mRNA_Ecto-sp13_S_contig20280.6672.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20280.6672.1
Unique NamemRNA_Ecto-sp13_S_contig20280.6672.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20280.6672.1 vs. uniprot
Match: A0A835YUH4_9STRA (ULP_PROTEASE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUH4_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 7.460e-5
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   49 FLQAKWDDS--ERGVAEINQELLPLVRPLAPQQDNGSDCGMYALRYAK 186
            ++QA+W  +  E     ++   LPLV+P APQQ NG DCG+Y L+YA+
Sbjct:   77 YVQAEWKAAYPEAPPLTLSVRDLPLVKPRAPQQSNGCDCGVYVLQYAE 124
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20280.6672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YUH4_9STRA7.460e-545.83ULP_PROTEASE domain-containing protein n=1 Tax=Tri... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20280contigEcto-sp13_S_contig20280:2497..2685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score62.0
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog2880.D8LDN6
Model size189
KEGG koko:K08596
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000278,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006276,GO:0006323,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0022402,GO:0030071,GO:0030261,GO:0031577,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070011,GO:0070122,GO:0070138,GO:0070140,GO:0070646,GO:0070647,GO:0071103,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001251
Exons1
EggNOG free text desc.protein modification by small protein removal
EggNOG OGsCOG5160@1,KOG0779@2759
EC3.4.22.68
Cds size189
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463018.735397-CDS-Ecto-sp13_S_contig20280:2496..26851681463018.735397-CDS-Ecto-sp13_S_contig20280:2496..2685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20280 2497..2685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20280.6672.1prot_Ecto-sp13_S_contig20280.6672.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20280 2497..2685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20280.6672.1

>prot_Ecto-sp13_S_contig20280.6672.1 ID=prot_Ecto-sp13_S_contig20280.6672.1|Name=mRNA_Ecto-sp13_S_contig20280.6672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
TLVYLDVLVDELRPFSFLQAKWDDSERGVAEINQELLPLVRPLAPQQDNG
SDCGMYALRYAKA
back to top

mRNA from alignment at Ecto-sp13_S_contig20280:2497..2685+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20280.6672.1 ID=mRNA_Ecto-sp13_S_contig20280.6672.1|Name=mRNA_Ecto-sp13_S_contig20280.6672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20280:2497..2685+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCCTTGTGTACCTTGACGTGCTTGTGGACGAACTGCGACCCTTCAGTTT
CCTTCAGGCCAAGTGGGACGACAGCGAGAGAGGCGTTGCAGAGATTAACC
AGGAGTTGCTTCCCCTGGTGCGACCGCTTGCGCCGCAGCAGGACAACGGC
AGCGACTGCGGAATGTACGCCCTACGATACGCTAAGGCA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20280:2497..2685+

>mRNA_Ecto-sp13_S_contig20280.6672.1 ID=mRNA_Ecto-sp13_S_contig20280.6672.1|Name=mRNA_Ecto-sp13_S_contig20280.6672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20280:2497..2685+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCCTTGTGTACCTTGACGTGCTTGTGGACGAACTGCGACCCTTCAGTTT
CCTTCAGGCCAAGTGGGACGACAGCGAGAGAGGCGTTGCAGAGATTAACC
AGGAGTTGCTTCCCCTGGTGCGACCGCTTGCGCCGCAGCAGGACAACGGC
AGCGACTGCGGAATGTACGCCCTACGATACGCTAAGGCA
back to top