mRNA_Ecto-sp13_S_contig2028.6671.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2028.6671.1
Unique NamemRNA_Ecto-sp13_S_contig2028.6671.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig2028.6671.1 vs. uniprot
Match: D7FHZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ9_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 3.700e-58
Identity = 99/122 (81.15%), Postives = 105/122 (86.07%), Query Frame = 1 
Query:  124 MVPVSQVVHAADVSQKLGRDDALHRLDDCVHSFSTSSPVRKGASSQGGVGVFATQPFEEQ*IVMAFRRHCSTRTVSKRLAARRLLGLNGYVYHDGGDPVYLDVSTFGFPTRVMNNSDKPNCF 489
            MVPV QV+ AADVSQKLGRDD      DCVH F+TSSPVRKGASSQGGVGVFATQPFEEQ +VMAFRRHCS   VSKRLAAR LLGLNGYV HDGGDP+YLD+STFGFP RVMNNSDKP+ F
Sbjct:   84 MVPVWQVLDAADVSQKLGRDD------DCVHYFTTSSPVRKGASSQGGVGVFATQPFEEQEVVMAFRRHCSP--VSKRLAARLLLGLNGYVVHDGGDPIYLDISTFGFPARVMNNSDKPHVF 197
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BLAST of mRNA_Ecto-sp13_S_contig2028.6671.1 vs. uniprot
Match: A0A6H5JLU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU8_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 8.510e-46
Identity = 88/113 (77.88%), Postives = 93/113 (82.30%), Query Frame = 1 
Query:   49 LIFDRQPVQLALPAQPAQGVDLPAPMVPVSQVVHAADVSQKLGRDDALHRLDDCVHSFSTSSPVRKGASSQGGVGVFATQPFEEQ*IVMAFRRHCSTRTVSKRLAARRLLGLN 387
            L+FDR PVQLALPAQPAQGVDLPAPMVP  QV+ AA VSQKLGRDDAL +L D VH FST SPVR+GASSQGGVGVFATQPFEEQ +VM  RR CS   VSK LAARR L LN
Sbjct:   77 LLFDRPPVQLALPAQPAQGVDLPAPMVPAWQVLDAAAVSQKLGRDDALEQLRDYVHYFSTGSPVRQGASSQGGVGVFATQPFEEQEVVMTLRRRCSA--VSKWLAARRNLSLN 187
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BLAST of mRNA_Ecto-sp13_S_contig2028.6671.1 vs. uniprot
Match: D7FHY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY0_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 5.630e-24
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:  313 MAFRRHCSTRTVSKRLAARRLLGLNGYVYHDGGDPVYLDVSTFGFPTRVMNNSDKPNCF 489
            MAFRRHCS+  VSKRLAAR LLGLNGYV HD GDP+YLD+STF FPTRVMNNSDKP  F
Sbjct:    1 MAFRRHCSS--VSKRLAARLLLGLNGYVVHDSGDPIYLDISTFDFPTRVMNNSDKPKVF 57
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2028.6671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHZ9_ECTSI3.700e-5881.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLU8_9PHAE8.510e-4677.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHY0_ECTSI5.630e-2481.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2028contigEcto-sp13_S_contig2028:11687..14388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size886
Hectar predicted targeting categoryother localisation
Exons5
Cds size306
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2028.6671.1prot_Ecto-sp13_S_contig2028.6671.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2028 12870..14388 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463018.6376362-UTR-Ecto-sp13_S_contig2028:11686..121851681463018.6376362-UTR-Ecto-sp13_S_contig2028:11686..12185Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2028 11687..12185 -
1681463018.6555943-UTR-Ecto-sp13_S_contig2028:12788..128691681463018.6555943-UTR-Ecto-sp13_S_contig2028:12788..12869Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2028 12789..12869 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463018.669454-CDS-Ecto-sp13_S_contig2028:12869..129141681463018.669454-CDS-Ecto-sp13_S_contig2028:12869..12914Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2028 12870..12914 -
1681463018.687539-CDS-Ecto-sp13_S_contig2028:13521..136591681463018.687539-CDS-Ecto-sp13_S_contig2028:13521..13659Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2028 13522..13659 -
1681463018.6981964-CDS-Ecto-sp13_S_contig2028:13934..140101681463018.6981964-CDS-Ecto-sp13_S_contig2028:13934..14010Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2028 13935..14010 -
1681463018.7089403-CDS-Ecto-sp13_S_contig2028:14341..143881681463018.7089403-CDS-Ecto-sp13_S_contig2028:14341..14388Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2028 14342..14388 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2028.6671.1

>prot_Ecto-sp13_S_contig2028.6671.1 ID=prot_Ecto-sp13_S_contig2028.6671.1|Name=mRNA_Ecto-sp13_S_contig2028.6671.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
RRQRRRLRSSRWRPSRLIFDRQPVQLALPAQPAQGVDLPAPMVPVSQVVH
AADVSQKLGRDDALHRLDDCVHSFSTSSPVRKGASSQGGVGVFATQPFEE
Q*
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mRNA from alignment at Ecto-sp13_S_contig2028:11687..14388-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2028.6671.1 ID=mRNA_Ecto-sp13_S_contig2028.6671.1|Name=mRNA_Ecto-sp13_S_contig2028.6671.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2028:11687..14388- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCGGCAGCGGCGGCGGCTTCGGTCGAGCAGATGGAGGCCGTCGAGGCA
ATGATGTGGGTACACTGCGAGGGCAAGGTGTTTGAAGGTGTTTTGAGATA
TTGCGTACAATGAACAAGGGATGGTATCATTAAGTTCCAAACGTGAGGGC
GTAGTGTACCTCTTCTGGTTGTGGATGGCCATTTATGCCTCACGCGTTAC
AATAGCACCTTCAGTGAGCGTTCGGGGGGTCCCGACGTGGTGGTCGGGGG
GCGTTAGCGGAAGAAGCCTTGTGAAGACGGCGTATCACTGTCCCCTCGCC
GTTTGGCTCAATTGACAACTCCCGGGGACCTCTACCCCCCGCGCCTTCCT
CGTATGTGCCGTGCGCCCGCCGAACCAGGCTGATTTTCGACCGCCAGCCC
GTCCAGCTCGCCCTGCCCGCTCAGCCTGCCCAGGGCGTGGACTTGCCTGC
ACCGGTAGGGTTTCTGTAGTCGGCACATGGTATCCACTATACAGCTCAAG
CGGTCGATTTGGAATACACACAAGGATTTTGTTATTGTCTGTGTCGTATG
TGTGTATATATCGTGGTGTTGTGAGAAATTAGTCGAAGGACTGGCAGTAA
CCAAGAGCCCAAACTGCTTTGAGAGCTTGCGCCGTAGACTTTACCTAACA
CATGCGCATACGGCCGAAATATTCCTATGCCACGTGTCTGATGTCTTGAG
CTCCGTGCCATGCCCTCCATCACAACCAGATGGTACCGGTGTCGCAAGTG
GTGCATGCGGCTGACGTGTCCCAGAAGCTCGGAAGGGACGACGCCCTTCA
CCGACTCGACGACTGCGTCCATTCTTTTTCAACGAGCAGCCCTGTACGAA
AGGGGGCGTCTTCGCAGGTGCGAGGGAGAGAAGAGAAGAGAATAGAGAGA
GAGGGTACTGCTGTAGGAGGGACAGGTTTTTGACCGCCTGGCTGGGTGTT
TGCCAGTTTGTGGCGGGTCCTGTCTTTCGAAGCCGGGGGTGGTATGCACA
TGTGTGTGCGTGTGTTTGTTCGAAATGCTTGCTACAAGTTGGATGGATTT
CGTTTCATTTTCTAGCAACAAGACGCGCAGCTGCTACGGTAGTTTTTTTT
CGTTTCGTGTTTGGCTTTTCCGCCATTGGTTGGCCTACTCTCGGTCTACT
TCAAATTTACATTTTTTGCAGGAATATTTCGTAAGGCAATACCCGCGGGT
TTCACCGTCTAGGTCAACCGCGCGTGTCATGGGCAGATATGTTGGCGGGT
CGTTCCAACTCTCCCGTTTTCGTTTCCTATACATTACGGGTCACGACCTG
ACCCTCGGATCAGGTTTCGACCCGTGGACACAGGCATGCTAATTCCCAGT
TCAGTTTCACGATATTTGGAACGTGCCATGATTTTCTTGAGCTACGCTAC
GCTAGACTACACTACACTGCACCCTTGCCTCACCCGTGCCGCCCGTAATT
TCGTGGAACCGTCGATAATCACAGGGGGGGGTTGGCGTGTTCGCCACCCA
GCCTTTCGAAGAGCAATAGATCGTCATGGCCTTCCGGAGGCATTGCTCCA
CGCGCACGGTCTCGAAGCGGTTGGCGGCGCGCCGCCTATTGGGCCTGAAC
GTGAGAGCGAGGGAGGGCAAAATGGGCATAGTTACGATAGTTTTCCTCTC
AAGCGCGTGGATTCTGCATAGCACAAAGAGATCGAAAGTGGAACAGCGTG
CTTAGCGTACCCGGGCCTTTCGTTTTGTGAGCTTCGCGATCATTCGCGAT
CATCGTCCCATCTGTATGTAGTCTGCCTTGAACTATGCACGTCCATGGCT
TTCGGACCAAGTTTTGGAACAAAATGCTTGGACACCAACACCCTCGGCTG
TGCCTCGACGGCAATTCCCGTGGTTTTCAGAAGGTTTTCGTTGAAAAGGA
GCAACCGTGATACCCCCCGTATATTCACGCACTCTCAGTCCAAGCTGGGT
TCAGTAGGATTCCCTGCCCTTTTGCTTCTCCTTTTTTGTCAGGCATAGAC
TACGTCGCAGCAGCGGCCGCAGCAGCGACCACCTAACGTACAATGTGTGG
GTGGATGGTATGACCTTTATGATCATGTGCCGTCAAATCGGTTCGGTTGG
GGTACGTACGCCAATTCGTCAGCGAGCCCCCCGCCCCCTCTTCGCTCCCG
CCAAGGCCACCCTTTACATTCCCTGAACTCCCCGCCTGTCATCGCTGCCG
CAGGGATATGTTTACCACGATGGGGGAGACCCCGTCTACCTGGACGTTTC
CACGTTCGGCTTCCCCACCCGAGTGATGAACAACTCGGACAAGCCCAACT
GTTTTGATGCACGGTGACCAGCGTACGTTGTTTCCGGCGGTTGGTGAAAT
AGGTGTGATGGATGATGCACTGTCGAGTGTGCTGAGAGCACCATTTGTGT
AAACGATCTTGAATTATATTTTGCTCAGTTCGTGTATCTCCGGGTACAGG
CGGGCGGTAAGCGCGCCCAGGAAGACTGGACGTTTGTCCTTTCGTTATTG
TGTGTTTTGGCGATTCTGCTGTTGTTGTGCAAAGAGGAGAAAGGTGAAGA
GGGGTTCCTTTCATCGCCCCTGCAGAGCACCCCGGCATGACAACAGCTTG
TGTCTCTTGTACTTTCTGTTGCGGTCGAACGTTGGTCGGTTTTTCTCAAG
TGCCCGAAAGGTCTGCTGTAGTTCTCACACCGATCAATTTCGAGGAACCT
CG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2028:11687..14388-

>mRNA_Ecto-sp13_S_contig2028.6671.1 ID=mRNA_Ecto-sp13_S_contig2028.6671.1|Name=mRNA_Ecto-sp13_S_contig2028.6671.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2028:11687..14388- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCGGCAGCGGCGGCGGCTTCGGTCGAGCAGATGGAGGCCGTCGAGGCT
GATTTTCGACCGCCAGCCCGTCCAGCTCGCCCTGCCCGCTCAGCCTGCCC
AGGGCGTGGACTTGCCTGCACCGATGGTACCGGTGTCGCAAGTGGTGCAT
GCGGCTGACGTGTCCCAGAAGCTCGGAAGGGACGACGCCCTTCACCGACT
CGACGACTGCGTCCATTCTTTTTCAACGAGCAGCCCTGTACGAAAGGGGG
CGTCTTCGCAGGGGGGGGTTGGCGTGTTCGCCACCCAGCCTTTCGAAGAG
CAATAG
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