mRNA_Ecto-sp13_S_contig20298.6677.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20298.6677.1
Unique NamemRNA_Ecto-sp13_S_contig20298.6677.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20298.6677.1 vs. uniprot
Match: A0A6H5L5W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5W5_9PHAE)

HSP 1 Score: 724 bits (1870), Expect = 3.080e-258
Identity = 405/459 (88.24%), Postives = 418/459 (91.07%), Query Frame = 1 
Query:    1 RFCEEDRLLCEYGCWALAVFAGEGDSDSDPSVFRFQEAVVEAGGLAAVGCAVDAHRDSAQLRRYGVSALAAIVHENASTAGQLHSLNLHATVAEDSIRRWPNDPELSCLACWVLRSVVEPPSRLPRQGDLELGGKGDVVLHGGIGGNGGSVVGSKFRMRRNCVEEVEVGSAMPAENSGESSLQKRNGGGLEGDNSLALGSGDDPRDQSGDADETGXXXXXG--VFMEGSTMSGSVFGMGDNETSDLLISLADDDDIDDATTATGRKLSSPFGQAGSMSLTASTTTAAAPVSAVTASSTPNKHQGLEGVQVNEGRRDAPVEQLGGEIHAGQSTISSESPREGAPIGGGTREAGEGRVAGQAGVVMAAVFEGEEDGEVLERLLKLAEATK---------------VLNHDNEDTRKAASRLVGAILRQIDSTYVRSSRRRRRASQARVARVLSEGQAIGAL 1326
            +FCEEDR+LCEYGCWALAVFAGEGDSDSDPSVFRFQEAVVEAGGLAAVG AVDAHRDSAQLRRYGVSALAAIVHENASTAGQLHSLNLHATVAEDSIRRWPNDPELSCLACWVLRSVVEPPSRLPRQGDLELGGKGDVVL GGI G+GGSVVGSKFRMRR  VEEVEVGSAMPAENSGESSLQKRNGGG EG++SLALGSGDDPRDQ GDADETGXXXXX   VFMEGSTMSGSVFGMGDNETSDLLISLADDDD+DDATTATGRK SSP GQAGS+S  AST TAAAPVS VTASS   KHQGLEGV VNEGRRDAP+E+LGGE+HAGQSTISSESPR GA IGGGT+EAGEGRVA Q GVVMAA F+GEEDG+VLERLLKLAEATK               VLNHDNEDTRKAASRLVGAILRQIDSTYVRSSRRRRRASQARVARVL EGQAIGAL
Sbjct:  178 KFCEEDRVLCEYGCWALAVFAGEGDSDSDPSVFRFQEAVVEAGGLAAVGYAVDAHRDSAQLRRYGVSALAAIVHENASTAGQLHSLNLHATVAEDSIRRWPNDPELSCLACWVLRSVVEPPSRLPRQGDLELGGKGDVVLLGGISGDGGSVVGSKFRMRRKSVEEVEVGSAMPAENSGESSLQKRNGGGSEGNSSLALGSGDDPRDQLGDADETGXXXXXXXXVFMEGSTMSGSVFGMGDNETSDLLISLADDDDVDDATTATGRKPSSPLGQAGSVSPAASTITAAAPVSGVTASSAAKKHQGLEGVPVNEGRRDAPMEKLGGEVHAGQSTISSESPRGGASIGGGTKEAGEGRVAVQVGVVMAAAFKGEEDGDVLERLLKLAEATKGRVTTRRNEIRFARKVLNHDNEDTRKAASRLVGAILRQIDSTYVRSSRRRRRASQARVARVLREGQAIGAL 636
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BLAST of mRNA_Ecto-sp13_S_contig20298.6677.1 vs. uniprot
Match: D7G2D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2D6_ECTSI)

HSP 1 Score: 655 bits (1691), Expect = 1.270e-231
Identity = 374/444 (84.23%), Postives = 382/444 (86.04%), Query Frame = 1 
Query:    1 RFCEEDRLLCEYGCWALAVFAGEGDSDSD--PSVFRFQEAVVEAGGLAAVGCAVDAHRDSAQLRRYGVSALAAIVHENASTAGQLHSLNLHATVAEDSIRRWPNDPELSCLACWVLRSVVEPPSRLPRQGDLELGGKGDVVLHGGIGGNGGSVVGSKFRMRRNCVEEVEVGSAMPAENSGESSLQKRNGGGLEGDNSLALGSGDDPRDQSGDADETGXXXXXGVFMEGSTMSGSVFGMGDNETSDLLISLADDDDIDDATTATGRKLSSPFGQAGSMSLTASTTTAAAPVSAVTASSTPNKHQGLEGVQVNEGRRDAPVEQLGGEIHAGQSTISSESPREGAPIGGGTREAGEGRVAGQAGVVMAAVFEGEEDGEVLERLLKLAEATKVLNHDNEDTRKAASRLVGAILRQIDSTYVRSSRRRRRASQARVARVLSEGQAIGAL 1326
            +FCEEDRLLCEYGCWALAVFAGEG       PSVFRFQEAVVEAGGLAAVGCAVDAH DSAQLRR GVSALAAIVH+NASTAGQLHSLNL ATVAEDSIRRWPNDPELSCLACWVLRSVVEPPSRLPRQGD EL GKGDVVLHGGIGG+GGSVVGSKFR+RR  VEEVEVGSAMP ENSGESSLQKRNGGGLEGDNSLALGSGDDPRDQSGDA+ETG     GVFMEGSTMSGSVFGMGDNETSDLLISLADDDDID                  S+S          PVSAVTASST NKH+GLEGV VNEGR DAP+EQLG    AGQSTISSES R G PIG GTREAGEGRVAGQAGVVMAA FEGEEDGEVLERLLKLAEATKVLNHDNEDTRKAASRLV AILRQIDSTYVRSSRRRRRASQARVARVL EGQAIGAL
Sbjct:  160 KFCEEDRLLCEYGCWALAVFAGEGXXXXXXXPSVFRFQEAVVEAGGLAAVGCAVDAHPDSAQLRRCGVSALAAIVHDNASTAGQLHSLNLQATVAEDSIRRWPNDPELSCLACWVLRSVVEPPSRLPRQGDPELRGKGDVVLHGGIGGDGGSVVGSKFRLRRKSVEEVEVGSAMP-ENSGESSLQKRNGGGLEGDNSLALGSGDDPRDQSGDANETGGCGG-GVFMEGSTMSGSVFGMGDNETSDLLISLADDDDIDXXXXXXXXXXXXXXXXXXSVSPAXXXXXXXXPVSAVTASSTSNKHRGLEGVPVNEGRWDAPMEQLG---RAGQSTISSESLRAGEPIGSGTREAGEGRVAGQAGVVMAAAFEGEEDGEVLERLLKLAEATKVLNHDNEDTRKAASRLVEAILRQIDSTYVRSSRRRRRASQARVARVLREGQAIGAL 598
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20298.6677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5W5_9PHAE3.080e-25888.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2D6_ECTSI1.270e-23184.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20298contigEcto-sp13_S_contig20298:738..2530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1329
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-00_005760.1
Cds size1329
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463018.9496648-CDS-Ecto-sp13_S_contig20298:737..9251681463018.9496648-CDS-Ecto-sp13_S_contig20298:737..925Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20298 738..925 +
1681463018.960628-CDS-Ecto-sp13_S_contig20298:1050..20201681463018.960628-CDS-Ecto-sp13_S_contig20298:1050..2020Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20298 1051..2020 +
1681463018.9710233-CDS-Ecto-sp13_S_contig20298:2359..25301681463018.9710233-CDS-Ecto-sp13_S_contig20298:2359..2530Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20298 2360..2530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20298.6677.1prot_Ecto-sp13_S_contig20298.6677.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20298 738..2530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20298.6677.1

>prot_Ecto-sp13_S_contig20298.6677.1 ID=prot_Ecto-sp13_S_contig20298.6677.1|Name=mRNA_Ecto-sp13_S_contig20298.6677.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=443bp
RFCEEDRLLCEYGCWALAVFAGEGDSDSDPSVFRFQEAVVEAGGLAAVGC
AVDAHRDSAQLRRYGVSALAAIVHENASTAGQLHSLNLHATVAEDSIRRW
PNDPELSCLACWVLRSVVEPPSRLPRQGDLELGGKGDVVLHGGIGGNGGS
VVGSKFRMRRNCVEEVEVGSAMPAENSGESSLQKRNGGGLEGDNSLALGS
GDDPRDQSGDADETGGGGGGGVFMEGSTMSGSVFGMGDNETSDLLISLAD
DDDIDDATTATGRKLSSPFGQAGSMSLTASTTTAAAPVSAVTASSTPNKH
QGLEGVQVNEGRRDAPVEQLGGEIHAGQSTISSESPREGAPIGGGTREAG
EGRVAGQAGVVMAAVFEGEEDGEVLERLLKLAEATKVLNHDNEDTRKAAS
RLVGAILRQIDSTYVRSSRRRRRASQARVARVLSEGQAIGAL*
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mRNA from alignment at Ecto-sp13_S_contig20298:738..2530+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20298.6677.1 ID=mRNA_Ecto-sp13_S_contig20298.6677.1|Name=mRNA_Ecto-sp13_S_contig20298.6677.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1793bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20298:738..2530+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTCTGCGAGGAAGACAGACTACTTTGCGAGTACGGGTGCTGGGCCCT
CGCCGTCTTCGCCGGAGAGGGGGACTCGGACTCGGACCCGAGCGTGTTTC
GGTTTCAGGAGGCCGTGGTGGAGGCGGGGGGGCTGGCGGCGGTGGGGTGT
GCCGTGGACGCTCACCGCGACTCTGCGCAGCTACGCAGGTAGGCGCGGTC
CAACTTGGACATCGTGAAAGGGTTGTTGCACCTGCCCTCGATGAGACTCT
GGGCGAAACACCAAAAGCAGCAGCATCAGAATTAATCAACGACTTTTCCT
CATCGCAAACCAGGTACGGAGTCAGCGCCTTAGCCGCGATCGTCCACGAA
AATGCCTCAACCGCGGGGCAACTCCACTCCCTAAACCTACACGCTACAGT
GGCCGAAGATTCCATCCGCCGCTGGCCCAACGACCCCGAGCTGAGCTGCC
TGGCTTGCTGGGTGTTGCGGTCTGTCGTGGAGCCGCCATCGAGGTTGCCC
AGGCAAGGCGATCTCGAACTCGGAGGCAAGGGAGATGTGGTTCTTCATGG
CGGGATCGGTGGCAATGGTGGCAGCGTCGTCGGCAGTAAATTCCGAATGC
GAAGAAACTGTGTCGAGGAGGTGGAGGTGGGTTCGGCGATGCCAGCAGAA
AACAGTGGAGAGAGCTCGCTTCAAAAGAGGAACGGCGGTGGCTTGGAGGG
AGACAATTCTCTTGCCCTCGGGAGTGGGGATGATCCCCGCGATCAATCGG
GTGATGCCGATGAGACCGGCGGCGGCGGCGGCGGCGGAGTGTTTATGGAG
GGGAGCACGATGAGTGGAAGTGTATTCGGTATGGGCGACAATGAAACGAG
CGATCTCCTTATTAGCCTCGCTGATGACGACGATATCGACGATGCAACTA
CCGCAACCGGACGGAAACTCTCGTCGCCCTTCGGGCAAGCCGGTAGCATG
AGCCTAACGGCGTCAACGACCACAGCGGCAGCCCCGGTTTCTGCCGTGAC
CGCCTCTTCCACACCCAACAAACACCAGGGACTCGAGGGTGTCCAAGTGA
ATGAGGGGCGGCGGGACGCCCCAGTGGAGCAGTTGGGTGGAGAGATTCAT
GCTGGGCAATCTACCATCAGCAGCGAAAGCCCGAGAGAGGGAGCACCAAT
TGGCGGCGGAACGAGGGAGGCCGGGGAAGGGCGTGTCGCCGGCCAAGCGG
GAGTCGTTATGGCGGCGGTGTTCGAAGGTGAAGAGGACGGAGAGGTGCTC
GAGAGGCTGCTCAAGCTGGCGGAGGCGACCAAGGTGCAGCACAAGACCCT
CTGCTTTTCTTGAGACGTTGTGATTTAATTGGACTGCTCTTTAGTACAGT
AGTTGTTGGCCGACATTTCGAGCAGTGTTCCGCTTGTTGTGCCACGCCAT
TAATTAACTCCGATCAGATTATTCGAGGTATCCAGCTGTAGTCGTGGCTC
ACTTTTTGTGATGAGAGACAAGATGCAGCTTGAAAGCCAGAAAAAAGAGA
GCTTCGACAAGCGCTACTCCACACTACCCCCCCGACGCTGGAAGCACAGC
CACACGTTTTGACACGATCGTTTGAAGGGACGAGTAACAACAAGACGAAA
CGTAACTCGATACGCCCGGAAGGTCTTGAACCACGACAACGAAGACACAC
GCAAGGCCGCGTCTCGTCTGGTGGGAGCCATTCTAAGACAGATCGACTCG
ACCTACGTCCGCAGCTCGAGGCGACGGAGAAGGGCTAGCCAGGCTAGGGT
AGCCCGTGTTCTCAGCGAGGGGCAGGCGATCGGGGCCTTGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20298:738..2530+

>mRNA_Ecto-sp13_S_contig20298.6677.1 ID=mRNA_Ecto-sp13_S_contig20298.6677.1|Name=mRNA_Ecto-sp13_S_contig20298.6677.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1329bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20298:738..2530+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTCTGCGAGGAAGACAGACTACTTTGCGAGTACGGGTGCTGGGCCCT
CGCCGTCTTCGCCGGAGAGGGGGACTCGGACTCGGACCCGAGCGTGTTTC
GGTTTCAGGAGGCCGTGGTGGAGGCGGGGGGGCTGGCGGCGGTGGGGTGT
GCCGTGGACGCTCACCGCGACTCTGCGCAGCTACGCAGGTACGGAGTCAG
CGCCTTAGCCGCGATCGTCCACGAAAATGCCTCAACCGCGGGGCAACTCC
ACTCCCTAAACCTACACGCTACAGTGGCCGAAGATTCCATCCGCCGCTGG
CCCAACGACCCCGAGCTGAGCTGCCTGGCTTGCTGGGTGTTGCGGTCTGT
CGTGGAGCCGCCATCGAGGTTGCCCAGGCAAGGCGATCTCGAACTCGGAG
GCAAGGGAGATGTGGTTCTTCATGGCGGGATCGGTGGCAATGGTGGCAGC
GTCGTCGGCAGTAAATTCCGAATGCGAAGAAACTGTGTCGAGGAGGTGGA
GGTGGGTTCGGCGATGCCAGCAGAAAACAGTGGAGAGAGCTCGCTTCAAA
AGAGGAACGGCGGTGGCTTGGAGGGAGACAATTCTCTTGCCCTCGGGAGT
GGGGATGATCCCCGCGATCAATCGGGTGATGCCGATGAGACCGGCGGCGG
CGGCGGCGGCGGAGTGTTTATGGAGGGGAGCACGATGAGTGGAAGTGTAT
TCGGTATGGGCGACAATGAAACGAGCGATCTCCTTATTAGCCTCGCTGAT
GACGACGATATCGACGATGCAACTACCGCAACCGGACGGAAACTCTCGTC
GCCCTTCGGGCAAGCCGGTAGCATGAGCCTAACGGCGTCAACGACCACAG
CGGCAGCCCCGGTTTCTGCCGTGACCGCCTCTTCCACACCCAACAAACAC
CAGGGACTCGAGGGTGTCCAAGTGAATGAGGGGCGGCGGGACGCCCCAGT
GGAGCAGTTGGGTGGAGAGATTCATGCTGGGCAATCTACCATCAGCAGCG
AAAGCCCGAGAGAGGGAGCACCAATTGGCGGCGGAACGAGGGAGGCCGGG
GAAGGGCGTGTCGCCGGCCAAGCGGGAGTCGTTATGGCGGCGGTGTTCGA
AGGTGAAGAGGACGGAGAGGTGCTCGAGAGGCTGCTCAAGCTGGCGGAGG
CGACCAAGGTCTTGAACCACGACAACGAAGACACACGCAAGGCCGCGTCT
CGTCTGGTGGGAGCCATTCTAAGACAGATCGACTCGACCTACGTCCGCAG
CTCGAGGCGACGGAGAAGGGCTAGCCAGGCTAGGGTAGCCCGTGTTCTCA
GCGAGGGGCAGGCGATCGGGGCCTTGTAA
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