mRNA_Ecto-sp13_S_contig203.6683.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig203.6683.1
Unique Name	mRNA_Ecto-sp13_S_contig203.6683.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig203.6683.1 vs. uniprot
Match: A0A6H5JJY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY2_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 2.210e-47
Identity = 186/268 (69.40%), Postives = 190/268 (70.90%), Query Frame = 1

Query:  430 MSLAGLVGGYXXXXXXXXXXXXXXXXXXXXXXXQDGDREAGETGREEKRAGAACGGGVGSRNEKGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLPSVSDLFSSTAGPDFLNAPGAGQDFIVKAMKKXXXXXXXXXXXXXXXXXXXXXXXXX----VSAKRERDVAAGVGGTSVGXXXXXXXXXXXXXXXXXXXXXXGGKEKISAKDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD 1221
            MSLAGLVGGY  XXXXXXXXXXXXXXXXXXXXX          GREEKRAGA+ GGG+GS NEKGSG    XXXXXXXXXXXXXXXXXXXXXXXXXX                       SLLPSVSDLFSSTAGPDFLNAPGAGQDFIVKAMKK                 XXXXXXXX     +AKRERDVAAGV GT+VG       XXXXXXXX       GGKEKISAKDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD
Sbjct:    1 MSLAGLVGGYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREEKRAGASSGGGIGSCNEKGSGNRSNXXXXXXXXXXXXXXXXXXXXXXXXXXRKSVKANRRNPSPAGNSGGG---SLLPSVSDLFSSTAGPDFLNAPGAGQDFIVKAMKKEKKKQTAAEATTGDPTAXXXXXXXXXXXGATAKRERDVAAGVRGTAVGVKKPKGGXXXXXXXXVDKRKAAGGKEKISAKDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD 265

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BLAST of mRNA_Ecto-sp13_S_contig203.6683.1 vs. uniprot
Match: D7G8J9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8J9_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.620e-24
Identity = 58/83 (69.88%), Postives = 60/83 (72.29%), Query Frame = 1

Query:  973 SAKRERDVAAGVGGTSVGXXXXXXXXXXXXXXXXXXXXXXGGKEKISAKDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD 1221
            +AKRERDVAAGVGGT+VG                      G KEKISAKDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD
Sbjct:   29 TAKRERDVAAGVGGTAVGVKKPKGGAAGPAGPPVDKRKAAGDKEKISAKDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD 111

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BLAST of mRNA_Ecto-sp13_S_contig203.6683.1 vs. uniprot
Match: A0A7S2W639_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W639_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.120e-11
Identity = 52/143 (36.36%), Postives = 68/143 (47.55%), Query Frame = 1

Query:  793 LLPSVSDLFSSTAGPDFLNAPGAGQDFIVKAMKKXXXXXXXXXXXXXXXXXXXXXXXXXVSAKRERDVAAGVGGTSVGXXXXXXXXXXXXXXXXXXXXXXGGKEKISAKDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD 1221
            LLPSV+D+F+ST GP FL  P   ++F V  MKK                          +        A  GG S G                      G K+K++ K++VK QRL+GQSGIG+DFR+WK+D EM MRQQ+D
Sbjct:   19 LLPSVADVFASTDGPAFLAQPS--EEFSVSPMKKSRSQPQPKKEPASHSASSKPRGAEATAXX------AAPGGASSGRPEASKVSDAQKA---------GTKDKLNRKERVKMQRLRGQSGIGADFRSWKTDEEMRMRQQFD 144

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BLAST of mRNA_Ecto-sp13_S_contig203.6683.1 vs. uniprot
Match: A0A7S3XNJ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNJ5_HETAK)

HSP 1 Score: 71.6 bits (174), Expect = 1.200e-10
Identity = 52/146 (35.62%), Postives = 67/146 (45.89%), Query Frame = 1

Query:  796 LPSVSDLFSSTAGPDFLNAPGAGQDFIVKAMKKXXXXXXXXXXXXXXXXXXXXXXXXXVSAKRERDVAAGVGGTSVGXXXXXXXXXXXXXXXXXXXXXXGGKEKI----SAKDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD 1221
            LPSV DLF+ST+GPDFL++    ++FI  ++K+                            K+     A  G TS                          KEK     SAKD+VK QRLKGQ+GIG DFR WK++ EM MRQQ+D
Sbjct:   78 LPSVDDLFASTSGPDFLSS-NVSREFIAPSLKRKSLAKDPEEVARQKLE----------KKKKVYSATAASGVTSTEQKAIKFNQKEEKKASSAPNPFMDKKEKEARKQSAKDRVKNQRLKGQAGIGEDFRQWKTEEEMRMRQQFD 212

