mRNA_Ecto-sp13_S_contig203.6681.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig203.6681.1
Unique NamemRNA_Ecto-sp13_S_contig203.6681.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Match: D7G8K0_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8K0_ECTSI)

HSP 1 Score: 672 bits (1733), Expect = 3.670e-238
Identity = 391/591 (66.16%), Postives = 396/591 (67.01%), Query Frame = 1
Query:    1 MLMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDGGDNSLPFDSFLDLPRLEELRLPCNSIRDIDGRKILAQLQLGGGDGN---GYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMVRFPVLQKLSLERNQLESDAVFDVLARLPGLRELNLAFNYFTGINLDPEIAEQAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYASYPIEVITELPRIRHTRGGAXXXXXXXXRPYGDTGVTMVDEGCLPPASTFRDAGNRTLFRFERKPSGRSGDGDAPDDNIVEATLRLARESKNRAALAASR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VDEVLTSMGAGMDRMVLEKRARENSNGTQASKPELSAIIRTVNEVLDETEY 1221
            MLMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVD GDNSLPFDSFLDLPRLEELRLPCNSIRDIDGRKIL QLQLGGGDGN   GYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAM RFPVLQKLSLERNQLESDAVFDVL+RLPGLRELNLAFNYFTGINLD +IAEQAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYAS PIEVITELPRIR TRG  XXXXXXXXRPY DTGVTMVDEGCLPPASTFRD+GNRTLFRFERKPSG SGDGDAPDDNIVEATLRLARESKNR ALAASR                                                                                                                                                                                     VDEVLTSMGAGMDRMVLEKRAREN+NGTQA+KPELSAIIRTVNEVLDETEY
Sbjct:    1 MLMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDAGDNSLPFDSFLDLPRLEELRLPCNSIRDIDGRKILTQLQLGGGDGNSGNGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMARFPVLQKLSLERNQLESDAVFDVLSRLPGLRELNLAFNYFTGINLDLDIAEQAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYASCPIEVITELPRIRQTRGXXXXXXXXXXRPYCDTGVTMVDEGCLPPASTFRDSGNRTLFRFERKPSGSSGDGDAPDDNIVEATLRLARESKNRVALAASRSAAKAAAIGVQDCTFLTSVERQQEDNHDAGPAANGGATDERENEAGADVGRLLGQEAGAVNGMSTRLLRGPIDPMVRGDPVKLRMALTTLRYTLKHPVTSSLDVQWQKQXXXXXXXXXXXLTRGKDCGAGRKTAAARARQLPRRPYQLLKPSHQVGFCARLLDEPTKDGRGGGGGDGVLGRVDEVLTSMGAGMDRMVLEKRARENNNGTQAAKPELSAIIRTVNEVLDETEY 591          
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Match: A0A836C9W6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9W6_9STRA)

HSP 1 Score: 249 bits (635), Expect = 4.820e-72
Identity = 148/368 (40.22%), Postives = 201/368 (54.62%), Query Frame = 1
Query:    4 LMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDGGDNSLPFDSFLDLPRLEELRLPCNSIRDIDGRKILAQLQLGGGDGNGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMVRFPVLQKLSLERNQLESDAVFDVLARLPGLRELNLAFNYFTGINLDPEIAEQAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYASYPIEVITELPRIRHTRGGAXXXXXXXXRPYGDTGVTMVDEGCLPPASTFRDAGNRTLFRFERKPSGRSGDGDAPDDNIVEATLRLARESKNRAALAASRVDEVLTSMGAGMD 1107
