mRNA_Ecto-sp13_S_contig20305.6687.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20305.6687.1
Unique NamemRNA_Ecto-sp13_S_contig20305.6687.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20305.6687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20305contigEcto-sp13_S_contig20305:812..3146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size639
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_000220.1
Cds size639
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463019.8737743-CDS-Ecto-sp13_S_contig20305:811..10421681463019.8737743-CDS-Ecto-sp13_S_contig20305:811..1042Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20305 812..1042 -
1681463019.8831573-CDS-Ecto-sp13_S_contig20305:1566..16811681463019.8831573-CDS-Ecto-sp13_S_contig20305:1566..1681Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20305 1567..1681 -
1681463019.8932076-CDS-Ecto-sp13_S_contig20305:2257..23831681463019.8932076-CDS-Ecto-sp13_S_contig20305:2257..2383Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20305 2258..2383 -
1681463019.9035375-CDS-Ecto-sp13_S_contig20305:2979..31461681463019.9035375-CDS-Ecto-sp13_S_contig20305:2979..3146Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20305 2980..3146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20305.6687.1prot_Ecto-sp13_S_contig20305.6687.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20305 812..3146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20305.6687.1

>prot_Ecto-sp13_S_contig20305.6687.1 ID=prot_Ecto-sp13_S_contig20305.6687.1|Name=mRNA_Ecto-sp13_S_contig20305.6687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp
ERARERQKREEEEWHITGERAFRPKERSYPHGGGVDAAACKGFLGSAERA
MHLYDRGKAHTDEMSAVLAALEQRNAALAQACHEYEDKHSLHLSPDRVKG
GKWEVGTKELRLFVEAAKRMTSVQRHTFTQVLAPYRDKSDGYIGPVEPLV
VSLQRAKNASIEQAVSGAIFSSGSPSSSVSGGGGGKSAGVGRFSRGLRAV
AVRPPPSATAST*
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mRNA from alignment at Ecto-sp13_S_contig20305:812..3146-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20305.6687.1 ID=mRNA_Ecto-sp13_S_contig20305.6687.1|Name=mRNA_Ecto-sp13_S_contig20305.6687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2335bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20305:812..3146- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAGGGCGCGGGAGAGGCAGAAGCGGGAGGAAGAGGAGTGGCACATCAC
CGGTGAACGGGCCTTCCGACCGAAAGAACGGAGTTACCCGCATGGTGGCG
GGGTGGATGCCGCTGCTTGCAAGGGTTTCTTGGGCTCGGCCGAGCGAGCG
ATGCATCTCTACGACAGGTGGGCAGGTCGAATCGCCCTTGTCTAAGGCAA
ACAATGTGCGTGGGCACTGAATTTACCCTCATCGTTGATTGATTCACAAA
CTTTGGCACCAATGCCATCCAACCGCCACGTCGCACAAGCTAGTTCTCGC
CGGTTGAGAGGTGAGCATTCGGAATGGGCCAAAACCTCATGGTTATGAAC
GTTCACTCTGGAATGACCCGCGTGCGATATGCCACATGCGTTGAGTGCCC
AGGGCACAACGGTCTGTAACTACGTGCGTACAGCAAATCTGGTGGGATCG
GACTCCCTTACTGCCTCGAGGGAGATTCCTCACTTACAAGAACGATGTCG
GAGAAGTTACCTCTCCCACTTTCGCCACGGAGGCTTTTCCCGTCTGTGGT
