mRNA_Ecto-sp13_S_contig2029.6674.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2029.6674.1
Unique NamemRNA_Ecto-sp13_S_contig2029.6674.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2029.6674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2029contigEcto-sp13_S_contig2029:8868..9498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size632
Hectar predicted targeting categoryother localisation
Exons1
Cds size441
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463018.8117647-UTR-Ecto-sp13_S_contig2029:8867..90571681463018.8117647-UTR-Ecto-sp13_S_contig2029:8867..9057Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2029 8868..9057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463018.8209305-CDS-Ecto-sp13_S_contig2029:9057..94981681463018.8209305-CDS-Ecto-sp13_S_contig2029:9057..9498Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2029 9058..9498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2029.6674.1prot_Ecto-sp13_S_contig2029.6674.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2029 9058..9498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2029.6674.1

>prot_Ecto-sp13_S_contig2029.6674.1 ID=prot_Ecto-sp13_S_contig2029.6674.1|Name=mRNA_Ecto-sp13_S_contig2029.6674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
MLIFVSRSVGDLAPAPLPYVVQAHHAFLGRTSFVIECFLPLSLPRVKGQR
EEKKRVPSGRANDDPSKGYSIHCLEGVLVGGYERRLRKVQDSSTNKYYRR
CVVRYPINVCCFRYRLLAWWNRRAFVSFIAPSFAATIGILFVPLKVT
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mRNA from alignment at Ecto-sp13_S_contig2029:8868..9498+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2029.6674.1 ID=mRNA_Ecto-sp13_S_contig2029.6674.1|Name=mRNA_Ecto-sp13_S_contig2029.6674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=631bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2029:8868..9498+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTGTGGGTGCATGCACAGGGGGCTAGGGCAGGATAACCGCTAGTTGG
TGACACACATTATATTTCTTGATCGAATCGACCCGAATCACACGCAAGCC
AGCGCCTACTCTAGCTAGCTAGTTTAGGTGTGCATTGTAACTTTCGTCGG
CGGCACCTTGTTTTATCTACCGCGAGTATGGGTGCACGTGATGTTGATTT
TTGTCAGCAGGTCAGTTGGTGATTTGGCCCCCGCGCCCCTCCCTTACGTC
GTTCAAGCGCACCACGCGTTTCTTGGGCGAACAAGTTTCGTGATTGAGTG
CTTCCTCCCGCTTTCTTTACCACGTGTCAAGGGCCAGAGAGAGGAGAAGA
AGCGGGTACCGAGTGGCCGAGCCAACGATGATCCGTCTAAAGGCTACAGC
ATTCATTGTCTGGAGGGGGTACTCGTAGGCGGGTACGAGCGACGCCTTCG
AAAGGTACAGGATAGCTCGACGAATAAATACTACCGAAGATGTGTAGTAC
GCTACCCTATAAACGTGTGTTGTTTCAGATATAGACTACTTGCCTGGTGG
AACCGTCGGGCGTTTGTGTCATTCATTGCTCCCAGTTTTGCGGCCACCAT
TGGCATATTGTTCGTGCCATTAAAAGTTACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2029:8868..9498+

>mRNA_Ecto-sp13_S_contig2029.6674.1 ID=mRNA_Ecto-sp13_S_contig2029.6674.1|Name=mRNA_Ecto-sp13_S_contig2029.6674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2029:8868..9498+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGATTTTTGTCAGCAGGTCAGTTGGTGATTTGGCCCCCGCGCCCCT
CCCTTACGTCGTTCAAGCGCACCACGCGTTTCTTGGGCGAACAAGTTTCG
TGATTGAGTGCTTCCTCCCGCTTTCTTTACCACGTGTCAAGGGCCAGAGA
GAGGAGAAGAAGCGGGTACCGAGTGGCCGAGCCAACGATGATCCGTCTAA
AGGCTACAGCATTCATTGTCTGGAGGGGGTACTCGTAGGCGGGTACGAGC
GACGCCTTCGAAAGGTACAGGATAGCTCGACGAATAAATACTACCGAAGA
TGTGTAGTACGCTACCCTATAAACGTGTGTTGTTTCAGATATAGACTACT
TGCCTGGTGGAACCGTCGGGCGTTTGTGTCATTCATTGCTCCCAGTTTTG
CGGCCACCATTGGCATATTGTTCGTGCCATTAAAAGTTACC
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