            +++  G DLPD  RR+D+SG     VV++D+ +F +LQ +D GDNSL    F  L +L ELRL CN I       +             Y  L RLDLSYN+LSG A++ L  LP L  LDL+CNGL  LP  +   P L+ L LERNQLE   V   LA LP LREL+LAFNYF  I              EALDL FN+IG+++D + +VL  +L R+ILYGNPL GP+GED  G+ +E L   +DR R  ++   +E ITE+PR +H R G                +T+V E  +P +   +  GN+ +F+FE     RS +  A D  I  ATLR   + ++  A   ++    LT++  G D
Sbjct:  162 ILEGSGVDLPDGARRSDISGGNFTEVVQDDLGYFNKLQELDAGDNSLSLSCFACLQQLHELRLQCNGITAPPAPPLPPA---------SYPALTRLDLSYNALSGAAIAQLAQLPVLKYLDLSCNGLTSLPAELAALPCLECLVLERNQLEGGEVMATLATLPVLRELSLAFNYFAAI--------------EALDLAFNYIGAQADAMPLVLLPKLARVILYGNPLCGPSGEDLSGITIEGLEDAADRARDGWSVPLLEFITEMPRPKHERAGLKNSRRRMYCEMTRAPITLVSEAPVPASRDLKATGNKAVFKFEE---ARSDNAAAMD--IATATLRAMEKQRSVEAQRRAQDLTFLTAIDMGGD 501          
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Match: A0A7S3XTX8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTX8_HETAK)

HSP 1 Score: 230 bits (586), Expect = 2.460e-65
Identity = 133/319 (41.69%), Postives = 177/319 (55.49%), Query Frame = 1
Query:    4 LMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDGGDNSLPFDSFLDLPRLEELRLPCNSIRDIDGRKILAQLQLGGGDGNGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMVRFPVLQKLSLERNQLESDAVFDVLARLPGLRELNLAFNYFTGINLDPEIAEQAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYASYPIEVITELPRIRHTRGGAXXXXXXXXRPYGDTGVTMVDEGCLPPASTFRDAGNRTLFRFERK 960
            L+ A G   PDE RRAD SG+G   V   D+ +FVRL  +D  +N L  + F  LPRL++LRL  N +  +             G   GY  L RLDLSYN++   AL  L  LP L  LDLT NGL +LP A+  F  L+ L+LE NQ + +    VLA +P LREL LAFN+      +   AE  FP L+ LDL FN++ +E DV+ +     L R+ILYGNPLAGPTGED  G CV + +  ++R R  +++ P+EV+ E PR R              RPY D    +VDE  LP    FR+AGNR +   +++
Sbjct:  105 LLQAAGVQFPDEARRADASGKGYEEVNTADLGYFVRLATLDVSENHLALEWFCRLPRLKDLRLAYNGLTAL-------------GPQEGYPALMRLDLSYNAVEPAALGCLAALPRLRALDLTSNGLAELPDALAGFHTLEILTLEHNQFDGEIPL-VLAEIPKLRELYLAFNFIDTAPAECA-AEGQFPALDLLDLAFNYVAAERDVLPLAALPVLTRVILYGNPLAGPTGEDPAGACVRRFLHLAERARQGWSARPLEVVLEQPRRRAAE-------RVNRRPYRDVETVVVDEAPLPTGGEFREAGNRLMLGRQKR 401          
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Match: A0A7S4E570_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E570_9STRA)

HSP 1 Score: 175 bits (443), Expect = 3.070e-45
Identity = 120/333 (36.04%), Postives = 167/333 (50.15%), Query Frame = 1
Query:    1 MLMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDGGDNS-LPFDSFLDLPRLEELRLPCNSIRDIDGRKILAQLQLGGGDGNGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMVRFPVLQKLSLERNQLESDAVFDVLARLPGLRELNLAFNYFTGINLDPEIAE-------QAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYASYPIEVITELPRIRHTRGGAXXXXXXXX-RPYGDTGVTMVDEGCLPPASTFRDAGNRTLFRFERKPSGR 972
            +L+DACG + PDEG RADVSGR    V   D+ +F  L  VD  DN  LP + F  LPRL++LR   NS        + + +       + + +L  LDLSYN+ +   +S L  +P L DLDLT NGLV+LP     F  L+KL LERN+L+ D                      +   +D  +AE       +    L ALDL  N I SE D+  + +  +L++L LYGNPL G TGED  G  V  LV  + + R  + +  ++V TE+PR R  RG A         R +   GV  + E  +P A+ FR+ G++ L     K +GR
Sbjct:  127 LLLDACGVEFPDEGHRADVSGRHATEVSSTDLEYFPNLSWVDASDNPRLPLEDFGSLPRLKDLRFAANSW------SVCSSVSE-----DWFPRLLVLDLSYNTATLDGISQLVTMPRLRDLDLTGNGLVELPDVFSDFQSLEKLFLERNRLQGDXXXXXXXXXXXXXXXXXXXXVTSTPTIDA-MAEATSLDHTEILAELVALDLAHNHIRSEKDIDDLTVLPKLEQLSLYGNPLLGATGEDPTGETVRTLVQTATQQRDGWTARHLDVTTEVPRKRPNRGTAGAAAGAKCDRRFERIGVQRIAEAPIPTAAQFREKGHQALVDALEKEAGR 447          
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Match: F0YEQ3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEQ3_AURAN)

HSP 1 Score: 143 bits (361), Expect = 1.010e-33
Identity = 115/346 (33.24%), Postives = 154/346 (44.51%), Query Frame = 1
Query:    1 MLMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDGGDNSLPFDSFLDLPRLEELRLPCNSIRDIDGRKILAQLQLGGGDGNGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMVRFPVLQKLSLERNQLE--SDAVFD-----VLARLPGLRELNLAFNYFTGINLDPEIAEQA-------FPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYASYPIEVITELPRIRHTRGG-AXXXXXXXXRPYGDTGVTMVDEGCLPPASTFRDAGNRTLFRFERKPS-GRSGDGDA 990
            +L++ACG + PDEG RADVSG    SV   D+ +F RL  +D  DN LP   F  LPRL+ELR   N +   D  +  +  Q          +L+ LDLSYN+L   A++ L  +                                        DA  D      L+ L  LREL+LA N  TG      +AE         F  L AL+L +N I +E DV+ + L  +L+ L LYGNPL GP  ED+ G  V      +   R  +    +EV TE+PR R  RG  A        R + +  +T V E  +P A+ FR  GNR L     + S  RSG  D+
Sbjct:   74 LLLEACGVEFPDEGHRADVSGYAASSVSETDLEYFPRLATLDCSDNCLPLAPFGKLPRLKELRFAANGLERFDWPQGSSAWQ----------RLQVLDLSYNALGVQAVTNLAGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDAQDDCGNVCALSGLTRLRELSLAHNKLTGFPTLDAVAEATKVSETAIFVELVALNLAWNKIHTEGDVMGLTLLPKLEHLALYGNPLLGPAKEDASGGSVRNFAECAADARDGWTDRLLEVSTEVPRRRAPRGSMAAATNARGDRRFRNVSLTRVPEPPIPTAAEFRARGNRALLDKASQDSISRSGTWDS 409          
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Match: A0A7S0N1X0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N1X0_9CHLO)

HSP 1 Score: 107 bits (266), Expect = 7.990e-22
Identity = 80/234 (34.19%), Postives = 115/234 (49.15%), Query Frame = 1
Query:    4 LMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDGGDNSLP-FDSFLDLPRLEELRLPCNSIRDIDGRKILAQLQLGGGDGNGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMV---RFPVLQKLSL--ERNQLESDAVFDVLARLPGLRELNLAFNYFTGINLDPEIAEQAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLA 687
            L+ ACG +LP+  +   + G+  V V  ED+  FV LQ +D GDN LP      +LP L  L++ CNS         L+ LQ+  G    +  L  L+L YN L   AL  L  LP+L +LD++ N +   P        FP L+ L L  +  ++    V+  L  LP LR L +  N     N D ++    FP L  LDL  N +  E D+V  V    L++++L+G PLA
Sbjct:   85 LVGACGVELPEAVQTVSLMGKNYVDVEVEDLHHFVCLQDLDVGDNQLPGMHCLAELPVLRTLKMQCNS---------LSTLQIEPGS---FHTLETLELCYNCLGADALLQLATLPNLRELDVSFNCINRPPSEQFPSEAFPALETLHLGGQTPKMAPSVVYR-LGHLPRLRALRVPNNNIQSFNPD-KVRPDMFPALGLLDLADNRVEVEDDIVAFVQCPELEKVVLWGTPLA 304          
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Match: A0A7S2S8V5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8V5_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.080e-17
Identity = 46/107 (42.99%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  490 PGLRELNLAFNYFTGINLDPEIAE--QAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYASYPIEVITELPR 804
            P L+EL+L FNY T     P  A     FP L  L+L FN+I SE D+V VV   +L+ L++YGNPL GPTGED  G  +E L      +R  Y++  ++++TE P+
Sbjct:    1 PQLQELHLGFNYLTVF---PRAATGVDRFPCLHTLNLAFNYIASEDDLVPVVHLHKLEMLVIYGNPLLGPTGEDPSGTSIEYLAQCLLDVRTGYSTRALDILTEKPK 104          
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Match: A0A7S2Y223_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y223_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.450e-15
Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  649 RLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYASYPIEVITELPRIRHTRGGAXXXXXXXXRPYGDTGVTMVDEGCLPPASTFRDAGNRTLFRFERK 960
            ++ R+ILYGNP+AGP+GED  G CV+  +A +++ R  +   P+EV+ E PR + +            RPY D    +V+E  +P A+ F++AGN+ L+   RK
Sbjct:    7 QVTRIILYGNPIAGPSGEDPSGACVQGFLATAEQFRHGWIERPLEVVLEEPRQKVSE-------RVNRRPYRDVETVVVNEKPIPSAAQFKEAGNKRLYEGRRK 103          
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Match: W6KNS6_9TRYP (Uncharacterized protein n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KNS6_9TRYP)

HSP 1 Score: 88.2 bits (217), Expect = 6.380e-15
Identity = 76/264 (28.79%), Postives = 116/264 (43.94%), Query Frame = 1
Query:    4 LMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDGGDNSLPFDSFLDLPRLEELRLPCNSIRDIDGRKILAQLQL---GGGDGNGYG---------------------QLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMVRFPVLQKLSLERNQLESDA-------VFDVLARLPGLRELNLAFNYFTGINLDPEIAEQA-----FPLLEALDLGFN-FIGSESDVVVVVLFERLQRLILYGNPL 684
            +++A G D P+      +    L + V ED+SFF +L  +D  +NSL  +  + L  LE L + CN I  + G   + Q Q    G  DG   G                      L  L+LSYN +  G LS+L H P L  LDL+ N +  LP  +     +   +LE NQ  S         VF  L+ +P L E+NL  N    +   P ++  +     FP +E + +  N F  +E  V +  L   L++++L  NP+
Sbjct:  168 ILNAAGTDNPEAVEAVTLQCSYLTNSVPEDLSFFTKLVFLDVSENSLNVEDLVALTSLETLHIACNKISSLAGINWVLQQQRQDSGAPDGTECGPSASATLGTSKSLSLHDVLLPNLTALNLSYNRIPAGHLSLLVHFPCLEKLDLSGNDIKVLPRDLSFLTGVTHFALENNQFRSSLDKGDKSDVFQSLSTMPSLVEVNLNHNQLFHV---PPLSMHSGRGLCFPSIEIIGVADNQFQLTEGLVELGHLHRTLRQIVLTNNPI 428          
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Match: A0A078A4A4_STYLE (Leucine rich repeat family protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078A4A4_STYLE)

HSP 1 Score: 86.3 bits (212), Expect = 2.970e-14
Identity = 72/256 (28.12%), Postives = 124/256 (48.44%), Query Frame = 1
Query:    4 LMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDGGDNSLPFDSFLDLPRLEELRL---------PCNSIRDIDGRKILAQLQLGGGDGNGYG--QLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMVRFPVLQKLSLERNQLES-------DAVFDVLARLPGLRELNLAFNYFTGINLDP-EIAEQAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPL----AGPTGE 702
            ++ +C   LP E  +A++    +  + + D+SFF  L  +D  DN L  +S ++L +L  L+            NS++ +    ++ Q Q        +G   L  + L+YN++   ++  L  LP L  LDL+ N L  +P  +     L++L+L  N   S       +  F  LA +P +++LNL++N   GI+ +  +I +  F  L  LDL +N I S+ D++    F+ L  L L GNP+     G TG+
Sbjct:  241 ILYSCRVKLPHEAIKANLQSLCINIINQNDLSFFNNLSYLDASDNQL--NSQIELIKLGMLKNLTHINLAYNHINSLQFLQECHLMLQNQKDVSVKTYFGLISLETIGLAYNNIPINSIHFLKFLPKLKVLDLSSNYLSQVPDDLSYLLNLEELNLSHNLFSSHTSIYNPNKFFMALASIPRIKKLNLSYNKLEGIHYEEMQIKKVNFHKLTELDLSYNIITSQEDLLYCQNFQNLILLTLAGNPIFETQEGKTGD 494          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig203.6681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8K0_ECTSI3.670e-23866.16Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A836C9W6_9STRA4.820e-7240.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XTX8_HETAK2.460e-6541.69Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4E570_9STRA3.070e-4536.04Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
F0YEQ3_AURAN1.010e-3333.24Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S0N1X0_9CHLO7.990e-2234.19Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A7S2S8V5_9STRA3.080e-1742.99Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2Y223_9STRA1.450e-1537.50Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W6KNS6_9TRYP6.380e-1528.79Uncharacterized protein n=1 Tax=Phytomonas sp. iso... [more]
A0A078A4A4_STYLE2.970e-1428.13Leucine rich repeat family protein n=1 Tax=Stylony... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig203contigEcto-sp13_S_contig203:26705..29199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score674.1
Seed ortholog evalue4.1e-191
Seed eggNOG ortholog2880.D7G8K0
Model size1321
KEGG koko:K08460
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-14_003290.1
Cds size1224
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04030
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig203.6681.1prot_Ecto-sp13_S_contig203.6681.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig203 26802..29199 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463019.5832508-UTR-Ecto-sp13_S_contig203:26704..268011681463019.5832508-UTR-Ecto-sp13_S_contig203:26704..26801Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig203 26705..26801 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463019.5954032-CDS-Ecto-sp13_S_contig203:26801..269481681463019.5954032-CDS-Ecto-sp13_S_contig203:26801..26948Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig203 26802..26948 -
1681463019.6056492-CDS-Ecto-sp13_S_contig203:27243..272531681463019.6056492-CDS-Ecto-sp13_S_contig203:27243..27253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig203 27244..27253 -
1681463019.6155102-CDS-Ecto-sp13_S_contig203:27793..281111681463019.6155102-CDS-Ecto-sp13_S_contig203:27793..28111Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig203 27794..28111 -
1681463019.6247377-CDS-Ecto-sp13_S_contig203:28301..285761681463019.6247377-CDS-Ecto-sp13_S_contig203:28301..28576Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig203 28302..28576 -
1681463019.6349614-CDS-Ecto-sp13_S_contig203:28725..291991681463019.6349614-CDS-Ecto-sp13_S_contig203:28725..29199Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig203 28726..29199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig203.6681.1

>prot_Ecto-sp13_S_contig203.6681.1 ID=prot_Ecto-sp13_S_contig203.6681.1|Name=mRNA_Ecto-sp13_S_contig203.6681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=408bp
MLMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDGGDNSLPF
DSFLDLPRLEELRLPCNSIRDIDGRKILAQLQLGGGDGNGYGQLRRLDLS
YNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMVRFPVLQKLSLERNQ
LESDAVFDVLARLPGLRELNLAFNYFTGINLDPEIAEQAFPLLEALDLGF
NFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDR
IRGDYASYPIEVITELPRIRHTRGGAGGGGGRRRRPYGDTGVTMVDEGCL
PPASTFRDAGNRTLFRFERKPSGRSGDGDAPDDNIVEATLRLARESKNRA
ALAASRVDEVLTSMGAGMDRMVLEKRARENSNGTQASKPELSAIIRTVNE
VLDETEY*
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mRNA from alignment at Ecto-sp13_S_contig203:26705..29199-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig203.6681.1 ID=mRNA_Ecto-sp13_S_contig203.6681.1|Name=mRNA_Ecto-sp13_S_contig203.6681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig203:26705..29199- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGATGGACGCATGCGGGTGCGACCTCCCTGACGAGGGCCGCAGGGC CGACGTGAGCGGTAGAGGCCTCGTAAGCGTGGTCAGGGAGGACATGTCCT TCTTCGTCCGCTTGCAGGCCGTTGACGGTGGAGACAACAGCCTTCCCTTT GACAGCTTCCTGGACCTACCACGGCTGGAGGAGCTTCGCCTCCCCTGCAA CAGCATCCGCGACATCGACGGACGGAAGATCCTTGCGCAGCTGCAGCTCG GCGGGGGCGACGGCAACGGCTACGGCCAGCTGCGACGTCTAGACCTCTCT TACAATAGTTTGTCGGGTGGTGCCCTGTCGGTGCTGACGCACCTCCCGAG TTTAACCGACCTGGACCTCACATGCAACGGCCTCGTCGATCTTCCCGTGG CCATGGTTCGCTTTCCGGTTCTCCAGAAGCTATCGCTGGAACGCAATCAA CTCGAGAGCGACGCAGTGTTTGATGTAAGCTGAGCGCGGCTGTGGCGACG AGCTCCTTGCGTAGCTTGTTTTTCACGCGCTCCGTTTGTCGACGTGGGCA CTACGTGGTACACCATCGAAGTCTTTCGTGCCATGCCAACCAATTCCTAA CCCCCGTCGCGTCCCGATCGTAGGTGCTTGCTAGGCTCCCAGGCTTGCGA GAGCTCAATCTCGCCTTCAACTACTTCACGGGCATCAACCTCGACCCAGA GATAGCAGAACAAGCGTTCCCTCTTTTAGAGGCGCTCGATCTCGGGTTTA ACTTTATCGGCAGCGAGAGCGACGTGGTCGTGGTGGTGCTTTTCGAACGG TTGCAGAGGCTGATTCTGTACGGGAACCCACTGGCGGGGCCCACGGGAGA AGACTCGCTTGGGCTCTGCGTCGAAAAGCTTGTTGCCGAGTCAGACAGGT ATGTTTGGCCGTTCAGCTTCATGCCTGGGAAAAGTTATGGTTGAAGCCGC TGTTGTCGTCGAGGCCGCCATTGGTTAGTTTGGCTGTTGTTTGATGAAAC ACTCGTTCAATACCGACCCTCCTCTCCGTCAACTATCCGTCGATGCGTCG CGTCTGCCGCGGTCGTGCGTTGCGTTACACAACGAAAGAATCCGGGGAGA CTACGCGAGTTATCCCATAGAGGTCATCACAGAGCTTCCCAGAATAAGAC ATACCCGAGGCGGGGCGGGAGGGGGTGGGGGGCGTCGGCGGCGCCCGTAC GGCGACACGGGTGTCACGATGGTCGACGAGGGCTGCTTGCCGCCGGCAAG CACGTTCCGCGACGCCGGGAACAGGACTCTCTTTAGATTCGAACGGAAGC CAAGCGGCAGGAGCGGTGACGGCGACGCCCCCGACGACAACATCGTGGAG GCGACGCTGCGCCTGGCCAGGGAGAGCAAGAACCGGGCAGCCTTGGCCGC CAGCAGGTCCGCGGCAACGGCGGCGGCCATAGGGGTGCAGGATTGCACGT TCTTGACCAGCGTAGAGCGGCAACAAGAAGACAACCACGACGATGGACCT GCTGCCAATGGCGTTGCCACGGATGACGGAGAAAATGCAGCTGGTGAGGA CGTTGGCAGGTTGCTAGGCCGAGAAGCAGGTGCCGGGAATGGAATGTCTA CTCGATTGTTGCGGGGACCGATCGATCCGATTGTCCGCAGGGACCCCGTC AAGCTGCGGATGGCGCTGACGGCCCTCCGGTACACGCTGAAGCACCCCGT GACGTCTTCGTTAGACGTTCAATGGCAGAAGCAGCAGCAGCAGCAACAAC AACAACAGCAGCAGCTCACGCGCGGCAAGGATTGCGGGGCGGGCCGAAAA ACGGCCGCCGCTCGCGCGAGACAGCTCCCCCGCCGTCCGTATCGGCTCCT CAAGTCATCGCACCAAGTGGGCTTCTGCGCTAGACTGTTGGACGAACCGA CAAAAGATGGTTGTGGAAGCGGCGGGGGTGACGGCGTTTTGGGCAGGGTG GACGAGGTAAGCAGCGGTGTCGTTCTGCGACTGGGTGCATCAAGCTTCCA TTGGGTTCCCTGCCACGACGAGAACCATCATGCCTCATATTGCCAAGCGG CAGATTGCCAAGCGGCCGCTATATCTATCCACGCTCGCCTACAACTGAAT GTTTCCATTGGTGTCTTCGCGTGCTACCCGAAACCAGGTGTAACTCGCGA GCAATTCCTAGCTCAGTCGAGAAACCCCACGTGCCAGAACCAGCATTCTC ACGAAACGTATGCCCCCTCTGACCCCCTCTATCGTTGACGTGTGACGTCA GGTGTTGACGTCAATGGGCGCGGGTATGGACAGGATGGTTCTCGAGAAGC GAGCGAGGGAGAACAGCAACGGTACCCAGGCGTCCAAGCCCGAACTGTCG GCGATCATCCGAACGGTTAACGAAGTTTTGGATGAGACAGAGTACTGACT TGCGTTTGCATTAATGCCTTTGCCGAGTGAGGGGAGGGAGGTCGTCAACC AAGAAAAACATCCGGCGCGGCAGCAGCCACGGGAAGGTCACGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig203:26705..29199-

>mRNA_Ecto-sp13_S_contig203.6681.1 ID=mRNA_Ecto-sp13_S_contig203.6681.1|Name=mRNA_Ecto-sp13_S_contig203.6681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1224bp|location=Sequence derived from alignment at Ecto-sp13_S_contig203:26705..29199- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGATGGACGCATGCGGGTGCGACCTCCCTGACGAGGGCCGCAGGGC
CGACGTGAGCGGTAGAGGCCTCGTAAGCGTGGTCAGGGAGGACATGTCCT
TCTTCGTCCGCTTGCAGGCCGTTGACGGTGGAGACAACAGCCTTCCCTTT
GACAGCTTCCTGGACCTACCACGGCTGGAGGAGCTTCGCCTCCCCTGCAA
CAGCATCCGCGACATCGACGGACGGAAGATCCTTGCGCAGCTGCAGCTCG
GCGGGGGCGACGGCAACGGCTACGGCCAGCTGCGACGTCTAGACCTCTCT
TACAATAGTTTGTCGGGTGGTGCCCTGTCGGTGCTGACGCACCTCCCGAG
TTTAACCGACCTGGACCTCACATGCAACGGCCTCGTCGATCTTCCCGTGG
CCATGGTTCGCTTTCCGGTTCTCCAGAAGCTATCGCTGGAACGCAATCAA
CTCGAGAGCGACGCAGTGTTTGATGTGCTTGCTAGGCTCCCAGGCTTGCG
AGAGCTCAATCTCGCCTTCAACTACTTCACGGGCATCAACCTCGACCCAG
AGATAGCAGAACAAGCGTTCCCTCTTTTAGAGGCGCTCGATCTCGGGTTT
AACTTTATCGGCAGCGAGAGCGACGTGGTCGTGGTGGTGCTTTTCGAACG
GTTGCAGAGGCTGATTCTGTACGGGAACCCACTGGCGGGGCCCACGGGAG
AAGACTCGCTTGGGCTCTGCGTCGAAAAGCTTGTTGCCGAGTCAGACAGA
ATCCGGGGAGACTACGCGAGTTATCCCATAGAGGTCATCACAGAGCTTCC
CAGAATAAGACATACCCGAGGCGGGGCGGGAGGGGGTGGGGGGCGTCGGC
GGCGCCCGTACGGCGACACGGGTGTCACGATGGTCGACGAGGGCTGCTTG
CCGCCGGCAAGCACGTTCCGCGACGCCGGGAACAGGACTCTCTTTAGATT
CGAACGGAAGCCAAGCGGCAGGAGCGGTGACGGCGACGCCCCCGACGACA
ACATCGTGGAGGCGACGCTGCGCCTGGCCAGGGAGAGCAAGAACCGGGCA
GCCTTGGCCGCCAGCAGGGTGGACGAGGTGTTGACGTCAATGGGCGCGGG
TATGGACAGGATGGTTCTCGAGAAGCGAGCGAGGGAGAACAGCAACGGTA
CCCAGGCGTCCAAGCCCGAACTGTCGGCGATCATCCGAACGGTTAACGAA
GTTTTGGATGAGACAGAGTACTGA
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