TGRRHQLRLH H G PI+GD TYGD D RM LHA L L +APP
Sbjct: 14 GEPLTADEQAYVALKWRDLP--RAQQEPFKQHGQRDKERFVAELTAFLDSEREQVARKRKYESVETSSGGAEAGVAAAASAPEPVAYVFEDRIAEPSGEGFRMQIG-DARRPGKASSTLAFVLGHGTRAINGVDEPVTKVLLRPLTGRRHQLRLHLAHNGFPIVGDVTYGDEDDDAQRMLLHAWKLWL-VAPP 202
BLAST of mRNA_Ecto-sp13_S_contig20310.6692.1 vs. uniprot
Match: A0A833WT58_PHYIN (RNA pseudouridylate synthase n=3 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WT58_PHYIN) HSP 1 Score: 94.7 bits (234), Expect = 9.500e-18 Identity = 74/179 (41.34%), Postives = 92/179 (51.40%), Query Frame = 3
Query: 39 LSPEDLAFSKLSWGDI-KFDKAASRPFHSAAKADKIRAVAE-AEAARFQAAQGAPDRGVFRAPGDGEGELR------VDASVSEV---PGDFRMRLDEEAGGKGKPSRTFVKVLEHGSYRGRLVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRLAP 542
L+P +LAF+K++W D+ K +K A + AKADK R + E +E + + A R G+ E DA V E G FRM + E K S T VL H Y+G VTKVL+RP GRRHQLRLH H G PI GD TYG + PRM LHA + LR P
Sbjct: 284 LTPAELAFTKMTWHDLTKEEKGA---YTEKAKADKRRFLKEFSEFLNQEKIRLARKRKYESFDGEDSEEANEPVAYVFDAPVIEPHRSTGVFRMLVGTETDTAAKQSTTMCFVLGHAIYKGEPVTKVLLRPLNGRRHQLRLHMAHHGFPIAGDVTYGSQEDEAPRMMLHAWRIWLRGRP 459
BLAST of mRNA_Ecto-sp13_S_contig20310.6692.1 vs. uniprot
Match: A0A7S2RMN8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RMN8_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.120e-17 Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = 3
Query: 240 LRVDASVSEVPGDFRMRLDEEAGGKGKPSRTFVKVLEHGSYRGRLVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYG 476
L V ++S +P DFRMR+D +G+ ++T V VLEHGS G VTKVL+RP GRRHQLRLH LH+G+PILGD TYG
Sbjct: 180 LEVSGAISAIPDDFRMRIDPS---EGREAKTQVVVLEHGSLYGVDVTKVLLRPIQGRRHQLRLHCLHLGYPILGDATYG 255 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20310.6692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig20310.6692.1 >prot_Ecto-sp13_S_contig20310.6692.1 ID=prot_Ecto-sp13_S_contig20310.6692.1|Name=mRNA_Ecto-sp13_S_contig20310.6692.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=175bp MRLDEEAGGKGKPSRTFVKVLEHGSYRGRLVTKVLMRPHTGRRHQLRLHAback to top mRNA from alignment at Ecto-sp13_S_contig20310:851..2394+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig20310.6692.1 ID=mRNA_Ecto-sp13_S_contig20310.6692.1|Name=mRNA_Ecto-sp13_S_contig20310.6692.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1544bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20310:851..2394+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20310:851..2394+ >mRNA_Ecto-sp13_S_contig20310.6692.1 ID=mRNA_Ecto-sp13_S_contig20310.6692.1|Name=mRNA_Ecto-sp13_S_contig20310.6692.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20310:851..2394+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |