mRNA_Ecto-sp13_S_contig203.6681.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Match: D7G8K0_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8K0_ECTSI) HSP 1 Score: 672 bits (1733), Expect = 3.670e-238 Identity = 391/591 (66.16%), Postives = 396/591 (67.01%), Query Frame = 1
Query: 1 MLMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDGGDNSLPFDSFLDLPRLEELRLPCNSIRDIDGRKILAQLQLGGGDGN---GYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMVRFPVLQKLSLERNQLESDAVFDVLARLPGLRELNLAFNYFTGINLDPEIAEQAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYASYPIEVITELPRIRHTRGGAXXXXXXXXRPYGDTGVTMVDEGCLPPASTFRDAGNRTLFRFERKPSGRSGDGDAPDDNIVEATLRLARESKNRAALAASR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VDEVLTSMGAGMDRMVLEKRARENSNGTQASKPELSAIIRTVNEVLDETEY 1221
MLMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVD GDNSLPFDSFLDLPRLEELRLPCNSIRDIDGRKIL QLQLGGGDGN GYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAM RFPVLQKLSLERNQLESDAVFDVL+RLPGLRELNLAFNYFTGINLD +IAEQAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYAS PIEVITELPRIR TRG XXXXXXXXRPY DTGVTMVDEGCLPPASTFRD+GNRTLFRFERKPSG SGDGDAPDDNIVEATLRLARESKNR ALAASR VDEVLTSMGAGMDRMVLEKRAREN+NGTQA+KPELSAIIRTVNEVLDETEY
Sbjct: 1 MLMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDAGDNSLPFDSFLDLPRLEELRLPCNSIRDIDGRKILTQLQLGGGDGNSGNGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMARFPVLQKLSLERNQLESDAVFDVLSRLPGLRELNLAFNYFTGINLDLDIAEQAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYASCPIEVITELPRIRQTRGXXXXXXXXXXRPYCDTGVTMVDEGCLPPASTFRDSGNRTLFRFERKPSGSSGDGDAPDDNIVEATLRLARESKNRVALAASRSAAKAAAIGVQDCTFLTSVERQQEDNHDAGPAANGGATDERENEAGADVGRLLGQEAGAVNGMSTRLLRGPIDPMVRGDPVKLRMALTTLRYTLKHPVTSSLDVQWQKQXXXXXXXXXXXLTRGKDCGAGRKTAAARARQLPRRPYQLLKPSHQVGFCARLLDEPTKDGRGGGGGDGVLGRVDEVLTSMGAGMDRMVLEKRARENNNGTQAAKPELSAIIRTVNEVLDETEY 591
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Match: A0A836C9W6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9W6_9STRA) HSP 1 Score: 249 bits (635), Expect = 4.820e-72 Identity = 148/368 (40.22%), Postives = 201/368 (54.62%), Query Frame = 1
Query: 4 LMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDGGDNSLPFDSFLDLPRLEELRLPCNSIRDIDGRKILAQLQLGGGDGNGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMVRFPVLQKLSLERNQLESDAVFDVLARLPGLRELNLAFNYFTGINLDPEIAEQAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYASYPIEVITELPRIRHTRGGAXXXXXXXXRPYGDTGVTMVDEGCLPPASTFRDAGNRTLFRFERKPSGRSGDGDAPDDNIVEATLRLARESKNRAALAASRVDEVLTSMGAGMD 1107
+++ G DLPD RR+D+SG VV++D+ +F +LQ +D GDNSL F L +L ELRL CN I + Y L RLDLSYN+LSG A++ L LP L LDL+CNGL LP + P L+ L LERNQLE V LA LP LREL+LAFNYF I EALDL FN+IG+++D + +VL +L R+ILYGNPL GP+GED G+ +E L +DR R ++ +E ITE+PR +H R G +T+V E +P + + GN+ +F+FE RS + A D I ATLR + ++ A ++ LT++ G D
Sbjct: 162 ILEGSGVDLPDGARRSDISGGNFTEVVQDDLGYFNKLQELDAGDNSLSLSCFACLQQLHELRLQCNGITAPPAPPLPPA---------SYPALTRLDLSYNALSGAAIAQLAQLPVLKYLDLSCNGLTSLPAELAALPCLECLVLERNQLEGGEVMATLATLPVLRELSLAFNYFAAI--------------EALDLAFNYIGAQADAMPLVLLPKLARVILYGNPLCGPSGEDLSGITIEGLEDAADRARDGWSVPLLEFITEMPRPKHERAGLKNSRRRMYCEMTRAPITLVSEAPVPASRDLKATGNKAVFKFEE---ARSDNAAAMD--IATATLRAMEKQRSVEAQRRAQDLTFLTAIDMGGD 501
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Match: A0A7S3XTX8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTX8_HETAK) HSP 1 Score: 230 bits (586), Expect = 2.460e-65 Identity = 133/319 (41.69%), Postives = 177/319 (55.49%), Query Frame = 1
Query: 4 LMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDGGDNSLPFDSFLDLPRLEELRLPCNSIRDIDGRKILAQLQLGGGDGNGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMVRFPVLQKLSLERNQLESDAVFDVLARLPGLRELNLAFNYFTGINLDPEIAEQAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYASYPIEVITELPRIRHTRGGAXXXXXXXXRPYGDTGVTMVDEGCLPPASTFRDAGNRTLFRFERK 960
L+ A G PDE RRAD SG+G V D+ +FVRL +D +N L + F LPRL++LRL N + + G GY L RLDLSYN++ AL L LP L LDLT NGL +LP A+ F L+ L+LE NQ + + VLA +P LREL LAFN+ + AE FP L+ LDL FN++ +E DV+ + L R+ILYGNPLAGPTGED G CV + + ++R R +++ P+EV+ E PR R RPY D +VDE LP FR+AGNR + +++
Sbjct: 105 LLQAAGVQFPDEARRADASGKGYEEVNTADLGYFVRLATLDVSENHLALEWFCRLPRLKDLRLAYNGLTAL-------------GPQEGYPALMRLDLSYNAVEPAALGCLAALPRLRALDLTSNGLAELPDALAGFHTLEILTLEHNQFDGEIPL-VLAEIPKLRELYLAFNFIDTAPAECA-AEGQFPALDLLDLAFNYVAAERDVLPLAALPVLTRVILYGNPLAGPTGEDPAGACVRRFLHLAERARQGWSARPLEVVLEQPRRRAAE-------RVNRRPYRDVETVVVDEAPLPTGGEFREAGNRLMLGRQKR 401
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Match: A0A7S4E570_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E570_9STRA) HSP 1 Score: 175 bits (443), Expect = 3.070e-45 Identity = 120/333 (36.04%), Postives = 167/333 (50.15%), Query Frame = 1
Query: 1 MLMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDGGDNS-LPFDSFLDLPRLEELRLPCNSIRDIDGRKILAQLQLGGGDGNGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMVRFPVLQKLSLERNQLESDAVFDVLARLPGLRELNLAFNYFTGINLDPEIAE-------QAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYASYPIEVITELPRIRHTRGGAXXXXXXXX-RPYGDTGVTMVDEGCLPPASTFRDAGNRTLFRFERKPSGR 972
+L+DACG + PDEG RADVSGR V D+ +F L VD DN LP + F LPRL++LR NS + + + + + +L LDLSYN+ + +S L +P L DLDLT NGLV+LP F L+KL LERN+L+ D + +D +AE + L ALDL N I SE D+ + + +L++L LYGNPL G TGED G V LV + + R + + ++V TE+PR R RG A R + GV + E +P A+ FR+ G++ L K +GR
Sbjct: 127 LLLDACGVEFPDEGHRADVSGRHATEVSSTDLEYFPNLSWVDASDNPRLPLEDFGSLPRLKDLRFAANSW------SVCSSVSE-----DWFPRLLVLDLSYNTATLDGISQLVTMPRLRDLDLTGNGLVELPDVFSDFQSLEKLFLERNRLQGDXXXXXXXXXXXXXXXXXXXXVTSTPTIDA-MAEATSLDHTEILAELVALDLAHNHIRSEKDIDDLTVLPKLEQLSLYGNPLLGATGEDPTGETVRTLVQTATQQRDGWTARHLDVTTEVPRKRPNRGTAGAAAGAKCDRRFERIGVQRIAEAPIPTAAQFREKGHQALVDALEKEAGR 447
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Match: F0YEQ3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEQ3_AURAN) HSP 1 Score: 143 bits (361), Expect = 1.010e-33 Identity = 115/346 (33.24%), Postives = 154/346 (44.51%), Query Frame = 1
Query: 1 MLMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDGGDNSLPFDSFLDLPRLEELRLPCNSIRDIDGRKILAQLQLGGGDGNGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMVRFPVLQKLSLERNQLE--SDAVFD-----VLARLPGLRELNLAFNYFTGINLDPEIAEQA-------FPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYASYPIEVITELPRIRHTRGG-AXXXXXXXXRPYGDTGVTMVDEGCLPPASTFRDAGNRTLFRFERKPS-GRSGDGDA 990