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BLAST of mRNA_Ecto-sp13_S_contig203.6683.1 vs. uniprot
Match: A0A7S2FM24_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FM24_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.210e-9
Identity = 49/143 (34.27%), Postives = 59/143 (41.26%), Query Frame = 1

Query:  793 LLPSVSDLFSSTAGPDFLNAPGAGQDFIVKAMKKXXXXXXXXXXXXXXXXXXXXXXXXXVSAKRERDVAAGVGGTSVGXXXXXXXXXXXXXXXXXXXXXXGGKEKISAKDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD 1221
            LLPSV+DLF+ T+ P FL  P     F V  MKK                          S KR+         T                           KEK   K++VK QR+KGQ+GIG DFR W+S+ EM MRQQYD
Sbjct:   68 LLPSVNDLFAGTSDPSFLAVPTKEDSFTVAPMKKRKLGGLGSNESAPEKKND--------SVKRKSHAPPRAAPTPQSVKKHVPSGRER-------------KEKPDRKERVKQQRMKGQAGIGEDFRVWRSETEMAMRQQYD 189

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BLAST of mRNA_Ecto-sp13_S_contig203.6683.1 vs. uniprot
Match: A0A662XZB5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZB5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.320e-9
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = 1

Query: 1099 KEKISAKDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD 1221
            +EK  AKD+VKGQRLKGQ+GIG++FR+WKS+ EM MRQQ+D
Sbjct:  138 REKKEAKDRVKGQRLKGQAGIGTEFRSWKSETEMAMRQQFD 178

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BLAST of mRNA_Ecto-sp13_S_contig203.6683.1 vs. uniprot
Match: A0A6G0WZM1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZM1_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.750e-9
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1

Query: 1102 EKISAKDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD 1221
            +K S K++VK QRLKGQSGIGSDFRTWKSD EM MRQ++D
Sbjct:  130 DKSSGKERVKQQRLKGQSGIGSDFRTWKSDTEMKMRQEFD 169

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BLAST of mRNA_Ecto-sp13_S_contig203.6683.1 vs. uniprot
Match: A0A024FU73_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FU73_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 6.030e-9
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1

Query: 1114 AKDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD 1221
            AKDKV+ QRLKGQSGIGSDFRTWKSD EM MRQQYD
Sbjct:  349 AKDKVRQQRLKGQSGIGSDFRTWKSDAEMVMRQQYD 384

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BLAST of mRNA_Ecto-sp13_S_contig203.6683.1 vs. uniprot
Match: A0A1V9YGD8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGD8_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.620e-9
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1

Query: 1105 KISAKDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD 1221
            K+S KD+VK QRL+GQSGIGSDFR WKS+ EM +RQQYD
Sbjct:  144 KVSGKDRVKAQRLRGQSGIGSDFRGWKSETEMQLRQQYD 182

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BLAST of mRNA_Ecto-sp13_S_contig203.6683.1 vs. uniprot
Match: F0WNR1_9STRA (Uncharacterized protein AlNc14C174G8073 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WNR1_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.620e-9
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 1

Query: 1117 KDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD 1221
            KDKVK QRLKGQSGIG+DFRTWKS+ EM MRQQYD
Sbjct:  148 KDKVKQQRLKGQSGIGTDFRTWKSEAEMVMRQQYD 182

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig203.6683.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig203.6683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JJY2_9PHAE	2.210e-47	69.40	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G8J9_ECTSI	1.620e-24	69.88	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S2W639_9STRA	1.120e-11	36.36	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S3XNJ5_HETAK	1.200e-10	35.62	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S2FM24_9STRA	1.210e-9	34.27	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A662XZB5_9STRA	3.320e-9	70.73	Uncharacterized protein n=2 Tax=Nothophytophthora ...	[more]
A0A6G0WZM1_9STRA	3.750e-9	75.00	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
A0A024FU73_9STRA	6.030e-9	88.89	Uncharacterized protein n=1 Tax=Albugo candida Tax...	[more]
A0A1V9YGD8_9STRA	6.620e-9	74.36	Uncharacterized protein n=1 Tax=Achlya hypogyna Ta...	[more]
F0WNR1_9STRA	6.620e-9	85.71	Uncharacterized protein AlNc14C174G8073 n=1 Tax=Al...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig203	contig	Ecto-sp13_S_contig203:30753..32600 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	109.0
Seed ortholog evalue	3.7e-21
Seed eggNOG ortholog	2880.D7G8J9
Model size	1484
Hectar predicted targeting category	other localisation
Exons	2
EggNOG OGs	2E19I@1,2SCNU@2759
Cds size	864
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463019.069669-UTR-Ecto-sp13_S_contig203:30752..31112	1681463019.069669-UTR-Ecto-sp13_S_contig203:30752..31112	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig203 30753..31112 +
1681463019.0982668-UTR-Ecto-sp13_S_contig203:32340..32600	1681463019.0982668-UTR-Ecto-sp13_S_contig203:32340..32600	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig203 32341..32600 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463019.0794468-CDS-Ecto-sp13_S_contig203:31112..31115	1681463019.0794468-CDS-Ecto-sp13_S_contig203:31112..31115	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig203 31113..31115 +
1681463019.0883565-CDS-Ecto-sp13_S_contig203:31479..32340	1681463019.0883565-CDS-Ecto-sp13_S_contig203:31479..32340	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig203 31480..32340 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig203.6683.1	prot_Ecto-sp13_S_contig203.6683.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig203 31113..32340 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig203:30753..32600+
coding sequence from alignment at Ecto-sp13_S_contig203:30753..32600+

protein sequence of mRNA_Ecto-sp13_S_contig203.6683.1

>prot_Ecto-sp13_S_contig203.6683.1 ID=prot_Ecto-sp13_S_contig203.6683.1|Name=mRNA_Ecto-sp13_S_contig203.6683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=288bp
MAKYHSQPSSTSYTASVFCLQESMSLAGLVGGYGSDDSDDSSNKSSSSAK
GDKADDQDGDREAGETGREEKRAGAACGGGVGSRNEKGSGNRSSSSSSSS
DDDGSGEDSSDTEDAAAVAGGGARKSGKANRRKPPPAGNSGGGSLLPSVS
DLFSSTAGPDFLNAPGAGQDFIVKAMKKEKKKQTAAEATTDDPTANAAAA
AAAVSAKRERDVAAGVGGTSVGVKKPKGGAAGPAGPPLDKRKAAGGKEKI
SAKDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD*

mRNA from alignment at Ecto-sp13_S_contig203:30753..32600+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig203.6683.1 ID=mRNA_Ecto-sp13_S_contig203.6683.1|Name=mRNA_Ecto-sp13_S_contig203.6683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1848bp|location=Sequence derived from alignment at Ecto-sp13_S_contig203:30753..32600+ (Ectocarpus species13 EcNAP12_S_4_19m)
TAAAGACTGACGTTGTCAACAATAGTCTACAGCAAAAGACGCTACTGCTG
TAGACTGTCTAGACTGGGTGGGCACTTTGAAAGGCGTATGGTTCAATCTC
GCCAGGTTGTGTTGTGCTGTGGACGACGTGAATCACCCGGATCCCCAGAC
CTTGAACCACATCTCAAACCCCTAGACTAAACAGCACACGACGCCGCCCC
GACTCCCGTATTTGACCTCTCTGCTGTTCAGCCGGTGGAGGGTGCAACTA
CATCACGCCGAGCATGAAACCTGGTGACGGGTAGAGTCCCTCACAGTTCT
ACACGAGTGAACGAATTGCTCTTGTTGTGCAGCGCCGCAACAAACCAACA
CGCCGTGTACATGGTAACGAAGTTCTACGTGCCTCGTCTGGGATGTCACA
GTCCAGCAGTCGTGATGCGGACATGCGGACTACAGCAGTAGCACTGAATA
AAAAGTCATTCATACAAGTTGATTTGCATGTCCGGCACCATCATGCTCAG
GTTGCCACTATTCCGGAGGTTATACGATGACTTGTTCAACGCTGGATGGC
TTGTCAGTAGCTGCTGAAAAACTGCAACATGAATCCATGCCTGAACCTCC
ACGACTTGTGGACTTAAATTAACCCGTTGCTGCTCGACATCCTCGCGCCC
AGATTTGCACCGGACTTGTGAGTTGATTCAATGCTGTGTTCGCCCCCCTC
CCCCCGTATCGTGCACTACTTTCCCAGGCAAAATATCATTCGCAACCGAG
CTCTACCAGCTACACAGCTAGCGTTTTCTGTCTGCAGGAGTCAATGTCGC
TAGCGGGGCTGGTAGGGGGCTATGGAAGCGACGATTCAGACGACTCCAGC
AATAAAAGCTCATCGTCTGCCAAGGGGGACAAGGCCGACGACCAGGACGG
GGATAGGGAGGCGGGAGAAACCGGGAGGGAAGAAAAGAGAGCAGGTGCTG
CCTGCGGCGGTGGTGTCGGCTCGCGCAACGAAAAGGGTTCCGGCAACAGA
AGCAGCAGCAGCAGCAGCAGCAGCGACGACGACGGCAGCGGCGAGGATAG
TAGCGATACGGAGGATGCAGCAGCAGTAGCAGGAGGAGGAGCGCGAAAAA
GCGGCAAGGCGAACAGACGAAAGCCTCCGCCAGCTGGCAACAGCGGCGGC
GGCAGTCTGCTCCCGTCCGTGAGCGACCTCTTCAGCAGCACGGCGGGGCC
GGACTTCCTCAACGCACCGGGAGCCGGCCAGGATTTCATCGTCAAGGCCA
TGAAAAAGGAAAAGAAGAAGCAAACGGCAGCAGAGGCGACAACAGACGAC
CCCACCGCAAATGCGGCTGCAGCAGCAGCAGCAGTATCAGCGAAACGGGA
GAGGGACGTAGCGGCGGGGGTGGGGGGCACGTCGGTCGGGGTAAAGAAAC
CCAAGGGAGGGGCGGCGGGACCCGCGGGGCCGCCCCTGGACAAAAGAAAA
GCGGCGGGTGGTAAGGAAAAGATCTCGGCGAAAGACAAAGTCAAGGGGCA
GCGATTGAAGGGGCAATCCGGGATCGGGTCGGACTTCCGAACATGGAAGA
GCGACCTCGAGATGACCATGAGGCAGCAGTACGATTGAAAATAGTAACGT
AGACGGTGTAGCACGCTGTGATTGATAGCGTGACGCTGATTGTGGACAAA
GTACGAACGCTCGATAGAAACTGGAGTGTTGCGGTAGGAGTTTTCGGTTG
GTGTGGATAAGAAGCTGCAGATGCGCTTGCTGGAGACCGACTGCAATTGG
TTGAAGCGGATTATGACCTTGATGGGGGCCGCTCTAATTCAATATTTTCA
TTTTTGTGGGACAACCTTCATTTATTGACTCCTGATGAGTTCCAAAGT

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig203:30753..32600+

>mRNA_Ecto-sp13_S_contig203.6683.1 ID=mRNA_Ecto-sp13_S_contig203.6683.1|Name=mRNA_Ecto-sp13_S_contig203.6683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=864bp|location=Sequence derived from alignment at Ecto-sp13_S_contig203:30753..32600+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAAAATATCATTCGCAACCGAGCTCTACCAGCTACACAGCTAGCGT
TTTCTGTCTGCAGGAGTCAATGTCGCTAGCGGGGCTGGTAGGGGGCTATG
GAAGCGACGATTCAGACGACTCCAGCAATAAAAGCTCATCGTCTGCCAAG
GGGGACAAGGCCGACGACCAGGACGGGGATAGGGAGGCGGGAGAAACCGG
GAGGGAAGAAAAGAGAGCAGGTGCTGCCTGCGGCGGTGGTGTCGGCTCGC
GCAACGAAAAGGGTTCCGGCAACAGAAGCAGCAGCAGCAGCAGCAGCAGC
GACGACGACGGCAGCGGCGAGGATAGTAGCGATACGGAGGATGCAGCAGC
AGTAGCAGGAGGAGGAGCGCGAAAAAGCGGCAAGGCGAACAGACGAAAGC
CTCCGCCAGCTGGCAACAGCGGCGGCGGCAGTCTGCTCCCGTCCGTGAGC
GACCTCTTCAGCAGCACGGCGGGGCCGGACTTCCTCAACGCACCGGGAGC
CGGCCAGGATTTCATCGTCAAGGCCATGAAAAAGGAAAAGAAGAAGCAAA
CGGCAGCAGAGGCGACAACAGACGACCCCACCGCAAATGCGGCTGCAGCA
GCAGCAGCAGTATCAGCGAAACGGGAGAGGGACGTAGCGGCGGGGGTGGG
GGGCACGTCGGTCGGGGTAAAGAAACCCAAGGGAGGGGCGGCGGGACCCG
CGGGGCCGCCCCTGGACAAAAGAAAAGCGGCGGGTGGTAAGGAAAAGATC
TCGGCGAAAGACAAAGTCAAGGGGCAGCGATTGAAGGGGCAATCCGGGAT
CGGGTCGGACTTCCGAACATGGAAGAGCGACCTCGAGATGACCATGAGGC
AGCAGTACGATTGA