mRNA_Ecto-sp13_S_contig2028.6669.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2028.6669.1
Unique NamemRNA_Ecto-sp13_S_contig2028.6669.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig2028.6669.1 vs. uniprot
Match: D7FHX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX9_ECTSI)

HSP 1 Score: 280 bits (717), Expect = 7.040e-95
Identity = 153/163 (93.87%), Postives = 157/163 (96.32%), Query Frame = 1 
Query:    1 MTEKGKEDGSVAKTVEEKVQELVTDAKEEAGGSTSAAGVLDTLKGGFQTVTGGVGTVWQTLGEWKDQGTPLRKMFKTARLELEDTAAKARERAACRQTKMRENFQKMAEERQARFKEFDKSGAWSSRVMNRRRVLTVCYGSLLLLLLIIMAFCVLSASIMIGR 489
            MTEKGKEDGSVA+T+EEKVQELVTDAKEE GGSTSAAGVLDTLKGGFQTVTGGVG VWQTLGEWKDQGTPLRKMFKTARL++EDTAAKARERAACRQTKMREN QKMAEERQARFKEFDKSGA SSRVMNRRR LTVC GSLLLLLLIIMAFCVLSASIMIGR
Sbjct:    1 MTEKGKEDGSVAETLEEKVQELVTDAKEETGGSTSAAGVLDTLKGGFQTVTGGVGMVWQTLGEWKDQGTPLRKMFKTARLDIEDTAAKARERAACRQTKMRENMQKMAEERQARFKEFDKSGARSSRVMNRRRSLTVCPGSLLLLLLIIMAFCVLSASIMIGR 163
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BLAST of mRNA_Ecto-sp13_S_contig2028.6669.1 vs. uniprot
Match: A0A6H5JKU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKU3_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 1.870e-61
Identity = 103/123 (83.74%), Postives = 112/123 (91.06%), Query Frame = 1 
Query:    1 MTEKGKEDGSVAKTVEEKVQELVTDAKEEAGGSTSAAGVLDTLKGGFQTVTGGVGTVWQTLGEWKDQGTPLRKMFKTARLELEDTAAKARERAACRQTKMRENFQKMAEERQARFKEFDKSGA 369
            M +KGKEDGSVA+T+EEKVQEL TDAKEE  GSTS+ GVLDTLKGGFQT+TGG+G   QTLGEWKDQGTPLR+MFKTARL+LED  AKARE+AACRQTKMREN QKMAEERQARFKEFDKSGA
Sbjct:    1 MAKKGKEDGSVAETLEEKVQELATDAKEETSGSTSSPGVLDTLKGGFQTITGGMGMAGQTLGEWKDQGTPLRRMFKTARLDLEDATAKAREKAACRQTKMRENLQKMAEERQARFKEFDKSGA 123
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2028.6669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHX9_ECTSI7.040e-9593.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKU3_9PHAE1.870e-6183.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2028contigEcto-sp13_S_contig2028:6245..8585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size492
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_006300.1
Cds size492
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463018.582198-CDS-Ecto-sp13_S_contig2028:6244..64461681463018.582198-CDS-Ecto-sp13_S_contig2028:6244..6446Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2028 6245..6446 +
1681463018.5938735-CDS-Ecto-sp13_S_contig2028:8001..81661681463018.5938735-CDS-Ecto-sp13_S_contig2028:8001..8166Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2028 8002..8166 +
1681463018.6077828-CDS-Ecto-sp13_S_contig2028:8460..85851681463018.6077828-CDS-Ecto-sp13_S_contig2028:8460..8585Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2028 8461..8585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2028.6669.1prot_Ecto-sp13_S_contig2028.6669.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2028 6245..8585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2028.6669.1

>prot_Ecto-sp13_S_contig2028.6669.1 ID=prot_Ecto-sp13_S_contig2028.6669.1|Name=mRNA_Ecto-sp13_S_contig2028.6669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=164bp
MTEKGKEDGSVAKTVEEKVQELVTDAKEEAGGSTSAAGVLDTLKGGFQTV
TGGVGTVWQTLGEWKDQGTPLRKMFKTARLELEDTAAKARERAACRQTKM
RENFQKMAEERQARFKEFDKSGAWSSRVMNRRRVLTVCYGSLLLLLLIIM
AFCVLSASIMIGR*
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mRNA from alignment at Ecto-sp13_S_contig2028:6245..8585+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2028.6669.1 ID=mRNA_Ecto-sp13_S_contig2028.6669.1|Name=mRNA_Ecto-sp13_S_contig2028.6669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2341bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2028:6245..8585+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTGAGAAAGGAAAAGAGGACGGCTCCGTCGCCAAAACCGTGGAGGA
GAAGGTGCAGGAGCTGGTTACGGACGCGAAAGAGGAGGCGGGTGGTTCCA
CCTCTGCTGCTGGCGTTTTAGACACTCTGAAGGGAGGCTTTCAAACAGTT
ACCGGCGGGGTGGGAACGGTCTGGCAAACGTTAGGCGAATGGAAAGATCA
AGGTAAAGAGTGTACTTGCGGGTGGCACACGTACCGCTCTAGAATGTTTG
TCGCGGTTCATGGAGGAACAAACTGCTGTCGGGTCGGTTCAAGTTTGTAA
TTTAGCACAGCAGCAGAGTTCTGAGAATAATCCATTCGCAGCGAGTCAAC
CAGAGGGCTTCTTTCTGAGGTGAAGTGGTTTTGTGTTGTGTCATGTTGGC
GAGCTTCGCTTGTTGGCATGTGGGGCAGTCTGCGTAGTCGTGCTTCCCTT
GGTCTAGCTATTGCAAAAGTCCAAGGTCAACGAATGTGTCTGTGACAAGT
GACAAGTCTGCGGCAAGAAATAACGGTTGTTGTGCAGCGCGCAGGATGTG
TGGGCCCTGGGAAGGGTGTAGCCGCACAGCAGTAGCGGTATTGAAAGTAC
AAGGTGCACACTTTTACCTTTTGGGTATCTCGAGAGCGCCACCAAGCGGG
TGATCTGCATGTGACTCTGAATCGCCATGTTGAAATCTGTGCTCTCTAGG
CTCGGTATGCGGTACGGCAGGAGCGGTCCCTAGTCAGCGCCGGTATGCGC
CCACACAGAAAGTTGACATGCTACATGTAGTCTGTACCTCGGCATGTACC
GGCGCTGATCATGGTACAGATCCACTCGGTGAACTGCGGTGTTTGCCCGC
CGATAACACCGGCACTACAAACCGGCACCAATAAACCAATAAACACGGAC
ACCTGTACTGCTTGTACATTGTACTGATGTGGATACCGTACGTTGCACAA
GATATCACACCCCCTGGACCGATTTTCAATTTTCAACGCTCGATTGCTCC
GACTTGTTGTAGTTACAACAGAAACAGCAGTAGTGGCGGCGCCGAAAATG
GCGGGAGGCGTTGGAACCGCCTCGTCGAAAGCTTTCCGAACACGCGTCAT
TTGACTTCGGCATCTCCTTCGTCGTGGAGTAATCGGGCCTTGAAAATCGG
TCCAGCGGGTGTGGTATCCTATCCGACCTACGGTAGGAAGTCCAACTTGC
AAGTCCATGCATGCTCAACGACTGCCGTGTGAGGGAAGTGACAAGAGCCG
ACCGCTGGGTTGCGTGCAACCCAACCCCCATTTGGAACCGACCCTTACTC
CCAAGCAATTGCAGCAAAGATCAAGGTTAATTGAAACATGTGCATACAAC
ACTCAGTGGGCCCGTGTGCACGTCGTTAGTCGCAAATGGGAACGGAGGGG
CCCATGATAGTATGGACGGAAAATGAAGTGAAATTGTGCTAGGGGCCACA
TCCAGGGAGGGAGCCATCCGCCTCGGGCGGGGCTCTACTGCACCACATCA
AGCCAACACGACTGGTCATGCCTTAGGTCTCAATCGTGAAGCTCCTAAAT
GTTTTGCGTTCACGACATAACGGAGGGTCGGGTCTGGATGCCTTAAGCAG
CGTGTTCTTCCCTCTGGGGAAAGAGGTTTGTTTTTTGTTGCTGGTCAAGT
GTGTTACTCTTCGCCGGCATCGCTCCGTCTTGTTTGATCGCTTACTTTCT
GCCTCGCCCAAGGTTCGAACTTGACCAAAGAGGTAACATGAAAACCCCAA
TGAACAGGAACTCCGTTGAGAAAAATGTTCAAGACGGCACGGTTGGAGCT
AGAAGATACCGCAGCGAAGGCACGAGAGAGGGCCGCCTGCAGGCAGACGA
AGATGAGGGAGAACTTTCAGAAGATGGCCGAGGAGAGGCAGGCGCGTTTC
AAGGAGTTCGACAAGTCAGGGGGTGAGAGCAAAAGAGAGAGATAGAGGCG
CACGGCGTTGTTGTTGTTGTTATGGTTGTTGGTCGTGGTAGCAGTAGCGG
TAGTGGTAGTGACCGTGCTTTGTGGTAAAATGGCGTGGGTTTTGGTAGTG
TGCTGGTGGAATGTTTTGATCCCATTTCTCAAATGGCAAGGACTAATTAC
CAGTGAGTTTTGGATATCTACATTTCTTTACATCTCCGGTACGGTACACA
AATTGAGGTAAACAGTCCCCTGCTCGTTTTCGCTCACTCTTTATGAAATG
CGACTACTGTACCCAGCGTGGAGCTCACGAGTTATGAACAGGCGCCGTGT
GCTGACTGTCTGCTATGGCTCTCTCCTCCTCCTCCTTCTCATTATCATGG
CCTTTTGCGTGTTGTCGGCGTCGATTATGATTGGACGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2028:6245..8585+

>mRNA_Ecto-sp13_S_contig2028.6669.1 ID=mRNA_Ecto-sp13_S_contig2028.6669.1|Name=mRNA_Ecto-sp13_S_contig2028.6669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2028:6245..8585+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTGAGAAAGGAAAAGAGGACGGCTCCGTCGCCAAAACCGTGGAGGA
GAAGGTGCAGGAGCTGGTTACGGACGCGAAAGAGGAGGCGGGTGGTTCCA
CCTCTGCTGCTGGCGTTTTAGACACTCTGAAGGGAGGCTTTCAAACAGTT
ACCGGCGGGGTGGGAACGGTCTGGCAAACGTTAGGCGAATGGAAAGATCA
AGGAACTCCGTTGAGAAAAATGTTCAAGACGGCACGGTTGGAGCTAGAAG
ATACCGCAGCGAAGGCACGAGAGAGGGCCGCCTGCAGGCAGACGAAGATG
AGGGAGAACTTTCAGAAGATGGCCGAGGAGAGGCAGGCGCGTTTCAAGGA
GTTCGACAAGTCAGGGGCGTGGAGCTCACGAGTTATGAACAGGCGCCGTG
TGCTGACTGTCTGCTATGGCTCTCTCCTCCTCCTCCTTCTCATTATCATG
GCCTTTTGCGTGTTGTCGGCGTCGATTATGATTGGACGTTGA
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