+L++ACG + PDEG RADVSG SV D+ +F RL +D DN LP F LPRL+ELR N + D + + Q +L+ LDLSYN+L A++ L + DA D L+ L LREL+LA N TG +AE F L AL+L +N I +E DV+ + L +L+ L LYGNPL GP ED+ G V + R + +EV TE+PR R RG A R + + +T V E +P A+ FR GNR L + S RSG D+
Sbjct: 74 LLLEACGVEFPDEGHRADVSGYAASSVSETDLEYFPRLATLDCSDNCLPLAPFGKLPRLKELRFAANGLERFDWPQGSSAWQ----------RLQVLDLSYNALGVQAVTNLAGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDAQDDCGNVCALSGLTRLRELSLAHNKLTGFPTLDAVAEATKVSETAIFVELVALNLAWNKIHTEGDVMGLTLLPKLEHLALYGNPLLGPAKEDASGGSVRNFAECAADARDGWTDRLLEVSTEVPRRRAPRGSMAAATNARGDRRFRNVSLTRVPEPPIPTAAEFRARGNRALLDKASQDSISRSGTWDS 409
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Match: A0A7S0N1X0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N1X0_9CHLO) HSP 1 Score: 107 bits (266), Expect = 7.990e-22 Identity = 80/234 (34.19%), Postives = 115/234 (49.15%), Query Frame = 1
Query: 4 LMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDGGDNSLP-FDSFLDLPRLEELRLPCNSIRDIDGRKILAQLQLGGGDGNGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMV---RFPVLQKLSL--ERNQLESDAVFDVLARLPGLRELNLAFNYFTGINLDPEIAEQAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLA 687
L+ ACG +LP+ + + G+ V V ED+ FV LQ +D GDN LP +LP L L++ CNS L+ LQ+ G + L L+L YN L AL L LP+L +LD++ N + P FP L+ L L + ++ V+ L LP LR L + N N D ++ FP L LDL N + E D+V V L++++L+G PLA
Sbjct: 85 LVGACGVELPEAVQTVSLMGKNYVDVEVEDLHHFVCLQDLDVGDNQLPGMHCLAELPVLRTLKMQCNS---------LSTLQIEPGS---FHTLETLELCYNCLGADALLQLATLPNLRELDVSFNCINRPPSEQFPSEAFPALETLHLGGQTPKMAPSVVYR-LGHLPRLRALRVPNNNIQSFNPD-KVRPDMFPALGLLDLADNRVEVEDDIVAFVQCPELEKVVLWGTPLA 304
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Match: A0A7S2S8V5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8V5_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 3.080e-17 Identity = 46/107 (42.99%), Postives = 64/107 (59.81%), Query Frame = 1
Query: 490 PGLRELNLAFNYFTGINLDPEIAE--QAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYASYPIEVITELPR 804
P L+EL+L FNY T P A FP L L+L FN+I SE D+V VV +L+ L++YGNPL GPTGED G +E L +R Y++ ++++TE P+
Sbjct: 1 PQLQELHLGFNYLTVF---PRAATGVDRFPCLHTLNLAFNYIASEDDLVPVVHLHKLEMLVIYGNPLLGPTGEDPSGTSIEYLAQCLLDVRTGYSTRALDILTEKPK 104
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Match: A0A7S2Y223_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y223_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 1.450e-15 Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = 1
Query: 649 RLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYASYPIEVITELPRIRHTRGGAXXXXXXXXRPYGDTGVTMVDEGCLPPASTFRDAGNRTLFRFERK 960
++ R+ILYGNP+AGP+GED G CV+ +A +++ R + P+EV+ E PR + + RPY D +V+E +P A+ F++AGN+ L+ RK
Sbjct: 7 QVTRIILYGNPIAGPSGEDPSGACVQGFLATAEQFRHGWIERPLEVVLEEPRQKVSE-------RVNRRPYRDVETVVVNEKPIPSAAQFKEAGNKRLYEGRRK 103
