mRNA_Ecto-sp13_S_contig20268.6661.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20268.6661.1
Unique NamemRNA_Ecto-sp13_S_contig20268.6661.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20268.6661.1 vs. uniprot
Match: A0A6H5KHD0_9PHAE (BING4CT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHD0_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.690e-28
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    4 QVHCLREHVEPRRLEFLPYHFLLGSVGRTGYVKYTDISTGQLVAEMGSKLGACD 165
            +VHCLREHVEPRRLEFLPYHFLLGSVGRTGYVKYTDISTGQLVAEMGSKLGACD
Sbjct:  285 EVHCLREHVEPRRLEFLPYHFLLGSVGRTGYVKYTDISTGQLVAEMGSKLGACD 338
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20268.6661.1 vs. uniprot
Match: A0A7S1C2V6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C2V6_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 5.610e-20
Identity = 37/55 (67.27%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 VQVHCLREHVEPRRLEFLPYHFLLGSVGRTGYVKYTDISTGQLVAEMGSKLGACD 165
            +++HCLR H+EP RL+FLPYH+LL S GRTGY+KYTD++TG+LVAE  +KLGAC+
Sbjct:  201 MEIHCLRTHLEPTRLDFLPYHYLLVSAGRTGYIKYTDVTTGELVAEHRTKLGACE 255
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20268.6661.1 vs. uniprot
Match: A0A7R9UD32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UD32_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.430e-19
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 VQVHCLREHVEPRRLEFLPYHFLLGSVGRTGYVKYTDISTGQLVAEMGSKLGACD 165
            +++HCLR+H++P  LEFLPYHFLL SVGR G++KY D+STGQLVAE  +KLG CD
Sbjct:  191 LEIHCLRKHIDPLALEFLPYHFLLASVGRAGFLKYQDVSTGQLVAEWRTKLGPCD 245
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20268.6661.1 vs. uniprot
Match: A0A8H5FRY5_9AGAR (BING4CT domain-containing protein n=1 Tax=Leucoagaricus leucothites TaxID=201217 RepID=A0A8H5FRY5_9AGAR)

HSP 1 Score: 85.5 bits (210), Expect = 5.640e-18
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 VQVHCLREHVEPRRLEFLPYHFLLGSVGRTGYVKYTDISTGQLVAEMGSKLGAC 162
            V++HCLR HVEP RLEFLPYH+LL SVG +GY+KY D STGQL+ E  +KLGAC
Sbjct:  218 VELHCLRSHVEPTRLEFLPYHWLLASVGNSGYLKYQDTSTGQLLVEHRTKLGAC 271
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20268.6661.1 vs. uniprot
Match: A0A8H6TT59_9AGAR (WD-REPEATS-REGION domain-containing protein n=1 Tax=Mycena kentingensis (nom. inval.) TaxID=1325293 RepID=A0A8H6TT59_9AGAR)

HSP 1 Score: 84.0 bits (206), Expect = 1.950e-17
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 VQVHCLREHVEPRRLEFLPYHFLLGSVGRTGYVKYTDISTGQLVAEMGSKLGACD 165
            V++HCL+ H+EP RLEFLPYH+LL SVG  GY+KY D STGQL+ E  +KLGAC+
Sbjct:  186 VELHCLKSHIEPTRLEFLPYHWLLASVGNAGYLKYQDTSTGQLLVEHRTKLGACN 240
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20268.6661.1 vs. uniprot
Match: A0A4S4MU84_9APHY (BING4CT domain-containing protein n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4MU84_9APHY)

HSP 1 Score: 84.0 bits (206), Expect = 1.950e-17
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 VQVHCLREHVEPRRLEFLPYHFLLGSVGRTGYVKYTDISTGQLVAEMGSKLGACD 165
            V++HCL+ H+EP RLEFLPYH+LL +VG  GY+KY D STGQLV E  +KLGAC+
Sbjct:  188 VELHCLKSHIEPTRLEFLPYHWLLAAVGNAGYLKYQDTSTGQLVVEHRTKLGACN 242
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20268.6661.1 vs. uniprot
Match: A0A507BUV6_9FUNG (BING4CT domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BUV6_9FUNG)

HSP 1 Score: 83.2 bits (204), Expect = 3.630e-17
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 VQVHCLREHVEPRRLEFLPYHFLLGSVGRTGYVKYTDISTGQLVAEMGSKLGACD 165
            ++VHCLR+H+E  RLEFLPYHFLL SVG  GY+KY D STG LVAE+ + LG CD
Sbjct:  205 LEVHCLRKHLEVNRLEFLPYHFLLASVGNAGYLKYQDTSTGNLVAELRTGLGRCD 259
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20268.6661.1 vs. uniprot
Match: A0A8H6WDF3_MYCCL (WD-REPEATS-REGION domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A8H6WDF3_MYCCL)

HSP 1 Score: 83.2 bits (204), Expect = 3.650e-17
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 VQVHCLREHVEPRRLEFLPYHFLLGSVGRTGYVKYTDISTGQLVAEMGSKLGACD 165
            V++HCL+ H+EP RLEFLPYH+LL S+G  GY+KY D STGQL+ E  +KLGAC+
Sbjct:  195 VELHCLKAHIEPTRLEFLPYHWLLASIGHAGYLKYQDTSTGQLLVEHRTKLGACN 249
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20268.6661.1 vs. uniprot
Match: A0A0D7B0X8_9AGAR (BING4CT-domain-containing protein n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7B0X8_9AGAR)

HSP 1 Score: 83.2 bits (204), Expect = 3.650e-17
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 VQVHCLREHVEPRRLEFLPYHFLLGSVGRTGYVKYTDISTGQLVAEMGSKLGAC 162
            V++HCL+ H+EP RLEFLPYH+LL SVG  GY+KY D STGQL+ E  +KLGAC
Sbjct:  206 VELHCLKAHIEPTRLEFLPYHWLLASVGNAGYLKYQDTSTGQLLTEHRTKLGAC 259
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20268.6661.1 vs. uniprot
Match: K5WWI5_AGABU (BING4CT domain-containing protein n=3 Tax=Agaricus bisporus TaxID=5341 RepID=K5WWI5_AGABU)

HSP 1 Score: 83.2 bits (204), Expect = 3.660e-17
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 VQVHCLREHVEPRRLEFLPYHFLLGSVGRTGYVKYTDISTGQLVAEMGSKLGAC 162
            V++HCL+ H+EP RLEFLPYH+LL SVG  GY+KY D STGQL+ E  +KLGAC
Sbjct:  213 VELHCLKAHIEPTRLEFLPYHWLLASVGNAGYLKYQDTSTGQLLVEHRTKLGAC 266
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20268.6661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHD0_9PHAE3.690e-2898.15BING4CT domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S1C2V6_9STRA5.610e-2067.27Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7R9UD32_9STRA5.430e-1967.27Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A8H5FRY5_9AGAR5.640e-1870.37BING4CT domain-containing protein n=1 Tax=Leucoaga... [more]
A0A8H6TT59_9AGAR1.950e-1765.45WD-REPEATS-REGION domain-containing protein n=1 Ta... [more]
A0A4S4MU84_9APHY1.950e-1765.45BING4CT domain-containing protein n=1 Tax=Antrodie... [more]
A0A507BUV6_9FUNG3.630e-1767.27BING4CT domain-containing protein n=1 Tax=Synchytr... [more]
A0A8H6WDF3_MYCCL3.650e-1763.64WD-REPEATS-REGION domain-containing protein n=1 Ta... [more]
A0A0D7B0X8_9AGAR3.650e-1766.67BING4CT-domain-containing protein n=1 Tax=Cylindro... [more]
K5WWI5_AGABU3.660e-1766.67BING4CT domain-containing protein n=3 Tax=Agaricus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20268contigEcto-sp13_S_contig20268:2628..2813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score114.8
Seed ortholog evalue1.5e-23
Seed eggNOG ortholog2880.D7FNZ6
Model size186
KEGG koko:K14768
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Exons1
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG1272@1,KOG1272@2759
Cds size186
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463017.9243143-CDS-Ecto-sp13_S_contig20268:2627..28131681463017.9243143-CDS-Ecto-sp13_S_contig20268:2627..2813Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20268 2628..2813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20268.6661.1prot_Ecto-sp13_S_contig20268.6661.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20268 2628..2813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20268.6661.1

>prot_Ecto-sp13_S_contig20268.6661.1 ID=prot_Ecto-sp13_S_contig20268.6661.1|Name=mRNA_Ecto-sp13_S_contig20268.6661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
VQVHCLREHVEPRRLEFLPYHFLLGSVGRTGYVKYTDISTGQLVAEMGSK
LGACDRSGWIA*
back to top

mRNA from alignment at Ecto-sp13_S_contig20268:2628..2813-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20268.6661.1 ID=mRNA_Ecto-sp13_S_contig20268.6661.1|Name=mRNA_Ecto-sp13_S_contig20268.6661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20268:2628..2813- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCAGGTGCATTGCCTCCGGGAGCACGTGGAGCCGCGAAGGTTGGAGTT
CTTGCCCTATCACTTCCTGCTTGGGAGTGTGGGCCGCACAGGTTACGTCA
AGTACACGGATATCAGCACGGGGCAGCTGGTGGCGGAGATGGGCAGCAAG
CTCGGGGCGTGCGACAGGTCAGGTTGGATAGCGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20268:2628..2813-

>mRNA_Ecto-sp13_S_contig20268.6661.1 ID=mRNA_Ecto-sp13_S_contig20268.6661.1|Name=mRNA_Ecto-sp13_S_contig20268.6661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20268:2628..2813- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCAGGTGCATTGCCTCCGGGAGCACGTGGAGCCGCGAAGGTTGGAGTT
CTTGCCCTATCACTTCCTGCTTGGGAGTGTGGGCCGCACAGGTTACGTCA
AGTACACGGATATCAGCACGGGGCAGCTGGTGGCGGAGATGGGCAGCAAG
CTCGGGGCGTGCGACAGGTCAGGTTGGATAGCGTAG
back to top