mRNA_Ecto-sp13_S_contig2031.6691.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2031.6691.1
Unique NamemRNA_Ecto-sp13_S_contig2031.6691.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig2031.6691.1 vs. uniprot
Match: D7G218_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G218_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 2.440e-25
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = -3 
Query:    1 DDATLSQFDTLVVNAGAHLRSGALEAYGSMMKSASESLTSSMRRLHGDNAILVVRNTVPGHG 186
            DDATLSQFDTLVVNAGAH RSG ++AYG MMKSASESLTSSMRRLHGDNAILVVRNTVPGHG
Sbjct:   75 DDATLSQFDTLVVNAGAHRRSGGMKAYGLMMKSASESLTSSMRRLHGDNAILVVRNTVPGHG 136
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BLAST of mRNA_Ecto-sp13_S_contig2031.6691.1 vs. uniprot
Match: A0A6H5JU41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU41_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.570e-24
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = -3 
Query:    1 FLEDDATLSQFDTLVVNAGAHLRSGALEAYGSMMKSASESLTSSMRRLHGDNAILVVRNTVPGHG 195
            F+ DDATL QFDTLVVNAGAH RSG LEAYGSMMK+ASE LTSSMRRLHGDNAILVVRNTVPGHG
Sbjct:  248 FIADDATLIQFDTLVVNAGAHRRSGGLEAYGSMMKNASEILTSSMRRLHGDNAILVVRNTVPGHG 312
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BLAST of mRNA_Ecto-sp13_S_contig2031.6691.1 vs. uniprot
Match: A0A6H5J7J3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J3_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 8.090e-24
Identity = 56/61 (91.80%), Postives = 60/61 (98.36%), Query Frame = -3 
Query:    1 DATLSQFDTLVVNAGAHLRSGALEAYGSMMKSASESLTSSMRRLHGDNAILVVRNTVPGHG 183
            DATL+QFDTLVVN+GAHLRSG LEAYGSMMK+ASESLT+SMRRLHGDNAILVVRNTVPGHG
Sbjct:  294 DATLTQFDTLVVNSGAHLRSGGLEAYGSMMKNASESLTTSMRRLHGDNAILVVRNTVPGHG 354
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BLAST of mRNA_Ecto-sp13_S_contig2031.6691.1 vs. uniprot
Match: D8LHR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHR2_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 3.540e-21
Identity = 59/96 (61.46%), Postives = 71/96 (73.96%), Query Frame = -3 
Query:    1 SYYCNDATSTCVE*----RCDVNWLS----SFLEDDATLSQFDTLVVNAGAHLRSGALEAYGSMMKSASESLTSSMRRLHGDNAILVVRNTVPGHG 264
            S+Y ND   T ++     RC+   +S        DDATLSQ+DTL+VNAGAH + G +EAYGSM+K+A ESLT+SMRRLHGDNAILVVRNTVPGHG
Sbjct:  241 SWYRNDFLDTRLDGFDTPRCEEPDISISQCMVFADDATLSQYDTLLVNAGAHRQLGGVEAYGSMIKTAGESLTASMRRLHGDNAILVVRNTVPGHG 336
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BLAST of mRNA_Ecto-sp13_S_contig2031.6691.1 vs. uniprot
Match: A0A6H5J9Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Y7_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.310e-21
Identity = 58/95 (61.05%), Postives = 74/95 (77.89%), Query Frame = -3 
Query:    1 SYYCNDATSTCVE*----RC---DVNWLSSFLEDDATLSQFDTLVVNAGAHLRSGALEAYGSMMKSASESLTSSMRRLHGDNAILVVRNTVPGHG 264
            S+Y ND   T ++     RC   D++ +S  +  DATLSQ+DTL+VNAGAH + G +EAYGSM+K+A+ESLT+SMRRLHGD+AILVVRNTVPGHG
Sbjct:  120 SWYRNDYLDTRLDGFDTPRCEEPDIS-ISQCMTYDATLSQYDTLLVNAGAHRQLGGVEAYGSMIKTAAESLTASMRRLHGDSAILVVRNTVPGHG 213
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BLAST of mRNA_Ecto-sp13_S_contig2031.6691.1 vs. uniprot
Match: A0A6H5JZZ9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ9_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 6.400e-12
Identity = 36/62 (58.06%), Postives = 51/62 (82.26%), Query Frame = -3 
Query:    1 DDATLSQFDTLVVNAGAHLRSGALEAYGSMMKSASESLTSSMRRLHGDNAILVVRNTVPGHG 186
            DD TL ++DTL++N+GAH RS  L+ Y   M++AS+ +T+SM+RLHGD+A+L+VRNT PGHG
Sbjct:  217 DDDTLKEYDTLIINSGAHPRS--LDEYREAMETASKKMTASMKRLHGDDALLIVRNTPPGHG 276
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BLAST of mRNA_Ecto-sp13_S_contig2031.6691.1 vs. uniprot
Match: D7FL51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL51_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 8.010e-12
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = -3 
Query:    1 DDATLSQFDTLVVNAGAHLRSGALEAYGSMMKSASESLTSSMRRLHGDNAILVVRNTVPGHG 186
            DD TL ++DTL++N+GAH RS  L+ Y   M++AS+ LT SM+RLHGD+A+L+VRNT PGHG
Sbjct:  204 DDDTLKEYDTLIINSGAHPRS--LDEYRDSMETASKELTVSMKRLHGDDALLIVRNTPPGHG 263
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BLAST of mRNA_Ecto-sp13_S_contig2031.6691.1 vs. uniprot
Match: D7FL53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL53_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 8.540e-12
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = -3 
Query:    1 DDATLSQFDTLVVNAGAHLRSGALEAYGSMMKSASESLTSSMRRLHGDNAILVVRNTVPGHG 186
            DD TL ++DTL++N+GAH RS  L+ Y   M +AS+ LT+SM+RLHGD+A+L+VRNT PGHG
Sbjct:  216 DDYTLEEYDTLIINSGAHPRS--LDEYRDSMGTASKELTASMKRLHGDDALLIVRNTPPGHG 275
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BLAST of mRNA_Ecto-sp13_S_contig2031.6691.1 vs. uniprot
Match: A0A6H5KFW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW9_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.560e-10
Identity = 40/61 (65.57%), Postives = 50/61 (81.97%), Query Frame = -3 
Query:    4 DATLSQFDTLVVNAGAHLRSGALEAYGSMMKSASESLTSSMRRLHG-DNAILVVRNTVPGH 183
            DATL +FDTLVVN+GAH R  A   +G  M++++++LTSSM+RLHG D AILVVRNTVPGH
Sbjct:  250 DATLREFDTLVVNSGAHPRPAA--EFGREMEASAKALTSSMKRLHGEDKAILVVRNTVPGH 308
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2031.6691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G218_ECTSI2.440e-2591.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU41_9PHAE1.570e-2489.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7J3_9PHAE8.090e-2491.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHR2_ECTSI3.540e-2161.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9Y7_9PHAE5.310e-2161.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZZ9_9PHAE6.400e-1258.06Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FL51_ECTSI8.010e-1259.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FL53_ECTSI8.540e-1259.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFW9_9PHAE2.560e-1065.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2031contigEcto-sp13_S_contig2031:8838..9865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1028
Hectar predicted targeting categoryother localisation
Exons1
Cds size612
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463019.991206-UTR-Ecto-sp13_S_contig2031:8837..91571681463019.991206-UTR-Ecto-sp13_S_contig2031:8837..9157Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2031 8838..9157 +
1681463020.0244308-UTR-Ecto-sp13_S_contig2031:9769..98651681463020.0244308-UTR-Ecto-sp13_S_contig2031:9769..9865Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2031 9770..9865 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463020.0094054-CDS-Ecto-sp13_S_contig2031:9157..97691681463020.0094054-CDS-Ecto-sp13_S_contig2031:9157..9769Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2031 9158..9769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2031.6691.1prot_Ecto-sp13_S_contig2031.6691.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2031 9158..9769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2031.6691.1

>prot_Ecto-sp13_S_contig2031.6691.1 ID=prot_Ecto-sp13_S_contig2031.6691.1|Name=mRNA_Ecto-sp13_S_contig2031.6691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=204bp
MPLRCSAPLGCHFRSKRMHTTPETESQALRTKNEEVSVLDIKTCSLISLH
QQNGLERLILGLQYVYNAVPDRLEDCRDNFVSVDSADRPGNQTYHGAKHG
GLKFWQENAIRVRSVTILGFGQGWVDRLEFLQNCLILPRGSAQKCRCGTR
ECARKQGTLGVPDRTNAKRVPLWLRSKRQSPRRSHLGVPSDTGIRRYPTI
LQL*
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mRNA from alignment at Ecto-sp13_S_contig2031:8838..9865+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2031.6691.1 ID=mRNA_Ecto-sp13_S_contig2031.6691.1|Name=mRNA_Ecto-sp13_S_contig2031.6691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1028bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2031:8838..9865+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCATGACCCGGGACGGTGTTCCTGACCACCAAGATGGCGTTGTCCCCGT
GTAACCGTCTCATGGACGAGGTCAGGCTCTCGCTAGCGCTCTTCATCATC
GACCCGTACGCCTCCAACGCCCCCGATCGAAGGTGCGCCCCAGCGTTCAC
GACGAGAGTGTCGAACTGGCTCAAGGTAGCATCATCTTCGAGAAAAGATG
AAAGCCAGTTGACATCACATCGTTACTCGACGCAGGTTGACGTTGCATCG
TTACAATAGTAGGATCGACTTGTCGAACTGGTTCAGGGCAGAAGTCACAC
GCGAGTGCAAAATATCTTTGATGCCACTACGTTGTTCAGCACCGTTGGGT
TGCCATTTTCGCTCGAAACGCATGCATACCACACCTGAAACTGAGAGCCA
GGCACTACGTACAAAGAATGAAGAAGTCTCTGTTCTCGACATCAAAACAT
GCAGCCTCATTTCACTCCATCAGCAGAACGGATTGGAAAGACTCATTCTT
GGCCTACAGTACGTCTACAACGCTGTCCCGGACAGACTAGAGGATTGCCG
GGACAACTTTGTTTCGGTCGACTCTGCAGACAGACCCGGGAATCAAACGT
ACCATGGTGCAAAACACGGAGGGTTAAAATTTTGGCAAGAAAATGCGATT
CGTGTTCGTTCGGTGACGATTCTCGGTTTCGGCCAGGGATGGGTAGACAG
ACTGGAATTCCTCCAAAATTGTTTGATTCTGCCGCGCGGGAGCGCGCAAA
AGTGTCGTTGTGGCACCCGTGAATGTGCGCGAAAGCAAGGCACGTTGGGG
GTTCCCGACCGCACGAATGCTAAACGCGTACCGTTGTGGCTCCGATCTAA
GAGGCAAAGCCCTCGACGCTCTCATCTCGGGGTCCCCTCCGATACCGGAA
TAAGACGGTACCCAACTATACTACAACTGTAGTGGGTCGACTTCATGACA
ACCCATTTCGACCCTCTTATGTCGGAGCACCTCTTACTAGGTACCCGTCT
TTCACATCGGAGCCACGACTGACGGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2031:8838..9865+

>mRNA_Ecto-sp13_S_contig2031.6691.1 ID=mRNA_Ecto-sp13_S_contig2031.6691.1|Name=mRNA_Ecto-sp13_S_contig2031.6691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2031:8838..9865+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCACTACGTTGTTCAGCACCGTTGGGTTGCCATTTTCGCTCGAAACG
CATGCATACCACACCTGAAACTGAGAGCCAGGCACTACGTACAAAGAATG
AAGAAGTCTCTGTTCTCGACATCAAAACATGCAGCCTCATTTCACTCCAT
CAGCAGAACGGATTGGAAAGACTCATTCTTGGCCTACAGTACGTCTACAA
CGCTGTCCCGGACAGACTAGAGGATTGCCGGGACAACTTTGTTTCGGTCG
ACTCTGCAGACAGACCCGGGAATCAAACGTACCATGGTGCAAAACACGGA
GGGTTAAAATTTTGGCAAGAAAATGCGATTCGTGTTCGTTCGGTGACGAT
TCTCGGTTTCGGCCAGGGATGGGTAGACAGACTGGAATTCCTCCAAAATT
GTTTGATTCTGCCGCGCGGGAGCGCGCAAAAGTGTCGTTGTGGCACCCGT
GAATGTGCGCGAAAGCAAGGCACGTTGGGGGTTCCCGACCGCACGAATGC
TAAACGCGTACCGTTGTGGCTCCGATCTAAGAGGCAAAGCCCTCGACGCT
CTCATCTCGGGGTCCCCTCCGATACCGGAATAAGACGGTACCCAACTATA
CTACAACTGTAG
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