mRNA_Ecto-sp13_S_contig20276.6665.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20276.6665.1
Unique NamemRNA_Ecto-sp13_S_contig20276.6665.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Match: D7FHI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI6_ECTSI)

HSP 1 Score: 417 bits (1073), Expect = 2.350e-142
Identity = 294/331 (88.82%), Postives = 306/331 (92.45%), Query Frame = 1
Query:   25 SIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFSVGTDIDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAIALXXXXXXXXXXLDVLSASVFSGLAXXXXXXXXXXXXXXXSLEPAD-PAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLENDGSGSFAEGRDIGLLDSARNVVAVDLDNDGDVDLVACDGVGGHIVWYDNMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLIEIDDDDGGSDATGTTATPAPXXAVTPSPDDVTSE 1014
            SIDVGDLNGDGSPDVVVAF T+FQLTWFSN+DGLG+FSVGTDIDTYEDGD +R V VADLD DGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAI L          LDV+SASVFSGLAXXXXXXXXXXXXXXX  EPAD PAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLENDG GSFAEGRD+GLLDSARNVVAVDLDNDGD+DL+AC+ VGGHIVWY+N XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLIEIDDDDGGSDATGTTATPAPXX   PSPDDVT++
Sbjct:    5 SIDVGDLNGDGSPDVVVAFQTTFQLTWFSNLDGLGEFSVGTDIDTYEDGDQSRSVKVADLDGDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAITLALADLDGDDDLDVISASVFSGLAXXXXXXXXXXXXXXXXXEPADDPAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLENDGLGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLLACENVGGHIVWYENTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLIEIDDDDGGSDATGTTATPAPXXXXXPSPDDVTTD 335          
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Match: D7FHI7_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI7_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 2.600e-129
Identity = 217/252 (86.11%), Postives = 229/252 (90.87%), Query Frame = 1
Query:    1 ASGYGGASSIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFSVGTDIDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAIALXXXXXXXXXXLDVLSASVFSGLAXXXXXXXXXXXXXXXSLEPAD-PAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLENDGSGSFAEGRDIGLLDSARNVVAVDLDNDGDVDLVACDGVGGHIVWYDN 753
            ASGYGGA+SIDVGDLNGDGSPDVVVAF T+FQLTWFSN+ GLG+FSVG DIDTYEDGD +R V VADLD DGDLDVIMASKQGDRVTWYENTDGEATFA+GVDISTTADGAI L          LDV+SASVFSGLAXXXXXXXXXXXXXXX   PAD PAGGKDVVTADIDGDGD+DIISASFDGNHTAG+FPDGRILWLENDGSGSFAEGRD+GLLDSARNVVAVDLDNDGD+DLVACDGVGG IVWY+N
Sbjct:  107 ASGYGGAASIDVGDLNGDGSPDVVVAFQTTFQLTWFSNLYGLGEFSVGADIDTYEDGDQSRSVKVADLDGDGDLDVIMASKQGDRVTWYENTDGEATFAVGVDISTTADGAITLALADLDGDDDLDVISASVFSGLAXXXXXXXXXXXXXXXXXXPADDPAGGKDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLENDGSGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLVACDGVGGSIVWYEN 358          
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Match: D7FHI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI8_ECTSI)

HSP 1 Score: 342 bits (876), Expect = 2.710e-111
Identity = 244/338 (72.19%), Postives = 258/338 (76.33%), Query Frame = 1
Query:    1 ASGYGGASSIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFSVGTDIDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAIALXXXXXXXXXXLDVLSASVFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLENDGSGSFAEGRDIGLLDSARNVVAVDLDNDGDVDLVACDGVGGHIVWYDNMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLIEIDDDDGGSDATGTTATPAPXXAVTPSPDDVTSE 1014
            ASGYGGA SIDVGDL+GDGSPDVVVAF TSFQLTWFSN+DGLG+FSVGTDIDTYEDGDH+ +V VADLD DGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGA  L          LD++SASV SGLAXXXXXXXXXXXXXXX                             SFDGNHTAG+FPDGRILWLENDGSGSFAEG+DIGLL+SARNVVAVDLDNDGD+DLV CDGVGG IVWY+N                     XXXXXXXXXXXXXXXXXXXXXXXXXXXX LLIEI+DDDGGSDAT TTA      AV PSP DVTS+
Sbjct:  146 ASGYGGAGSIDVGDLDGDGSPDVVVAFQTSFQLTWFSNLDGLGEFSVGTDIDTYEDGDHSNFVKVADLDGDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAFTLALADLDGDDDLDIVSASVVSGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXSFDGNHTAGSFPDGRILWLENDGSGSFAEGKDIGLLESARNVVAVDLDNDGDIDLVTCDGVGGSIVWYENTDGTGNFSEVIITTDVGVYWLXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LLIEIEDDDGGSDATRTTA-----PAVAPSPTDVTSD 476          
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Match: D8LE48_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE48_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 1.890e-58
Identity = 146/236 (61.86%), Postives = 163/236 (69.07%), Query Frame = 1
Query:   25 SIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFSVGTDIDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAIALXXXXXXXXXXLDVLSASVFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDIGLLDSARNVVAVDLDNDGDVDLVACDGVG 729
            SIDVGDL+GDG PDV VAF  S  + WF N DG G F+ GTDIDT   G  +  V +AD+D DGDLDV+ A K GDRVTWYEN DGE TFA+G+D+STTADGA  L XXXXXXXXX             XXXXXXXXXXXXXXXSLE  +PA  KDVVT              S+DG+H + N+ DGRI W+EN DG G+F EG DI  LDSAR VV VDLDNDGDVDLVACD VG
Sbjct:   45 SIDVGDLDGDGFPDVAVAFQLSDHVVWFRNADGQGGFTTGTDIDTDAGGSPSN-VKLADVDGDGDLDVVSAWKTGDRVTWYEN-DGEGTFAIGLDLSTTADGAYGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLERGEPA--KDVVTXXXXXXXXXXXXXXSYDGSHASSNYYDGRIFWIENTDGEGTFGEGEDIDSLDSARIVVPVDLDNDGDVDLVACDNVG 276          
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Match: A0A6H5K481_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K481_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 1.370e-42
Identity = 102/222 (45.95%), Postives = 128/222 (57.66%), Query Frame = 1
Query:   19 ASSIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFSVGTDIDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAIALXXXXXXXXXXLDVLSASVFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTA-DIDGDGDMDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDIGLLDSARNVVAV 678
            A S+ V DLNGDG PDVVVAF  S  +TW+ N DGLG FS+G DI T  DG  A  V  AD+D DGD D+I  S   DRVTWYENTDGE TFA+G+DIS T+ GA             +D++ AS F                    ++ A  A G   V A D+DGDGD+D++S         G++ DGR+ W EN DG+G+FA G+DI +L S  + VAV
Sbjct:  104 AGSVAVADLNGDGFPDVVVAFPYSDTVTWYRNSDGLGSFSLGVDIATDTDG--AWVVKCADVDGDGDFDIISVSSFDDRVTWYENTDGEGTFAVGLDISATSSGADMAVAADIDGDEAVDIVVAS-FDDDRVTWFKNTDGKGAFALGVDLAQDANGATYVAAGDLDGDGDLDVVS---------GSYYDGRVTWYENTDGAGTFAVGQDIDILPSVASAVAV 313          
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Match: A0A3D9H7P0_9FLAO (Putative secreted protein (Por secretion system target) n=1 Tax=Winogradskyella eximia TaxID=262006 RepID=A0A3D9H7P0_9FLAO)

HSP 1 Score: 143 bits (360), Expect = 4.920e-34
Identity = 91/249 (36.55%), Postives = 135/249 (54.22%), Query Frame = 1
Query:   16 GASSIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFSVGTDIDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAIALXXXXXXXXXXLDVLSASVFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDIG-LLDSARNVVAVDLDNDGDVDLVACDGVGGHIVWYDNM 756
            GASS+   DL+GDG  DV+ A +   ++ W+ N+DG G F     I T  + D A  V  +D+D DGD+D++ AS+  +++ WYEN DG ATF     I++ A+GA+A+          LDV SAS+                     +   +    +DV  +DIDGDGDMD+IS    G++T        I W EN DG GSF+  + I  ++  A +V+A DLDNDGD+D+++   +   I WY+N+
Sbjct:  143 GASSVFASDLDGDGDIDVISASIFDDKIAWYENMDGQGSFGPQNVIST--NTDEAMSVYSSDIDGDGDMDILSASRNDNKIAWYENIDGLATFGTQQIITSNAEGALAVRSSDVDGDGDLDVFSASLDDNKIAWYENMDGQGAFGIQQIISTNADQVRDVSVSDIDGDGDMDVISTD-SGDNT--------ISWYENIDGLGSFSAQQIISKIVKQASSVLASDLDNDGDLDVISASYLDSKIAWYENI 380          
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Match: A0A1F3PQL1_9BACT (Por_Secre_tail domain-containing protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1F3PQL1_9BACT)

HSP 1 Score: 139 bits (350), Expect = 7.940e-33
Identity = 92/250 (36.80%), Postives = 128/250 (51.20%), Query Frame = 1
Query:   16 GASSIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFSVGTDIDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAIALXXXXXXXXXXLDVLSASV--FSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDIGLL-DSARNVVAVDLDNDGDVDLVACDGVGGHIVWYDN 753
            GA  +   D++GDG  DV+ A  T  ++ W+ N DG G F +   I T    D+AR V  ADLD DGD+DV+ AS+  D++ WYENTDG  TF +   ISTTA  A+++          +DVLSAS   +                    +   D      + +ADIDGDGDMD++SAS           D +I W EN DG+G F     I    + A++V + DLD DGD+D+++       I WY+N
Sbjct:  396 GARDVCCADIDGDGDMDVLSASSTDDKIAWYENTDGNGSFGIQQVITTV--ADNARSVYSADLDGDGDMDVLSASEDDDKIAWYENTDGNGTFGVQQIISTTAYYALSVYSADLDSDGDMDVLSASATEYEDKICWYENTDGNGTFGTQQIITTDAYYAVSIYSADIDGDGDMDVLSASSS---------DDKIAWYENTDGNGIFGPQNVITTAANGAQSVYSADLDGDGDMDVLSASFSDNKIAWYEN 634          
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Match: UPI0015CC037F (T9SS type A sorting domain-containing protein n=1 Tax=Winogradskyella costae TaxID=2697008 RepID=UPI0015CC037F)

HSP 1 Score: 137 bits (344), Expect = 6.330e-32
Identity = 84/248 (33.87%), Postives = 127/248 (51.21%), Query Frame = 1
Query:   22 SSIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFSVGTDIDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAIALXXXXXXXXXXLDVLSASVFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDIGLLD--SARNVVAVDLDNDGDVDLVACDGVGGHIVWYDNM 756
            +S  V D++GDG  DV+ A     ++ W+ N+DGLG F +G       +G     V  AD+D DGD+DV+ AS+  D + WYEN +G   F     I+T ADGA ++          +DV+SAS +                    +   +      + ++D+DGDGDMDI+SASF+ N         +I W EN DG G+F + + I   D   A +V A D+D DGD+D+++     G I W++N+
Sbjct:  402 TSTHVSDIDGDGDVDVLSASKGDGKIAWYENIDGLGSFDLGLQRTVISNGSEFNSVYSADIDGDGDMDVLSASRNSDVIAWYENINGLGNFGQQQQITTDADGAQSVYAIDIDGDGDMDVVSASAYDNKIAWYENTDGLGGFGSQQIITTNAEFAISLYSSDLDGDGDMDIVSASFNDN---------KIAWYENTDGQGNF-DSQQIITTDVLGASSVYAADIDGDGDMDILSTSTSEGKIDWFENI 639          
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Match: A0A519DFZ1_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A519DFZ1_9EURY)

HSP 1 Score: 136 bits (343), Expect = 8.550e-32
Identity = 92/249 (36.95%), Postives = 123/249 (49.40%), Query Frame = 1
Query:   16 GASSIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFS-VGTDIDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAIALXXXXXXXXXXLDVLSASVFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLENDGSG--SFAEGRDIGLLDSARNVVAVDLDNDGDVDLVACDGVGGHIVWYDN 753
            GA  + V D++GDG  D+V A +    + W+ N DG  D S    DIDT  + D+A  V VAD+D DGDLD++ AS   D + WYEN           DI+T+ADGAI +          LD++SASV                    +       G  DV  AD+DGDGD+DI+SAS+          D  I W ENDG+   S+         D+AR+V   DLD DGD+D+V+       I WY+N
Sbjct:  149 GAIDVHVADMDGDGDLDIVSASINDDTIAWYEN-DGAADPSWTAADIDT--NADYAYGVHVADMDGDGDLDIVSASINDDTIAWYENDGASDPSWTAADIATSADGAIDVHVADMDGDGDLDIVSASVTDDTIAWYENDGAADPSWSAADIATSVDGASDVHVADMDGDGDLDIVSASY---------VDSTIAWYENDGAADPSWTAADIATSADAARDVHVADLDGDGDLDIVSASAFDDTIAWYEN 385          
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Match: A0A1W9LJS4_9DELT (Cadherin_4 domain-containing protein (Fragment) n=1 Tax=Desulfobacteraceae bacterium IS3 TaxID=1934248 RepID=A0A1W9LJS4_9DELT)

HSP 1 Score: 135 bits (340), Expect = 2.030e-31
Identity = 89/248 (35.89%), Postives = 121/248 (48.79%), Query Frame = 1
Query:   16 GASSIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFSVGTDIDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAIALXXXXXXXXXXLDVLSASVFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDIGL-LDSARNVVAVDLDNDGDVDLVACDGVGGHIVWYDN 753
            GASS    D++GDG PDVV+A      + W+ N DG G+F     I    DG  A  V  AD+D DGD+DV+ AS   +++ WYENTDG+  F     IST A+ A+++           DV+SAS                      L   +  G   V   DIDGDGD D++SAS + N         +I W EN DG GSFA+   I    D   ++   D+D DGD D+++     G + WY+N
Sbjct:  285 GASSAIPADIDGDGDPDVVLASWNEDAIAWYENTDGKGNFGTEQIISVEADG--ASCVFAADVDGDGDIDVVSASAWDNKIAWYENTDGKGNFGSQKIISTDANWALSVFAGDIDGDGDADVVSASANDNKIAWYENTDGKGSFGTQKLISLEAEGASFVFAGDIDGDGDADVLSASANDN---------KIAWYENTDGKGSFAQQNTITTQADGVLSLSIADVDADGDSDVISASLNDGKVAWYEN 521          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHI6_ECTSI2.350e-14288.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHI7_ECTSI2.600e-12986.11N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
D7FHI8_ECTSI2.710e-11172.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LE48_ECTSI1.890e-5861.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K481_9PHAE1.370e-4245.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3D9H7P0_9FLAO4.920e-3436.55Putative secreted protein (Por secretion system ta... [more]
A0A1F3PQL1_9BACT7.940e-3336.80Por_Secre_tail domain-containing protein n=2 Tax=B... [more]
UPI0015CC037F6.330e-3233.87T9SS type A sorting domain-containing protein n=1 ... [more]
A0A519DFZ1_9EURY8.550e-3236.95Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]
A0A1W9LJS4_9DELT2.030e-3135.89Cadherin_4 domain-containing protein (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20276contigEcto-sp13_S_contig20276:2..3139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score419.9
Seed ortholog evalue1.2e-114
Seed eggNOG ortholog2880.D7FHI6
Model size1029
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
EggNOG OGs29QRV@1,2RX97@2759
Cds size1029
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463018.2936532-CDS-Ecto-sp13_S_contig20276:1..241681463018.2936532-CDS-Ecto-sp13_S_contig20276:1..24Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20276 2..24 +
1681463018.3036737-CDS-Ecto-sp13_S_contig20276:442..6691681463018.3036737-CDS-Ecto-sp13_S_contig20276:442..669Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20276 443..669 +
1681463018.3126936-CDS-Ecto-sp13_S_contig20276:1260..14981681463018.3126936-CDS-Ecto-sp13_S_contig20276:1260..1498Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20276 1261..1498 +
1681463018.3212042-CDS-Ecto-sp13_S_contig20276:1785..21131681463018.3212042-CDS-Ecto-sp13_S_contig20276:1785..2113Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20276 1786..2113 +
1681463018.3302417-CDS-Ecto-sp13_S_contig20276:2926..31391681463018.3302417-CDS-Ecto-sp13_S_contig20276:2926..3139Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20276 2927..3139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20276.6665.1prot_Ecto-sp13_S_contig20276.6665.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20276 2..3139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20276.6665.1

>prot_Ecto-sp13_S_contig20276.6665.1 ID=prot_Ecto-sp13_S_contig20276.6665.1|Name=mRNA_Ecto-sp13_S_contig20276.6665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=343bp
ASGYGGASSIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFSVGTD
IDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFAL
GVDISTTADGAIALALADLDGDGDLDVLSASVFSGLAWYENSNGSGAFSL
GVSLEPADPAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWL
ENDGSGSFAEGRDIGLLDSARNVVAVDLDNDGDVDLVACDGVGGHIVWYD
NMDGTGNFSEAIDIAIDVGVHSVIAVDLDGDGDIDIATATRDDAEVVWYE
NLLIEIDDDDGGSDATGTTATPAPTPAVTPSPDDVTSETRTTT
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mRNA from alignment at Ecto-sp13_S_contig20276:2..3139+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20276.6665.1 ID=mRNA_Ecto-sp13_S_contig20276.6665.1|Name=mRNA_Ecto-sp13_S_contig20276.6665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20276:2..3139+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTCCGGCTACGGTGGAGCATCGTAAGTGGATCGACACGCCTGTAGCTC CTCGCTCGCTTTGTGACCTTTGTCGGCCGTGTTTGTTCTTGTTTTTCTCT CGCGCGTGGTTGTCGCCGCTTTCAGTTGGGAAATTGGGTTCCTGTTGTTT TCCGTGATAAGGTAGCTTCGTCTACTCCTGAGACAGCACTCAATCGTGGG GGTGCTACATATTGAAAAACCCCTGGCTTCATCATTTCTGCGATTGCTGC GACCGCGAACCCTGCGTGGAGTTGCGGTTCTCTGACCCGCACAACATGAC ATACTACCACTGCCGGCCCTCCGTCGGCAAAGGCTGACAACCATAGACAA AACAAAACTGATCTCGTGAACCCGGCTACCAAATCTCATGCACATCGTAC TCTTGGAACACCTCCCGGCGCCGTTTCCTTCGCAAAATCAGATCAATTGA CGTCGGAGACCTGAATGGCGACGGCTCCCCTGATGTCGTCGTAGCCTTTC TGACTTCCTTTCAGTTGACGTGGTTTAGCAATGTCGACGGCCTGGGCGAT TTTTCGGTCGGCACTGACATCGATACGTATGAAGACGGGGATCACGCACG ATATGTCACGGTGGCGGATCTCGACGAGGATGGGGACTTAGACGTGATTA TGGCATCGAAACAAGGCGGTGAGCGTGCCTCGTACTTGAACAGCCGTTGA CTAGAAATCACTCATGAGTCTGATTTGTACCGTCATGCTTGGACATGTTG TTGGGAAATGATTGCCATTAGTTCCGTACGTATCGGTACTCTAACTCATC TCCGATGTGGTGCAGCTGTCCAAGGCACGAAAATGCTTGCCCAAAGCCCA GCCTTGAAATCTCACACCGGCCCCAACCAAACGGCCCGCACCCACACGGG GCGGGTTCGTTAGGCTAGAACGAAGAATCGTCTCTAAGTAGTAGTAGCAC GACGACAGAGGGATGTTTCGAAACGACCGCGGCGCTCTTGGGCCTGATCC TACGTGCCCGCGTGGACTCCGGCGCGGAGGGTGGGCATCAAGGTACATGG TTGAAGCATACGAGCTTGAGGCCATCAAACAAAGCAAACGCTCTGTAATG GATGGCAGTATGTATCTTGCCGTATTATTGGTGGCTGGTGTGGTTCTACC GTCGTTTGTCCCATGGATGCCTCCCAAGTCATCGCCAGATCCCGTGTTCG TGCTCCGCCCTATCCCGTCTCCAAACCGAGCCTATTCGCGCCGTCGCCGC CGTCGCCAGATCGAGTCACGTGGTACGAGAACACCGACGGGGAGGCGACG TTTGCGCTCGGCGTTGATATCTCAACGACCGCCGACGGTGCTATCGCACT GGCTTTGGCGGACTTGGACGGCGACGGCGATCTTGACGTCCTTTCGGCGT CCGTTTTTAGCGGGTTGGCGTGGTACGAGAACTCGAACGGGAGCGGGGCG TTTTCTCTGGGCGTGAGTTTGGAACCGGCCGACCCTGCTGGTGGAAAGTG AGTGAATGTTTGTGTTTGGAGGTATTGCTGTGTTTGATACGTCTGGTGAT GGTCTAGGTTCGGTCACATTGAGGTAGTGCTTCTGTTTTATTTGATCCTC GACTTTGCTCCCAGAGCAGGAGAAAGAGAATTAACAGGAGAGCTACAAAG CACCTCTTTACGTAAGCACGATAGCCCTTGTTGGTTCGGCAGGACGTATG CTTTCGCGATAACAGCAAGACGTATGTTGCCGCAATGGTTTTCGTCGAAA TGATTCATTGTATTGCCTCCCGTTTTCACAAAAGGGACGTCGTTACGGCG GACATCGACGGAGACGGAGACATGGACATCATCTCGGCGTCCTTCGACGG CAACCACACCGCCGGCAACTTTCCCGACGGCCGCATTCTCTGGCTCGAGA ACGACGGCTCGGGAAGCTTCGCGGAGGGGAGGGACATCGGCTTGCTCGAT TCTGCGAGGAACGTGGTGGCCGTGGACCTCGACAACGACGGGGACGTAGA TCTGGTGGCGTGCGACGGCGTCGGGGGGCACATCGTGTGGTACGACAACA TGGACGGGACGGGGAATTTCTCTGAGGCCATCGACATCGCCATCGACGTC GGGGTACATTCGGTGAGTGTTCCAGACAAGACAGTGCCGGCCAGCTTGTA AGAATATGTTCGTGAAAAACCGACGCTCAGATTTTAAGAAAAATGTCGGA CGAGACTGAGCATTGCGGCCGGCGCTACACTTATTCCTTCATAGAAGCCT TTGCTTGGCGTGGGGACAATACGCGGTTCGAGCCTCGCTCAAAATAGACG TTTCTTATGAGCGGATTGGCCCTGTTTTGTTGCAAAGGCTCCCTTCCGCT GCTGCTGTCGATGCCGCGCTCATCGCGCGCAAGGGCCCTATATTGCTGTT GCCTCCATCCAAACGCAGCAATATCAAGAGTTCCACTCGACGTAAGTACA AGGATGGAGCCAAAAATCAACGGTCTCCATCCAAACGGAGCAATATCGAG ACTTCATTCGACGAATAGTAAAGGACAGAAAACGTTCGAAAGGGTGTGAA TGAGAGCGCCCACAGCCAAGATATGCTGGGTTTCTCGCCGCCGGCAAAGT CTTTCTGACTGTTTCTGGGCATGGTACAACCTCATGGTTCCCACCACAGT GTGCCCTGTCAGCAGATACATTGCAATGGTTCAACGTCGAGAAACACGAG AGCCCAGCGCAAGCAGGGAGAGCGCAGAATCATGAACCCCCGTGGCTGAC GCATCACATGCATGCCCTCGTTCTCATCCTTTGTCCACGTACAACCCTGA CGAAATATCAGGCATGGTCCCGTTCTCAGCCTTGTCTTCGCACCCCTGAC GCAATGCCACGCACCACGTATGCCCCTTGTCCACGCAACTCCACCACCAT CTCAACAACGCTTCTCACCAATCAGGTGATCGCTGTTGACCTCGACGGTG ACGGCGACATCGATATAGCGACCGCAACGCGGGACGACGCCGAGGTGGTC TGGTACGAGAACCTCCTGATAGAAATCGATGATGACGATGGCGGCAGCGA TGCTACAGGAACGACAGCCACGCCGGCACCGACACCGGCCGTAACCCCGT CTCCGGATGACGTCACAAGTGAGACAAGAACCACAACT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20276:2..3139+

>mRNA_Ecto-sp13_S_contig20276.6665.1 ID=mRNA_Ecto-sp13_S_contig20276.6665.1|Name=mRNA_Ecto-sp13_S_contig20276.6665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1029bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20276:2..3139+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTCCGGCTACGGTGGAGCATCATCAATTGACGTCGGAGACCTGAATGG
CGACGGCTCCCCTGATGTCGTCGTAGCCTTTCTGACTTCCTTTCAGTTGA
CGTGGTTTAGCAATGTCGACGGCCTGGGCGATTTTTCGGTCGGCACTGAC
ATCGATACGTATGAAGACGGGGATCACGCACGATATGTCACGGTGGCGGA
TCTCGACGAGGATGGGGACTTAGACGTGATTATGGCATCGAAACAAGGCG
ATCGAGTCACGTGGTACGAGAACACCGACGGGGAGGCGACGTTTGCGCTC
GGCGTTGATATCTCAACGACCGCCGACGGTGCTATCGCACTGGCTTTGGC
GGACTTGGACGGCGACGGCGATCTTGACGTCCTTTCGGCGTCCGTTTTTA
GCGGGTTGGCGTGGTACGAGAACTCGAACGGGAGCGGGGCGTTTTCTCTG
GGCGTGAGTTTGGAACCGGCCGACCCTGCTGGTGGAAAGGACGTCGTTAC
GGCGGACATCGACGGAGACGGAGACATGGACATCATCTCGGCGTCCTTCG
ACGGCAACCACACCGCCGGCAACTTTCCCGACGGCCGCATTCTCTGGCTC
GAGAACGACGGCTCGGGAAGCTTCGCGGAGGGGAGGGACATCGGCTTGCT
CGATTCTGCGAGGAACGTGGTGGCCGTGGACCTCGACAACGACGGGGACG
TAGATCTGGTGGCGTGCGACGGCGTCGGGGGGCACATCGTGTGGTACGAC
AACATGGACGGGACGGGGAATTTCTCTGAGGCCATCGACATCGCCATCGA
CGTCGGGGTACATTCGGTGATCGCTGTTGACCTCGACGGTGACGGCGACA
TCGATATAGCGACCGCAACGCGGGACGACGCCGAGGTGGTCTGGTACGAG
AACCTCCTGATAGAAATCGATGATGACGATGGCGGCAGCGATGCTACAGG
AACGACAGCCACGCCGGCACCGACACCGGCCGTAACCCCGTCTCCGGATG
ACGTCACAAGTGAGACAAGAACCACAACT
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