mRNA_Ecto-sp13_S_contig20276.6665.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Match: D7FHI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI6_ECTSI) HSP 1 Score: 417 bits (1073), Expect = 2.350e-142 Identity = 294/331 (88.82%), Postives = 306/331 (92.45%), Query Frame = 1
Query: 25 SIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFSVGTDIDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAIALXXXXXXXXXXLDVLSASVFSGLAXXXXXXXXXXXXXXXSLEPAD-PAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLENDGSGSFAEGRDIGLLDSARNVVAVDLDNDGDVDLVACDGVGGHIVWYDNMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLIEIDDDDGGSDATGTTATPAPXXAVTPSPDDVTSE 1014
SIDVGDLNGDGSPDVVVAF T+FQLTWFSN+DGLG+FSVGTDIDTYEDGD +R V VADLD DGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAI L LDV+SASVFSGLAXXXXXXXXXXXXXXX EPAD PAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLENDG GSFAEGRD+GLLDSARNVVAVDLDNDGD+DL+AC+ VGGHIVWY+N XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLIEIDDDDGGSDATGTTATPAPXX PSPDDVT++
Sbjct: 5 SIDVGDLNGDGSPDVVVAFQTTFQLTWFSNLDGLGEFSVGTDIDTYEDGDQSRSVKVADLDGDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAITLALADLDGDDDLDVISASVFSGLAXXXXXXXXXXXXXXXXXEPADDPAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLENDGLGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLLACENVGGHIVWYENTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLIEIDDDDGGSDATGTTATPAPXXXXXPSPDDVTTD 335
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Match: D7FHI7_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI7_ECTSI) HSP 1 Score: 388 bits (996), Expect = 2.600e-129 Identity = 217/252 (86.11%), Postives = 229/252 (90.87%), Query Frame = 1
Query: 1 ASGYGGASSIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFSVGTDIDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAIALXXXXXXXXXXLDVLSASVFSGLAXXXXXXXXXXXXXXXSLEPAD-PAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLENDGSGSFAEGRDIGLLDSARNVVAVDLDNDGDVDLVACDGVGGHIVWYDN 753
ASGYGGA+SIDVGDLNGDGSPDVVVAF T+FQLTWFSN+ GLG+FSVG DIDTYEDGD +R V VADLD DGDLDVIMASKQGDRVTWYENTDGEATFA+GVDISTTADGAI L LDV+SASVFSGLAXXXXXXXXXXXXXXX PAD PAGGKDVVTADIDGDGD+DIISASFDGNHTAG+FPDGRILWLENDGSGSFAEGRD+GLLDSARNVVAVDLDNDGD+DLVACDGVGG IVWY+N
Sbjct: 107 ASGYGGAASIDVGDLNGDGSPDVVVAFQTTFQLTWFSNLYGLGEFSVGADIDTYEDGDQSRSVKVADLDGDGDLDVIMASKQGDRVTWYENTDGEATFAVGVDISTTADGAITLALADLDGDDDLDVISASVFSGLAXXXXXXXXXXXXXXXXXXPADDPAGGKDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLENDGSGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLVACDGVGGSIVWYEN 358
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Match: D7FHI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI8_ECTSI) HSP 1 Score: 342 bits (876), Expect = 2.710e-111 Identity = 244/338 (72.19%), Postives = 258/338 (76.33%), Query Frame = 1
Query: 1 ASGYGGASSIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFSVGTDIDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAIALXXXXXXXXXXLDVLSASVFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLENDGSGSFAEGRDIGLLDSARNVVAVDLDNDGDVDLVACDGVGGHIVWYDNMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLIEIDDDDGGSDATGTTATPAPXXAVTPSPDDVTSE 1014
ASGYGGA SIDVGDL+GDGSPDVVVAF TSFQLTWFSN+DGLG+FSVGTDIDTYEDGDH+ +V VADLD DGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGA L LD++SASV SGLAXXXXXXXXXXXXXXX SFDGNHTAG+FPDGRILWLENDGSGSFAEG+DIGLL+SARNVVAVDLDNDGD+DLV CDGVGG IVWY+N XXXXXXXXXXXXXXXXXXXXXXXXXXXX LLIEI+DDDGGSDAT TTA AV PSP DVTS+
Sbjct: 146 ASGYGGAGSIDVGDLDGDGSPDVVVAFQTSFQLTWFSNLDGLGEFSVGTDIDTYEDGDHSNFVKVADLDGDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAFTLALADLDGDDDLDIVSASVVSGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXSFDGNHTAGSFPDGRILWLENDGSGSFAEGKDIGLLESARNVVAVDLDNDGDIDLVTCDGVGGSIVWYENTDGTGNFSEVIITTDVGVYWLXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LLIEIEDDDGGSDATRTTA-----PAVAPSPTDVTSD 476
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Match: D8LE48_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE48_ECTSI) HSP 1 Score: 204 bits (519), Expect = 1.890e-58 Identity = 146/236 (61.86%), Postives = 163/236 (69.07%), Query Frame = 1
Query: 25 SIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFSVGTDIDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAIALXXXXXXXXXXLDVLSASVFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDIGLLDSARNVVAVDLDNDGDVDLVACDGVG 729
SIDVGDL+GDG PDV VAF S + WF N DG G F+ GTDIDT G + V +AD+D DGDLDV+ A K GDRVTWYEN DGE TFA+G+D+STTADGA L XXXXXXXXX XXXXXXXXXXXXXXXSLE +PA KDVVT S+DG+H + N+ DGRI W+EN DG G+F EG DI LDSAR VV VDLDNDGDVDLVACD VG
Sbjct: 45 SIDVGDLDGDGFPDVAVAFQLSDHVVWFRNADGQGGFTTGTDIDTDAGGSPSN-VKLADVDGDGDLDVVSAWKTGDRVTWYEN-DGEGTFAIGLDLSTTADGAYGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLERGEPA--KDVVTXXXXXXXXXXXXXXSYDGSHASSNYYDGRIFWIENTDGEGTFGEGEDIDSLDSARIVVPVDLDNDGDVDLVACDNVG 276
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Match: A0A6H5K481_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K481_9PHAE) HSP 1 Score: 164 bits (415), Expect = 1.370e-42 Identity = 102/222 (45.95%), Postives = 128/222 (57.66%), Query Frame = 1
Query: 19 ASSIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFSVGTDIDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAIALXXXXXXXXXXLDVLSASVFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTA-DIDGDGDMDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDIGLLDSARNVVAV 678
A S+ V DLNGDG PDVVVAF S +TW+ N DGLG FS+G DI T DG A V AD+D DGD D+I S DRVTWYENTDGE TFA+G+DIS T+ GA +D++ AS F ++ A A G V A D+DGDGD+D++S G++ DGR+ W EN DG+G+FA G+DI +L S + VAV
Sbjct: 104 AGSVAVADLNGDGFPDVVVAFPYSDTVTWYRNSDGLGSFSLGVDIATDTDG--AWVVKCADVDGDGDFDIISVSSFDDRVTWYENTDGEGTFAVGLDISATSSGADMAVAADIDGDEAVDIVVAS-FDDDRVTWFKNTDGKGAFALGVDLAQDANGATYVAAGDLDGDGDLDVVS---------GSYYDGRVTWYENTDGAGTFAVGQDIDILPSVASAVAV 313
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Match: A0A3D9H7P0_9FLAO (Putative secreted protein (Por secretion system target) n=1 Tax=Winogradskyella eximia TaxID=262006 RepID=A0A3D9H7P0_9FLAO) HSP 1 Score: 143 bits (360), Expect = 4.920e-34 Identity = 91/249 (36.55%), Postives = 135/249 (54.22%), Query Frame = 1
Query: 16 GASSIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFSVGTDIDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAIALXXXXXXXXXXLDVLSASVFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDIG-LLDSARNVVAVDLDNDGDVDLVACDGVGGHIVWYDNM 756
GASS+ DL+GDG DV+ A + ++ W+ N+DG G F I T + D A V +D+D DGD+D++ AS+ +++ WYEN DG ATF I++ A+GA+A+ LDV SAS+ + + +DV +DIDGDGDMD+IS G++T I W EN DG GSF+ + I ++ A +V+A DLDNDGD+D+++ + I WY+N+
Sbjct: 143 GASSVFASDLDGDGDIDVISASIFDDKIAWYENMDGQGSFGPQNVIST--NTDEAMSVYSSDIDGDGDMDILSASRNDNKIAWYENIDGLATFGTQQIITSNAEGALAVRSSDVDGDGDLDVFSASLDDNKIAWYENMDGQGAFGIQQIISTNADQVRDVSVSDIDGDGDMDVISTD-SGDNT--------ISWYENIDGLGSFSAQQIISKIVKQASSVLASDLDNDGDLDVISASYLDSKIAWYENI 380
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Match: A0A1F3PQL1_9BACT (Por_Secre_tail domain-containing protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1F3PQL1_9BACT) HSP 1 Score: 139 bits (350), Expect = 7.940e-33 Identity = 92/250 (36.80%), Postives = 128/250 (51.20%), Query Frame = 1
Query: 16 GASSIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFSVGTDIDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAIALXXXXXXXXXXLDVLSASV--FSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDIGLL-DSARNVVAVDLDNDGDVDLVACDGVGGHIVWYDN 753
GA + D++GDG DV+ A T ++ W+ N DG G F + I T D+AR V ADLD DGD+DV+ AS+ D++ WYENTDG TF + ISTTA A+++ +DVLSAS + + D + +ADIDGDGDMD++SAS D +I W EN DG+G F I + A++V + DLD DGD+D+++ I WY+N
Sbjct: 396 GARDVCCADIDGDGDMDVLSASSTDDKIAWYENTDGNGSFGIQQVITTV--ADNARSVYSADLDGDGDMDVLSASEDDDKIAWYENTDGNGTFGVQQIISTTAYYALSVYSADLDSDGDMDVLSASATEYEDKICWYENTDGNGTFGTQQIITTDAYYAVSIYSADIDGDGDMDVLSASSS---------DDKIAWYENTDGNGIFGPQNVITTAANGAQSVYSADLDGDGDMDVLSASFSDNKIAWYEN 634
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Match: UPI0015CC037F (T9SS type A sorting domain-containing protein n=1 Tax=Winogradskyella costae TaxID=2697008 RepID=UPI0015CC037F) HSP 1 Score: 137 bits (344), Expect = 6.330e-32 Identity = 84/248 (33.87%), Postives = 127/248 (51.21%), Query Frame = 1
Query: 22 SSIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFSVGTDIDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAIALXXXXXXXXXXLDVLSASVFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDIGLLD--SARNVVAVDLDNDGDVDLVACDGVGGHIVWYDNM 756
+S V D++GDG DV+ A ++ W+ N+DGLG F +G +G V AD+D DGD+DV+ AS+ D + WYEN +G F I+T ADGA ++ +DV+SAS + + + + ++D+DGDGDMDI+SASF+ N +I W EN DG G+F + + I D A +V A D+D DGD+D+++ G I W++N+
Sbjct: 402 TSTHVSDIDGDGDVDVLSASKGDGKIAWYENIDGLGSFDLGLQRTVISNGSEFNSVYSADIDGDGDMDVLSASRNSDVIAWYENINGLGNFGQQQQITTDADGAQSVYAIDIDGDGDMDVVSASAYDNKIAWYENTDGLGGFGSQQIITTNAEFAISLYSSDLDGDGDMDIVSASFNDN---------KIAWYENTDGQGNF-DSQQIITTDVLGASSVYAADIDGDGDMDILSTSTSEGKIDWFENI 639