TGATTGCTCTATATCTGTGCCCAAACTGTGAATCAGAGTCGAAGCGAGGA
GCGACTATGTGTAAAACATTGCCTTTCTCTGATTCTCATTTTTTTTCCCC
TAACTTGAGTGTGCGGGCACTGCAAGCGGGAGAAAACCATCCAATACCTA
ATGTCTAGCTTGTTTACTTCGCCGTTTGCCGTCTTACGTTGATCGTCTTT
GTCATCGCTCTAGAGGAAAGGCTCATACAGACGAGATGTCGGCGGTGCTG
GCTGCTCTCGAGCAAAGAAACGCGGCACTTGCACAAGCCTGTCATGAATA
CGAGGACAAGCACTCATTGCATCTTAGCCCGGACAGAGTGTGCGTTCATG
ACCAGCCCACTACCATAATAATGTGTATCGCTTGGTAAACGCGGTGTGTA
TGGATAACAGAGTCACACCATGGGTAAGCAAATAGTCAATATATATAATT
CATTTTCTGTTGCCTCTATGAAATACCTACCATATTCGGGATTCCTCAGG
AACAGACCCTTGGAATACAATCGTTCACGTGTGAAACGTTGCCGTTCATC
CCTCGAATCCTGTGGAATTGCATTCTTTTGTCACGCATTCAAACGTTATT
ATTTATGTCATACCTTGAGTGAGATGTCGATTGCTTCACACTGCTGCTGG
GGTATCGCGAAAATAAGTTCTGTCCCATTTCTTAGGTTCACTTTCTTTGT
ATGGTGATGAGTACCCCCGGTGAAGGGAAGGTATAAAATGACGGTAGTAG
ATCGTTCTGTGCAAGCTGCCCGATCTGTTTGTGCTTTCGTGTCACGATGT
TCCGCGTTGAAAGTGGGGGACATCCTACCACATATTTCGTTGGAATGGTA
CGTCAAGTTTGCTGATATTTCTGTCTTTCGCTTTCTCCGGTACATGCTTC
CTACGGCGTCGACAGGAAAGGTGGAAAGTGGGAGGTCGGCACGAAGGAGC
TGCGGCTCTTCGTAGAGGCCGCGAAGAGAATGACTTCTGTTCAACGCCAC
ACGTTCACCCAAGTCTTAGCCCCATACCGCGTAAGGGTTTCAACGTACAC
GTGTCATTGGTGTGTATACCAAGGGAATTGCCACACTACTGTAGGGAATC
GGTATCAATGTTAAGAACGAAGTGCAGCGCGTATACATCGGTATCGCCAG
TGCAAGAAAAAAATAAACTGTGGAGGATAGATCACACGGCAGAGTTGGGA
AGAGCCCCGTTTTTCTTGTTCTCCGAGAGGTTTCCCAGTCAGCGGAAAGG
AGAGTCGAGCGACCATCGAGAAAACGTTCGTGGCTGTCACTACATGTAAT
TTTCCGTTAACTTGATGTGGAGAACATCGGTCCAAGATACTCCGTACAGT
GTGAACCAGCGCGGAGGATGGGAGTATACAGAAGTGGACTGCATCGTGCT
AACGGAAACGACAGCAGAACTTAGTTCAGTGCTTCCAGTCGTAGCTTATG
AGTGAAGCCTACCCGACACTTCGGAAACGAACATCGAATTTCATTGGCGT
CATCCACAATAATAATCGAAAAACGGCCTCTCGATATTTGTTCCGCCCCC
GCAGGACAAGTCTGATGGTTACATCGGCCCCGTGGAGCCACTAGTGGTAA
GCCTCCAACGAGCGAAGAACGCTTCGATCGAGCAAGCGGTCTCCGGAGCG
ATATTTTCTTCGGGATCGCCATCTTCTTCCGTCAGCGGAGGAGGTGGTGG
AAAATCTGCTGGGGTTGGGAGGTTTTCGCGCGGACTTCGAGCCGTTGCAG
TGCGACCACCTCCGAGCGCTACGGCTTCAACGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20305:812..3146-

>mRNA_Ecto-sp13_S_contig20305.6687.1 ID=mRNA_Ecto-sp13_S_contig20305.6687.1|Name=mRNA_Ecto-sp13_S_contig20305.6687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20305:812..3146- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAGGGCGCGGGAGAGGCAGAAGCGGGAGGAAGAGGAGTGGCACATCAC
CGGTGAACGGGCCTTCCGACCGAAAGAACGGAGTTACCCGCATGGTGGCG
GGGTGGATGCCGCTGCTTGCAAGGGTTTCTTGGGCTCGGCCGAGCGAGCG
ATGCATCTCTACGACAGAGGAAAGGCTCATACAGACGAGATGTCGGCGGT
GCTGGCTGCTCTCGAGCAAAGAAACGCGGCACTTGCACAAGCCTGTCATG
AATACGAGGACAAGCACTCATTGCATCTTAGCCCGGACAGAGTGAAAGGT
GGAAAGTGGGAGGTCGGCACGAAGGAGCTGCGGCTCTTCGTAGAGGCCGC
GAAGAGAATGACTTCTGTTCAACGCCACACGTTCACCCAAGTCTTAGCCC
CATACCGCGACAAGTCTGATGGTTACATCGGCCCCGTGGAGCCACTAGTG
GTAAGCCTCCAACGAGCGAAGAACGCTTCGATCGAGCAAGCGGTCTCCGG
AGCGATATTTTCTTCGGGATCGCCATCTTCTTCCGTCAGCGGAGGAGGTG
GTGGAAAATCTGCTGGGGTTGGGAGGTTTTCGCGCGGACTTCGAGCCGTT
GCAGTGCGACCACCTCCGAGCGCTACGGCTTCAACGTAG
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