mRNA_Ecto-sp13_S_contig20272.6663.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20272.6663.1
Unique NamemRNA_Ecto-sp13_S_contig20272.6663.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20272.6663.1 vs. uniprot
Match: D7G2Y9_ECTSI (Carboxyl-terminal protease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y9_ECTSI)

HSP 1 Score: 317 bits (813), Expect = 1.520e-105
Identity = 168/174 (96.55%), Postives = 170/174 (97.70%), Query Frame = 1
Query:    1 KVLKQVQDRRGKEEAYSAVKGMLKGLGDPYTRFLTPQEYDAVTGLARGGVAGVGLELASSPASSGNPLSVIVAGVVDGSPAEKAGVLTGDVLSAVDGDEASGADLDAVAGMLRGDPGSGVRLDVRRGGKAFAFPLTRAQFKYQGVRSEVRSSGGQKVGIVSIKVFSKDTFEDVR 522
            KVLKQVQDRRGKEEAYSAVKGMLKGLGDPYTRFLTPQEYDAVTGLARGGVAGVGLELASSPASSGNPLSVIVAGVV GSPAEKAGVLTGDVLSAVDG+EASG DLD VAGMLRGDPGSGVRLDVRRGGK FAFPLTRAQFKYQGVRSEVRS+GGQKVGIVSIKVFSKDTFEDVR
Sbjct:   87 KVLKQVQDRRGKEEAYSAVKGMLKGLGDPYTRFLTPQEYDAVTGLARGGVAGVGLELASSPASSGNPLSVIVAGVVGGSPAEKAGVLTGDVLSAVDGEEASGTDLDTVAGMLRGDPGSGVRLDVRRGGKTFAFPLTRAQFKYQGVRSEVRSNGGQKVGIVSIKVFSKDTFEDVR 260          
BLAST of mRNA_Ecto-sp13_S_contig20272.6663.1 vs. uniprot
Match: A0A6H5L405_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L405_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.140e-52
Identity = 95/99 (95.96%), Postives = 97/99 (97.98%), Query Frame = 1
Query:    1 KVLKQVQDRRGKEEAYSAVKGMLKGLGDPYTRFLTPQEYDAVTGLARGGVAGVGLELASSPASSGNPLSVIVAGVVDGSPAEKAGVLTGDVLSAVDGDE 297
            KVLKQVQDRRGKEEAY+A KGMLKGLGDPYTRFLTPQEYDAVTGLARGGVAGVGLELASSPASSGNPLSVIVAGVVDGSPA KAGVLTGDVLSAVDG+E
Sbjct:  164 KVLKQVQDRRGKEEAYAAAKGMLKGLGDPYTRFLTPQEYDAVTGLARGGVAGVGLELASSPASSGNPLSVIVAGVVDGSPAAKAGVLTGDVLSAVDGEE 262          
BLAST of mRNA_Ecto-sp13_S_contig20272.6663.1 vs. uniprot
Match: A0A6H5L348_9PHAE (TSPc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L348_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.060e-32
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 1
Query:  331 MLRGDPGSGVRLDVRRGGKAFAFPLTRAQFKYQGVRSEVRSSGGQKVGIVSIKVFSKDTFEDVR 522
            MLRGDPGSGVRLDVRRGGKAFAF LTRAQFKYQGVRSEVRSSGGQKVGIVSIKVFSKDTFEDVR
Sbjct:    1 MLRGDPGSGVRLDVRRGGKAFAFLLTRAQFKYQGVRSEVRSSGGQKVGIVSIKVFSKDTFEDVR 64          
BLAST of mRNA_Ecto-sp13_S_contig20272.6663.1 vs. uniprot
Match: A0A2T1GBN8_9CYAN (Peptidase S41 n=2 Tax=Chamaesiphon TaxID=217161 RepID=A0A2T1GBN8_9CYAN)

HSP 1 Score: 115 bits (289), Expect = 2.510e-27
Identity = 63/166 (37.95%), Postives = 99/166 (59.64%), Query Frame = 1
Query:   28 RGKEEAYSAVKGMLKGLGDPYTRFLTPQEYDAVTGLARGGVAGVGLELASSPASSGNPLSVIVAGVVDGSPAEKAGVLTGDVLSAVDGDEASGADLDAVAGMLRGDPGSGVRLDVRRGGKA-FAFPLTRAQFKYQGVRSEVRSSGGQKVGIVSIKVFSKDTFEDVR 522
            R ++EAY A++  LK LGDPYTRF+ PQ++ ++     G ++GVG++L ++P +      ++VA  ++ SPA KAG+  GD + A+DG       L+   G++RG+ G  V L + RG  + F  PLTRAQ +   V SEV+  G  KVG + +  FS  + E ++
Sbjct:   84 RNRQEAYVAIRTTLKKLGDPYTRFMDPQQFQSLNNQTSGEMSGVGIKLEANPRTK----QLVVAEAIENSPAAKAGIKAGDAIVAIDGKSTKNMTLENAIGLIRGEIGKSVTLKIARGSSSPFDVPLTRAQIEVASVFSEVKQEGKLKVGYIRLSEFSSHSSEQMQ 245          
BLAST of mRNA_Ecto-sp13_S_contig20272.6663.1 vs. uniprot
Match: A0A7S0LFN1_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LFN1_9EUKA)

HSP 1 Score: 115 bits (287), Expect = 4.570e-27
Identity = 72/164 (43.90%), Postives = 98/164 (59.76%), Query Frame = 1
Query:   40 EAYSAVKGMLKGLGDPYTRFLTPQEYDAVTGLARGGVAGVGLELASSPAS-SGNPLSVIVAGVVDGSPAEKAGVLTGDVLSAVDGDEASGADLDAVAGMLRGDPGSGVRLDVRRGG--KAFAFPLTRAQFKYQGVRSEVRSSGGQKVGIVSIKVFSKDTFEDVR 522
            +AY+ ++ ML  LGD YTRFLTP  YDA+   A G VAG+G+EL +  A+  G   +V++  VV   PA+++GVLTGDV+  VD +E  G   + VA  +RG  GS +RL + R G  +     + RA  K   V S++ +  GQK GIV IK FS  T  DVR
Sbjct:  112 DAYAEIRTMLSSLGDKYTRFLTPPMYDALFSQATGDVAGIGVELMTQEATVPGGKTAVLINSVVPEGPADRSGVLTGDVVVDVDSNEVGGLSAEEVAARVRGPAGSKLRLVLEREGSDEPSIKLIERAAVKLDAVTSQLSTISGQKTGIVRIKAFSTATAADVR 275          
BLAST of mRNA_Ecto-sp13_S_contig20272.6663.1 vs. uniprot
Match: A0A7S1YKD9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YKD9_9STRA)

HSP 1 Score: 115 bits (289), Expect = 4.750e-27
Identity = 68/166 (40.96%), Postives = 99/166 (59.64%), Query Frame = 1
Query:   37 EEAYSAVKGMLKGLGDPYTRFLTPQEYDAVTGLARGGVAGVGLELASSPASSGNPLSVIVAGVVDGSPAEKAGVLTGDVLSAVDGDEASGADLDAVAGMLRGDPGSGVRLDVRRGGKAFAFPLT--RAQFKYQGVRSEVRS---SGGQKVGIVSIKVFSKDTFEDV 519
            E+ Y  ++ ML  L DPYTRFLTP +Y+++T  A+GG AG+G+ L + P+S      V+VA  V+G PAEKAGV  GDV+  VDG + + +  + VA   RG+ G+ + + +R  G     PLT  RAQ K   V++ + S   +G  KVG + I  FS++T   V
Sbjct:  191 EKVYDIIRTMLSALNDPYTRFLTPDQYESLTAYAKGGSAGIGVSLIADPSSG----QVVVANTVEGGPAEKAGVQAGDVIVEVDGMDVTSSSAEVVAAKCRGEVGANLNIAIRPQGGKKVVPLTITRAQVKVNPVQASMISLNNNGNSKVGYIRISGFSQETTSQV 352          
BLAST of mRNA_Ecto-sp13_S_contig20272.6663.1 vs. uniprot
Match: A0A4D9CRG9_9STRA (PDZ domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CRG9_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.850e-26
Identity = 69/161 (42.86%), Postives = 96/161 (59.63%), Query Frame = 1
Query:   40 EAYSAVKGMLKGLGDPYTRFLTPQEYDAVTGLARGGVAGVGLELASSPASSGNPLSVIVAGVVDGSPAEKAGVLTGDVLSAVDGDEASGADLDAVAGMLRGDPGSGVRLDVR-RGGKAFAFPLTRAQFKYQGVRSEVRSSGGQKVGIVSIKVFSKDTFEDV 519
            + Y  +K ML+ LGDPYTRFL P +YD++ GLA G VAGVG+ L   PA+      +  A V  GSPAE AG+  GD L  VDG   +G  +D  A +LRG  G+ V +  R +GG++    +TR   K Q V +   + GG+KVG++ I+ FS+ T + V
Sbjct:  176 QVYEGIKAMLEPLGDPYTRFLPPSQYDSLFGLATGSVAGVGVSLQIDPATQ----ELTAAEVEKGSPAEAAGLRAGDKLLYVDGQATTGLLVDDCANLLRGPAGTKVGVVARGKGGESKDVIITRQLIKIQSVEALTANKGGKKVGVIRIRSFSQTTADTV 332          
BLAST of mRNA_Ecto-sp13_S_contig20272.6663.1 vs. uniprot
Match: UPI0019C1241B (S41 family peptidase n=1 Tax=Gloeobacterales cyanobacterium ES-bin-141 TaxID=2812628 RepID=UPI0019C1241B)

HSP 1 Score: 111 bits (278), Expect = 7.920e-26
Identity = 70/174 (40.23%), Postives = 105/174 (60.34%), Query Frame = 1
Query:   10 KQVQDRR--GKEEAYSAVKGMLKGLGDPYTRFLTPQEYDAVTGLARGGVAGVGLELASSPASSGNPLSVIVAGVVDGSPAEKAGVLTGDVLSAVDGDEASGADLDAVAGMLRGDPGSGVRLDVRRGGKA-FAFPLTRAQFKYQGVRSEVRSSGGQKVGIVSIKVFSKDTFEDVR 522
            KQ+ +R    KE+AY A++  LK LGDPYTRFL P+E+ A+     G + GVGL L +SP    N L VI++  + GSPA +AGV   D L AVD    +G  LD V+ ++RGD G+ V L V RG K   +F +TRA  +   V++ ++   G+K+G + ++ FS+    +++
Sbjct:   76 KQLLEREYASKEDAYKAIRAALKELGDPYTRFLDPREFQALKDQTSGELVGVGLTLGASPT---NKLPVIMS-TLKGSPATRAGVQAKDQLVAVDDKPTTGVPLDKVSSLIRGDSGTKVTLTVLRGDKQKLSFTITRAPIELPAVQAVLKEEDGKKLGYIQLQEFSEKATPEMK 245          
BLAST of mRNA_Ecto-sp13_S_contig20272.6663.1 vs. uniprot
Match: P73458_SYNY3 (Carboxyl-terminal protease n=8 Tax=Bacteria TaxID=2 RepID=P73458_SYNY3)

HSP 1 Score: 110 bits (276), Expect = 1.460e-25
Identity = 56/168 (33.33%), Postives = 99/168 (58.93%), Query Frame = 1
Query:   19 QDRRGKEEAYSAVKGMLKGLGDPYTRFLTPQEYDAVTGLARGGVAGVGLELASSPASSGNPLSVIVAGVVDGSPAEKAGVLTGDVLSAVDGDEASGADLDAVAGMLRGDPGSGVRLDVRRGGKAFAFPLTRAQFKYQGVRSEVRSSGGQKVGIVSIKVFSKDTFEDVR 522
            +D + +EEAY+A++ ML+ L DPYTRF++P E+ ++     G + GVG+++     +      ++V   ++ +PA  AG+L+ DV++ +DG    G ++D    ++RG PG+ V L + R G+A  +PLTR   +   VR++V    G +VG + +  FS    E++R
Sbjct:   75 RDYKNQEEAYTAIREMLEKLNDPYTRFMSPDEFQSMRIDTSGELTGVGIQITQDQDTK----KIVVVAPIEDTPAYNAGILSKDVITKIDGKSTDGMEVDDAVKLIRGKPGTSVVLTIEREGQAIEYPLTRTLIEIHPVRAQVEDINGARVGYIRLNQFSAQASEEMR 238          
BLAST of mRNA_Ecto-sp13_S_contig20272.6663.1 vs. uniprot
Match: A0A7C3PHE3_9CYAN (PDZ domain-containing protein n=1 Tax=Oscillatoriales cyanobacterium SpSt-418 TaxID=2282169 RepID=A0A7C3PHE3_9CYAN)

HSP 1 Score: 110 bits (276), Expect = 1.520e-25
Identity = 61/163 (37.42%), Postives = 98/163 (60.12%), Query Frame = 1
Query:   34 KEEAYSAVKGMLKGLGDPYTRFLTPQEYDAVTGLARGGVAGVGLELASSPASSGNPLSVIVAGVVDGSPAEKAGVLTGDVLSAVDGDEASGADLDAVAGMLRGDPGSGVRLDVRRGGKAFAFPLTRAQFKYQGVRSEVRSSGGQKVGIVSIKVFSKDTFEDVR 522
            KEEAY A++ MLK L DPYTRF+ PQEY  +     G + GVG++LA+   +      + V   ++ SPA +AG+L  D++S++DG    G D++    ++RG PG+ V L ++RG +   F LTRA+ +   V++ V+ S   +VG + +  FS ++  D+R
Sbjct:   80 KEEAYKAIREMLKKLDDPYTRFMDPQEYRNMQIDTSGELTGVGIQLAADEKTK----KLTVVSPIEDSPASRAGILAKDIISSIDGKSTEGMDVNQAVTLIRGQPGTKVILGIQRGEEQLKFELTRARIELHAVKASVQQSPEGQVGYIRLTQFSANSPSDMR 238          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20272.6663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2Y9_ECTSI1.520e-10596.55Carboxyl-terminal protease n=1 Tax=Ectocarpus sili... [more]
A0A6H5L405_9PHAE1.140e-5295.96PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L348_9PHAE1.060e-3298.44TSPc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A2T1GBN8_9CYAN2.510e-2737.95Peptidase S41 n=2 Tax=Chamaesiphon TaxID=217161 Re... [more]
A0A7S0LFN1_9EUKA4.570e-2743.90Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S1YKD9_9STRA4.750e-2740.96Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A4D9CRG9_9STRA2.850e-2642.86PDZ domain-containing protein n=2 Tax=Monodopsidac... [more]
UPI0019C1241B7.920e-2640.23S41 family peptidase n=1 Tax=Gloeobacterales cyano... [more]
P73458_SYNY31.460e-2533.33Carboxyl-terminal protease n=8 Tax=Bacteria TaxID=... [more]
A0A7C3PHE3_9CYAN1.520e-2537.42PDZ domain-containing protein n=1 Tax=Oscillatoria... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20272contigEcto-sp13_S_contig20272:406..2798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score318.5
Seed ortholog evalue1.9e-84
Seed eggNOG ortholog2880.D7G2Y9
Preferred nameCTPA
Model size525
KEGG koko:K03797
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009579,GO:0016787,GO:0019538,GO:0031977,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044436,GO:0044444,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Exons4
EggNOG free text desc.serine-type peptidase activity
EggNOG OGs2QSWI@2759,COG0793@1
Ec32 ortholog descriptioncarboxyl-terminal protease
Ec32 orthologEc-09_004350.1
EC3.4.21.102
Cds size525
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463018.1111114-CDS-Ecto-sp13_S_contig20272:405..5161681463018.1111114-CDS-Ecto-sp13_S_contig20272:405..516Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20272 406..516 +
1681463018.1256742-CDS-Ecto-sp13_S_contig20272:894..10801681463018.1256742-CDS-Ecto-sp13_S_contig20272:894..1080Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20272 895..1080 +
1681463018.144439-CDS-Ecto-sp13_S_contig20272:1743..18691681463018.144439-CDS-Ecto-sp13_S_contig20272:1743..1869Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20272 1744..1869 +
1681463018.1568902-CDS-Ecto-sp13_S_contig20272:2696..27981681463018.1568902-CDS-Ecto-sp13_S_contig20272:2696..2798Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20272 2697..2798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20272.6663.1prot_Ecto-sp13_S_contig20272.6663.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20272 406..2798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20272.6663.1

>prot_Ecto-sp13_S_contig20272.6663.1 ID=prot_Ecto-sp13_S_contig20272.6663.1|Name=mRNA_Ecto-sp13_S_contig20272.6663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=175bp
KVLKQVQDRRGKEEAYSAVKGMLKGLGDPYTRFLTPQEYDAVTGLARGGV
AGVGLELASSPASSGNPLSVIVAGVVDGSPAEKAGVLTGDVLSAVDGDEA
SGADLDAVAGMLRGDPGSGVRLDVRRGGKAFAFPLTRAQFKYQGVRSEVR
SSGGQKVGIVSIKVFSKDTFEDVR*
back to top

mRNA from alignment at Ecto-sp13_S_contig20272:406..2798+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20272.6663.1 ID=mRNA_Ecto-sp13_S_contig20272.6663.1|Name=mRNA_Ecto-sp13_S_contig20272.6663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20272:406..2798+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTCCTGAAACAAGTACAAGACCGCCGTGGGAAAGAAGAGGCGTATTC CGCCGTGAAGGGGATGCTAAAAGGCCTCGGGGATCCCTACACGCGCTTTC TGACGCCGCAGGTGGTTGTTGTTGTTGTTGTTGTTTTGTTCTCGTTCTTT TTCTTGTCCTGGTCCTTGTTCTTGATGTTGATTGTCGTTCCCATTCTTGT CCTTGTTCTCGTTCTCGTTGTTGTTCTTCTTGTTCTTGTTCTTGTTCATG TTCTTGTTTTCGTTCTTTTCCTTGGGTGTTGTTCTTGTCGTCGTCGTCGT CGTCGTCGTCGTCGTCGTCGTTGTTGTTGCTGGTTGTGGCTGTTGTCGCT GTTACTGATGCCGTTACTCTTCTACGCTGTTCCTCTGCTTCTTGTTAAGT CACGTCATGTCGTGTGACAGCCGCCTTGTTCACATCCAGGGCTCCCTCCC TGCCACCTTGCTACTTCTCCAACACCCGGCCCTCCACAGGAATACGACGC AGTCACCGGTCTCGCTCGCGGAGGCGTGGCTGGGGTGGGGCTGGAGCTTG CCTCGTCCCCGGCCTCATCAGGCAATCCCCTATCGGTGATAGTGGCGGGG GTGGTAGACGGGTCTCCCGCAGAGAAGGCTGGCGTTCTGACGGGCGACGT TTTATCGGCAGTGGATGGAGATGAGGTGTGTGGGTGAATTTTGAAATAGT TGTTCTCGTTCCGATGGGGGGGGTGGAGGACTACCTTTCGCTTGTGTCTG CCTGACCGAGCGTGTTTGCGGTGTCCTCATTTGTTTTTTTGTTGTCACTC GGGCGGGCTCCCTCCCGGGCGTCTTACACAGAAAAGAAGCGACTCAGTTT CCTTTATGCTAGTGAGAAACACCCCCAAGACCACAAGAACCTCGCGCGTC ATGCCGACCATACCTATATGATCCACGTAGCACCTAGGAAGCCCCGGAGA TAAGTTTACTCTGCCGAGCACCCCCACCCAACTCCCGGTTTCCTATCTGC CGAGAGAGAGAAGGAGTGAATGTAAACCGTCTAGTGAGAGGGGAACTCGG AAGGTTTTGGAGCTTCTACTACGTCGGGCATCGCACGAATGTTTGACGTC CAACAGTACAGAGAGCGGGATACAGAAACAGCCACACACACATACACTGA GAGAGAGGTGGAGAGAGACATGTACACAGAGAGGTAGAGCGAGAGAAAAA CCCAAATGCAGTGAAGAGAGGGAGGACGTATAGTTCAAGAGAGGGAGAGG GGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAAACCACGAGCGTTCGTTGTTGCAAACCCTTGCAGGCTTCGGGAGCA GACCTGGACGCGGTCGCTGGGATGCTGAGGGGGGACCCGGGTTCGGGGGT ACGGCTGGACGTTCGGAGGGGGGGAAAGGCGTTCGCCTTCCCTCTCACGC GGGCACAGTTTAAGGTGACTACGCGTAGTTGTTGGTAATTTTTGGAATTG GCGGTGCGATGAGTGCAATGCTCCCCAACGTGACTAGTTGTTGATACTTT CGGGATTTGCGGCGCGAAGAATGTACTGCTCCTCAAGGTGACTGCTTGTT GATACTTCTGGGATTTGCGGTGGGATAAATGTCCTGCTCTTCCTCGACGC AGGTGTTGCATTGGTGGGAATTATCTAGCCTAGCGCAAGGATAATCCTTG AGATAGTCGTAGGTGATGCATGAACGCGGGGAGGGGGCAAGCCGGTGTTT TTTGCCTCTCGCCGACGATAACGAGACAGTAGTGCTAGGCTGGCATGGTC GCGTCGTTGGGTACAGGTGTAATGTTCTTCACGTGTCCAATACACCATCC GCAGAGTGTCGACGTATCATCCATCGCTATGGAGAGAATCACTACCGCGA TACCGGCTACAGTCTAGGAGACGGTGGGGATATTCTACAACCATGATATT TTTCTCTTACAAAGACGGCGTTGTGTTACGCATGTTTTGCGTGGGCGGGA GAGGCGAATTTTACTCTCTTGGACATGTCCGTACTTTCTCTTGCATGATC TATTGGTGAAGACGAGACCGTTACGAAGACCGTTCCGCAGGGCTGCAACG CCGAGGGTGGCCCCACAAGAAATAGCGCTAATGGCAGGTTTAGTAGTCCT TTCGTCTCCAAGGAGTTTTCGCTCTTCGTGGCCCACTAAGACGAAAACCA AAGCGAGTTTCCCCCCGTCCTGGTTATTCTGAGGCAAGAATTAAACCCAC GTTTGCTTTTTTGTTTTTTCTGGCACGTTGATGACTGGCAGTACCAAGGG GTGAGGTCGGAGGTGCGAAGTAGCGGGGGGCAGAAGGTGGGCATCGTCTC GATCAAGGTGTTCTCCAAGGATACCTTCGAGGACGTCAGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20272:406..2798+

>mRNA_Ecto-sp13_S_contig20272.6663.1 ID=mRNA_Ecto-sp13_S_contig20272.6663.1|Name=mRNA_Ecto-sp13_S_contig20272.6663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20272:406..2798+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTCCTGAAACAAGTACAAGACCGCCGTGGGAAAGAAGAGGCGTATTC
CGCCGTGAAGGGGATGCTAAAAGGCCTCGGGGATCCCTACACGCGCTTTC
TGACGCCGCAGGAATACGACGCAGTCACCGGTCTCGCTCGCGGAGGCGTG
GCTGGGGTGGGGCTGGAGCTTGCCTCGTCCCCGGCCTCATCAGGCAATCC
CCTATCGGTGATAGTGGCGGGGGTGGTAGACGGGTCTCCCGCAGAGAAGG
CTGGCGTTCTGACGGGCGACGTTTTATCGGCAGTGGATGGAGATGAGGCT
TCGGGAGCAGACCTGGACGCGGTCGCTGGGATGCTGAGGGGGGACCCGGG
TTCGGGGGTACGGCTGGACGTTCGGAGGGGGGGAAAGGCGTTCGCCTTCC
CTCTCACGCGGGCACAGTTTAAGTACCAAGGGGTGAGGTCGGAGGTGCGA
AGTAGCGGGGGGCAGAAGGTGGGCATCGTCTCGATCAAGGTGTTCTCCAA
GGATACCTTCGAGGACGTCAGGTGA
back to top