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Match: A0A519DFZ1_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A519DFZ1_9EURY) HSP 1 Score: 136 bits (343), Expect = 8.550e-32 Identity = 92/249 (36.95%), Postives = 123/249 (49.40%), Query Frame = 1
Query: 16 GASSIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFS-VGTDIDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAIALXXXXXXXXXXLDVLSASVFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLENDGSG--SFAEGRDIGLLDSARNVVAVDLDNDGDVDLVACDGVGGHIVWYDN 753
GA + V D++GDG D+V A + + W+ N DG D S DIDT + D+A V VAD+D DGDLD++ AS D + WYEN DI+T+ADGAI + LD++SASV + G DV AD+DGDGD+DI+SAS+ D I W ENDG+ S+ D+AR+V DLD DGD+D+V+ I WY+N
Sbjct: 149 GAIDVHVADMDGDGDLDIVSASINDDTIAWYEN-DGAADPSWTAADIDT--NADYAYGVHVADMDGDGDLDIVSASINDDTIAWYENDGASDPSWTAADIATSADGAIDVHVADMDGDGDLDIVSASVTDDTIAWYENDGAADPSWSAADIATSVDGASDVHVADMDGDGDLDIVSASY---------VDSTIAWYENDGAADPSWTAADIATSADAARDVHVADLDGDGDLDIVSASAFDDTIAWYEN 385
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Match: A0A1W9LJS4_9DELT (Cadherin_4 domain-containing protein (Fragment) n=1 Tax=Desulfobacteraceae bacterium IS3 TaxID=1934248 RepID=A0A1W9LJS4_9DELT) HSP 1 Score: 135 bits (340), Expect = 2.030e-31 Identity = 89/248 (35.89%), Postives = 121/248 (48.79%), Query Frame = 1
Query: 16 GASSIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFSVGTDIDTYEDGDHARYVTVADLDEDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAIALXXXXXXXXXXLDVLSASVFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDIGL-LDSARNVVAVDLDNDGDVDLVACDGVGGHIVWYDN 753
GASS D++GDG PDVV+A + W+ N DG G+F I DG A V AD+D DGD+DV+ AS +++ WYENTDG+ F IST A+ A+++ DV+SAS L + G V DIDGDGD D++SAS + N +I W EN DG GSFA+ I D ++ D+D DGD D+++ G + WY+N
Sbjct: 285 GASSAIPADIDGDGDPDVVLASWNEDAIAWYENTDGKGNFGTEQIISVEADG--ASCVFAADVDGDGDIDVVSASAWDNKIAWYENTDGKGNFGSQKIISTDANWALSVFAGDIDGDGDADVVSASANDNKIAWYENTDGKGSFGTQKLISLEAEGASFVFAGDIDGDGDADVLSASANDN---------KIAWYENTDGKGSFAQQNTITTQADGVLSLSIADVDADGDSDVISASLNDGKVAWYEN 521 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20276.6665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig20276.6665.1 >prot_Ecto-sp13_S_contig20276.6665.1 ID=prot_Ecto-sp13_S_contig20276.6665.1|Name=mRNA_Ecto-sp13_S_contig20276.6665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=343bp ASGYGGASSIDVGDLNGDGSPDVVVAFLTSFQLTWFSNVDGLGDFSVGTDback to top mRNA from alignment at Ecto-sp13_S_contig20276:2..3139+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig20276.6665.1 ID=mRNA_Ecto-sp13_S_contig20276.6665.1|Name=mRNA_Ecto-sp13_S_contig20276.6665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20276:2..3139+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20276:2..3139+ >mRNA_Ecto-sp13_S_contig20276.6665.1 ID=mRNA_Ecto-sp13_S_contig20276.6665.1|Name=mRNA_Ecto-sp13_S_contig20276.6665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1029bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20276:2..3139+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |