mRNA_Ecto-sp13_S_contig20304.6686.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20304.6686.1
Unique NamemRNA_Ecto-sp13_S_contig20304.6686.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20304.6686.1 vs. uniprot
Match: A0A482SLQ7_9ARCH (GTP-binding protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SLQ7_9ARCH)

HSP 1 Score: 94.4 bits (233), Expect = 7.110e-21
Identity = 52/80 (65.00%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    1 EDEQKRGITMHSSAISLLYKAQPKQPRPAP--GTRGAGADKANSFLINLIDSPGHIDFSSDVSTATRLCDCALVVVDVLE 234
            E+EQKRGITMHSSAI+LLY+ + K    A   GT+         FLINL+D PGHIDFSSDVSTA RLCD AL+VVDVLE
Sbjct:   62 EEEQKRGITMHSSAIALLYRMEEKGAEAAKEIGTK-------EDFLINLVDCPGHIDFSSDVSTAARLCDGALIVVDVLE 134
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20304.6686.1 vs. uniprot
Match: A0A7S3HQ28_9STRA (Hypothetical protein n=4 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQ28_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 9.410e-21
Identity = 52/71 (73.24%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:   22 ITMHSSAISLLYKAQPKQPRPAPGTRGAGADKANSFLINLIDSPGHIDFSSDVSTATRLCDCALVVVDVLE 234
            ITMHSSAISLL++ + K    A    GA A KA  FLINLIDSPGHIDFSSDVSTATRLCD AL+VVDVLE
Sbjct:    1 ITMHSSAISLLFRNEEKG---ADTAAGAEAPKAEEFLINLIDSPGHIDFSSDVSTATRLCDGALLVVDVLE 68
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20304.6686.1 vs. uniprot
Match: A0A0R3WLW5_HYDTA (Tr-type G domain-containing protein n=2 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3WLW5_HYDTA)

HSP 1 Score: 94.0 bits (232), Expect = 1.290e-20
Identity = 49/78 (62.82%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:    1 EDEQKRGITMHSSAISLLYKAQPKQPRPAPGTRGAGADKANSFLINLIDSPGHIDFSSDVSTATRLCDCALVVVDVLE 234
            E EQ RGITM SSA++L Y    K  R    +  A AD  NS+LINLIDSPGH+DF+SDVSTA RLCDCA++VVDV E
Sbjct:    8 EAEQMRGITMKSSAVALFYNPTLKLSRQI--SPQAAADDPNSYLINLIDSPGHVDFASDVSTAVRLCDCAMIVVDVAE 83
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20304.6686.1 vs. uniprot
Match: A0A316YYM7_9BASI (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YYM7_9BASI)

HSP 1 Score: 92.0 bits (227), Expect = 6.090e-20
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:    1 EDEQKRGITMHSSAISLLYKAQPKQPRPAPGTRGAGADKANSFLINLIDSPGHIDFSSDVSTATRLCDCALVVVDVLE 234
            EDEQ+RGITM SSA+SL +K +  QP   PG       +   F+INLID+PGH+DFSS+VSTA+RLCD AL++VDV+E
Sbjct:   57 EDEQERGITMESSAVSLSFKLRQMQPDGKPG-------QIQDFMINLIDTPGHVDFSSEVSTASRLCDGALIIVDVVE 127
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20304.6686.1 vs. uniprot
Match: A0A504YZY5_FASGI (Elongation factor Tu GTP-binding domain-containing protein 1 n=2 Tax=Fasciola TaxID=6191 RepID=A0A504YZY5_FASGI)

HSP 1 Score: 87.0 bits (214), Expect = 1.120e-19
Identity = 45/78 (57.69%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    1 EDEQKRGITMHSSAISLLYKAQPKQPRPAPGTRGAGADKANSFLINLIDSPGHIDFSSDVSTATRLCDCALVVVDVLE 234
            E EQ+RGITM SS + L+Y            T G   +K  SFLINL+DSPGH+DFSS+VSTA RLCD A+VVVDV+E
Sbjct:   27 EAEQERGITMKSSVVGLVYNR----------TNGCEEEKPKSFLINLVDSPGHVDFSSEVSTAVRLCDGAIVVVDVVE 94
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20304.6686.1 vs. uniprot
Match: A0A067M5C5_9AGAM (Tr-type G domain-containing protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067M5C5_9AGAM)

HSP 1 Score: 90.9 bits (224), Expect = 1.550e-19
Identity = 48/78 (61.54%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:    1 EDEQKRGITMHSSAISLLYKAQPKQPRPAPGTRGAGADKANSFLINLIDSPGHIDFSSDVSTATRLCDCALVVVDVLE 234
            EDEQ+RGITM SSAISL +K   K P         G   AN F+INLID+PGH+DFSS+VSTA+RLCD  LV+VDV+E
Sbjct:   45 EDEQERGITMESSAISLKFKMMRKLPD--------GGSAANDFVINLIDTPGHVDFSSEVSTASRLCDGTLVLVDVVE 114
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20304.6686.1 vs. uniprot
Match: A0A0R3WCR8_TAEAS (Tr-type G domain-containing protein n=1 Tax=Taenia asiatica TaxID=60517 RepID=A0A0R3WCR8_TAEAS)

HSP 1 Score: 90.9 bits (224), Expect = 1.560e-19
Identity = 47/78 (60.26%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:    1 EDEQKRGITMHSSAISLLYKAQPKQPRPAPGTRGAGADKANSFLINLIDSPGHIDFSSDVSTATRLCDCALVVVDVLE 234
            E EQ RGITM SSA++L Y    K  R    +  A AD  NS+L+N IDSPGH+DF+SDVSTA RLCDCA++VVDV E
Sbjct:   60 EAEQVRGITMKSSAVALFYNPTLKLGRHI--SPQAAADDPNSYLVNFIDSPGHVDFASDVSTAVRLCDCAMIVVDVAE 135
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20304.6686.1 vs. uniprot
Match: A0A6A4ZWQ2_9STRA (Tr-type G domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZWQ2_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.960e-19
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 EDEQKRGITMHSSAISLLYKAQPKQP--RPAPGTRGAGADKANSFLINLIDSPGHIDFSSDVSTATRLCDCALVVVDVLE 234
            E+EQ RGITM SSAISL+Y+  P  P  R A G      D    +LINL+DSPGH+DFS DVSTA RLCD ALV++DV+E
Sbjct:   62 EEEQTRGITMKSSAISLMYEG-PLTPSERKAGGLDSTNDDVTVPYLINLVDSPGHVDFSFDVSTAVRLCDGALVLIDVIE 140
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20304.6686.1 vs. uniprot
Match: A0A068WBA9_ECHGR (Elongation factor Tu GTP binding n=3 Tax=Echinococcus TaxID=6209 RepID=A0A068WBA9_ECHGR)

HSP 1 Score: 89.7 bits (221), Expect = 3.970e-19
Identity = 47/78 (60.26%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:    1 EDEQKRGITMHSSAISLLYKAQPKQPRPAPGTRGAGADKANSFLINLIDSPGHIDFSSDVSTATRLCDCALVVVDVLE 234
            E EQ RGITM SSA++L Y    K  R    +  A AD  +S+LIN IDSPGH+DF+SDVSTA RLCDCA++VVDV E
Sbjct:   60 EAEQVRGITMKSSAVALFYNPTLKLSRHI--SPQAAADDPDSYLINFIDSPGHVDFASDVSTAVRLCDCAMIVVDVAE 135
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20304.6686.1 vs. uniprot
Match: A0A397BTN4_9STRA (Tr-type G domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BTN4_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.030e-19
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 EDEQKRGITMHSSAISLLYKA--QPKQPRPAPGTRGAGADKANSFLINLIDSPGHIDFSSDVSTATRLCDCALVVVDVLE 234
            E+EQ RGITM SSAISL+Y+    P + R A G      D    +LINL+DSPGH+DFS DVSTA RLCD ALV++DV+E
Sbjct:   35 EEEQTRGITMKSSAISLMYEGLLTPSE-RKARGLDSTNDDVTVPYLINLVDSPGHVDFSFDVSTAVRLCDGALVLIDVIE 113
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20304.6686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482SLQ7_9ARCH7.110e-2165.00GTP-binding protein (Fragment) n=1 Tax=archaeon Ta... [more]
A0A7S3HQ28_9STRA9.410e-2173.24Hypothetical protein n=4 Tax=Spumella elongata Tax... [more]
A0A0R3WLW5_HYDTA1.290e-2062.82Tr-type G domain-containing protein n=2 Tax=Hydati... [more]
A0A316YYM7_9BASI6.090e-2058.97P-loop containing nucleoside triphosphate hydrolas... [more]
A0A504YZY5_FASGI1.120e-1957.69Elongation factor Tu GTP-binding domain-containing... [more]
A0A067M5C5_9AGAM1.550e-1961.54Tr-type G domain-containing protein n=1 Tax=Botryo... [more]
A0A0R3WCR8_TAEAS1.560e-1960.26Tr-type G domain-containing protein n=1 Tax=Taenia... [more]
A0A6A4ZWQ2_9STRA3.960e-1960.00Tr-type G domain-containing protein n=1 Tax=Aphano... [more]
A0A068WBA9_ECHGR3.970e-1960.26Elongation factor Tu GTP binding n=3 Tax=Echinococ... [more]
A0A397BTN4_9STRA5.030e-1958.75Tr-type G domain-containing protein n=3 Tax=Aphano... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20304contigEcto-sp13_S_contig20304:2592..2891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score122.5
Seed ortholog evalue8.1e-26
Seed eggNOG ortholog2880.D7G3I9
Preferred nameEFTUD1
Model size240
KEGG koko:K03234,ko:K14536
KEGG Pathwayko03008,ko04152,ko04921,map03008,map04152,map04921
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006412,GO:0006414,GO:0006417,GO:0006448,GO:0006518,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019222,GO:0019538,GO:0019637,GO:0019693,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0042254,GO:0042255,GO:0042256,GO:0042278,GO:0042802,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045727,GO:0045901,GO:0046039,GO:0046128,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0055086,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0072521,GO:0080090,GO:0097159,GO:0097367,GO:1901068,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1990145,GO:2000112
Exons2
EggNOG free text desc.GTPase activity
EggNOG OGsCOG0480@1,KOG0467@2759
Cds size213
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03012,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463019.825398-UTR-Ecto-sp13_S_contig20304:2591..26181681463019.825398-UTR-Ecto-sp13_S_contig20304:2591..2618Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20304 2592..2618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463019.8385272-CDS-Ecto-sp13_S_contig20304:2618..27111681463019.8385272-CDS-Ecto-sp13_S_contig20304:2618..2711Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20304 2619..2711 +
1681463019.8467479-CDS-Ecto-sp13_S_contig20304:2771..28911681463019.8467479-CDS-Ecto-sp13_S_contig20304:2771..2891Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20304 2772..2891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20304.6686.1prot_Ecto-sp13_S_contig20304.6686.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20304 2619..2891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20304.6686.1

>prot_Ecto-sp13_S_contig20304.6686.1 ID=prot_Ecto-sp13_S_contig20304.6686.1|Name=mRNA_Ecto-sp13_S_contig20304.6686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp
MHSSAISLLYKAQPKQPRPAPGTRGAGADKANSFLINLIDSPGHIDFSSD
VSTATRLCDCALVVVDVLEVC
back to top

mRNA from alignment at Ecto-sp13_S_contig20304:2592..2891+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20304.6686.1 ID=mRNA_Ecto-sp13_S_contig20304.6686.1|Name=mRNA_Ecto-sp13_S_contig20304.6686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20304:2592..2891+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGACGAGCAAAAGAGGGGAATAACCATGCACTCCAGCGCGATCTCTCT
CCTCTACAAGGCCCAGCCAAAGCAGCCGCGCCCAGCCCCCGGTACTCGAG
GGGCCGGCGCCGACAAGGCCGTCCCTGAGAACTCCTCTGCGGAGACCCCG
GCGTCTGGTGCCGGGGGCGTGGGGGCGGAGAACAGCTTTCTGATCAATCT
CATCGATTCGCCGGGGCACATCGACTTCAGCTCGGACGTCTCGACGGCAA
CGCGGTTGTGCGACTGCGCCCTCGTCGTGGTCGACGTTCTTGAGGTGTGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20304:2592..2891+

>mRNA_Ecto-sp13_S_contig20304.6686.1 ID=mRNA_Ecto-sp13_S_contig20304.6686.1|Name=mRNA_Ecto-sp13_S_contig20304.6686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20304:2592..2891+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACTCCAGCGCGATCTCTCTCCTCTACAAGGCCCAGCCAAAGCAGCC
GCGCCCAGCCCCCGGTACTCGAGGGGCCGGCGCCGACAAGGCCAACAGCT
TTCTGATCAATCTCATCGATTCGCCGGGGCACATCGACTTCAGCTCGGAC
GTCTCGACGGCAACGCGGTTGTGCGACTGCGCCCTCGTCGTGGTCGACGT
TCTTGAGGTGTGC
back to top