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Match: W6KNS6_9TRYP (Uncharacterized protein n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KNS6_9TRYP) HSP 1 Score: 88.2 bits (217), Expect = 6.380e-15 Identity = 76/264 (28.79%), Postives = 116/264 (43.94%), Query Frame = 1
Query: 4 LMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDGGDNSLPFDSFLDLPRLEELRLPCNSIRDIDGRKILAQLQL---GGGDGNGYG---------------------QLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMVRFPVLQKLSLERNQLESDA-------VFDVLARLPGLRELNLAFNYFTGINLDPEIAEQA-----FPLLEALDLGFN-FIGSESDVVVVVLFERLQRLILYGNPL 684
+++A G D P+ + L + V ED+SFF +L +D +NSL + + L LE L + CN I + G + Q Q G DG G L L+LSYN + G LS+L H P L LDL+ N + LP + + +LE NQ S VF L+ +P L E+NL N + P ++ + FP +E + + N F +E V + L L++++L NP+
Sbjct: 168 ILNAAGTDNPEAVEAVTLQCSYLTNSVPEDLSFFTKLVFLDVSENSLNVEDLVALTSLETLHIACNKISSLAGINWVLQQQRQDSGAPDGTECGPSASATLGTSKSLSLHDVLLPNLTALNLSYNRIPAGHLSLLVHFPCLEKLDLSGNDIKVLPRDLSFLTGVTHFALENNQFRSSLDKGDKSDVFQSLSTMPSLVEVNLNHNQLFHV---PPLSMHSGRGLCFPSIEIIGVADNQFQLTEGLVELGHLHRTLRQIVLTNNPI 428
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Match: A0A078A4A4_STYLE (Leucine rich repeat family protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078A4A4_STYLE) HSP 1 Score: 86.3 bits (212), Expect = 2.970e-14 Identity = 72/256 (28.12%), Postives = 124/256 (48.44%), Query Frame = 1
Query: 4 LMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDGGDNSLPFDSFLDLPRLEELRL---------PCNSIRDIDGRKILAQLQLGGGDGNGYG--QLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMVRFPVLQKLSLERNQLES-------DAVFDVLARLPGLRELNLAFNYFTGINLDP-EIAEQAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPL----AGPTGE 702
++ +C LP E +A++ + + + D+SFF L +D DN L +S ++L +L L+ NS++ + ++ Q Q +G L + L+YN++ ++ L LP L LDL+ N L +P + L++L+L N S + F LA +P +++LNL++N GI+ + +I + F L LDL +N I S+ D++ F+ L L L GNP+ G TG+
Sbjct: 241 ILYSCRVKLPHEAIKANLQSLCINIINQNDLSFFNNLSYLDASDNQL--NSQIELIKLGMLKNLTHINLAYNHINSLQFLQECHLMLQNQKDVSVKTYFGLISLETIGLAYNNIPINSIHFLKFLPKLKVLDLSSNYLSQVPDDLSYLLNLEELNLSHNLFSSHTSIYNPNKFFMALASIPRIKKLNLSYNKLEGIHYEEMQIKKVNFHKLTELDLSYNIITSQEDLLYCQNFQNLILLTLAGNPIFETQEGKTGD 494 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig203.6681.1 >prot_Ecto-sp13_S_contig203.6681.1 ID=prot_Ecto-sp13_S_contig203.6681.1|Name=mRNA_Ecto-sp13_S_contig203.6681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=408bp MLMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDGGDNSLPFback to top mRNA from alignment at Ecto-sp13_S_contig203:26705..29199- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig203.6681.1 ID=mRNA_Ecto-sp13_S_contig203.6681.1|Name=mRNA_Ecto-sp13_S_contig203.6681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig203:26705..29199- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig203:26705..29199- >mRNA_Ecto-sp13_S_contig203.6681.1 ID=mRNA_Ecto-sp13_S_contig203.6681.1|Name=mRNA_Ecto-sp13_S_contig203.6681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1224bp|location=Sequence derived from alignment at Ecto-sp13_S_contig203:26705..29199- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |