mRNA_Ecto-sp13_S_contig20262.6660.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20262.6660.1
Unique NamemRNA_Ecto-sp13_S_contig20262.6660.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20262.6660.1 vs. uniprot
Match: D8LPW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW7_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 5.730e-67
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 1 
Query:    1 QVTGTITGSDTRPDRTLSRSLTVMGMQGEGVVDHRVRVVKTHYPERPGFRAFNADKAILLVRNPFDAVDSYFNMALTNTHDRSLHDAVYEEFQEFWDGMIRNEMKV 318
            +VTGTITGSDTRPDRTLSRSL+VMGMQGEGVVDHRV+VVKTHYPERPGFRAF ADKAILLVRNPFDAVDSYFNMALTNTHDRSLHDAVYEEFQEFWDGMIRNEMKV
Sbjct:  116 EVTGTITGSDTRPDRTLSRSLSVMGMQGEGVVDHRVQVVKTHYPERPGFRAFEADKAILLVRNPFDAVDSYFNMALTNTHDRSLHDAVYEEFQEFWDGMIRNEMKV 221
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BLAST of mRNA_Ecto-sp13_S_contig20262.6660.1 vs. uniprot
Match: A0A6H5L6X4_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X4_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 1.620e-61
Identity = 97/106 (91.51%), Postives = 102/106 (96.23%), Query Frame = 1 
Query:    1 QVTGTITGSDTRPDRTLSRSLTVMGMQGEGVVDHRVRVVKTHYPERPGFRAFNADKAILLVRNPFDAVDSYFNMALTNTHDRSLHDAVYEEFQEFWDGMIRNEMKV 318
            ++TGTI   DTRPDRTLSRSL+VMGMQGEGVVDHRVRVVKTHYPERPGFRAF ADKA+LLVRNPFDA+DSYFNMALTNTHDRSLHDAVYEEFQEFWDGMIRNEMKV
Sbjct:   20 EITGTIXXXDTRPDRTLSRSLSVMGMQGEGVVDHRVRVVKTHYPERPGFRAFEADKAVLLVRNPFDAIDSYFNMALTNTHDRSLHDAVYEEFQEFWDGMIRNEMKV 125
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BLAST of mRNA_Ecto-sp13_S_contig20262.6660.1 vs. uniprot
Match: A0A835ZEH8_9STRA (Sulfotransfer_1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEH8_9STRA)

HSP 1 Score: 154 bits (388), Expect = 5.880e-44
Identity = 73/107 (68.22%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:    1 QVTGTITGSDTRPDRTLSRSLTVMGMQGEGVVDH-RVRVVKTHYPERPGFRAFNADKAILLVRNPFDAVDSYFNMALTNTHDRSLHDAVYEEFQEFWDGMIRNEMKV 318
            + TG ITGSDTRPDRTLSRSL   G+QGEGV D  RV +VKTH+PER G++ F A +AILLVRNPFDA+DSYFNMALTNTHD+SLH+ VY  F + WDG++ NEM +
Sbjct:   71 KATGVITGSDTRPDRTLSRSLAAFGLQGEGVTDFKRVLLVKTHWPERQGWKRFTAQRAILLVRNPFDAIDSYFNMALTNTHDKSLHEQVYRMFGDIWDGLVHNEMDI 177
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BLAST of mRNA_Ecto-sp13_S_contig20262.6660.1 vs. uniprot
Match: A0A8K1CNX2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNX2_PYTOL)

HSP 1 Score: 146 bits (368), Expect = 6.200e-40
Identity = 67/106 (63.21%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 QVTGTITGSDTRPDRTLSRSLTVMGMQGEGVVDHRVRVVKTHYPERPGFRAFNADKAILLVRNPFDAVDSYFNMALTNTHDRSLHDAVYEEFQEFWDGMIRNEMKV 318
            +VTG  TG DTRPDRTLS+ L   GM+GEG+VD  V  VKTH+PER G+++FN  KAIL+VRNP+DA+DSYFNM LTN+H++SLH++ YE F + WDGM+RNE++V
Sbjct:  130 KVTGVYTGCDTRPDRTLSQQLQEFGMKGEGIVDDSVWFVKTHFPERVGWKSFNIQKAILVVRNPWDAIDSYFNMTLTNSHNKSLHESQYERFADRWDGMLRNEIEV 235
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BLAST of mRNA_Ecto-sp13_S_contig20262.6660.1 vs. uniprot
Match: A0A225WWE7_9STRA (Sulfotransfer_1 domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WWE7_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.200e-39
Identity = 68/106 (64.15%), Postives = 85/106 (80.19%), Query Frame = 1 
Query:    1 QVTGTITGSDTRPDRTLSRSLTVMGMQGEGVVDHRVRVVKTHYPERPGFRAFNADKAILLVRNPFDAVDSYFNMALTNTHDRSLHDAVYEEFQEFWDGMIRNEMKV 318
            +VTG  TG DTRPDR+LS+ L   GM+GEGVVD  V  VKTH+PER G++AF   KAIL+VRNP+DA+DSYFNM LTNTH++SLH++ YE F E WDG++RNE+ V
Sbjct:   96 KVTGVYTGCDTRPDRSLSKELQQYGMKGEGVVDESVWFVKTHFPERVGYKAFPVKKAILVVRNPWDAIDSYFNMTLTNTHNKSLHESQYERFAERWDGLLRNEIDV 201
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BLAST of mRNA_Ecto-sp13_S_contig20262.6660.1 vs. uniprot
Match: H3H0T5_PHYRM (Sulfotransfer_1 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H0T5_PHYRM)

HSP 1 Score: 144 bits (363), Expect = 2.320e-39
Identity = 67/106 (63.21%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:    1 QVTGTITGSDTRPDRTLSRSLTVMGMQGEGVVDHRVRVVKTHYPERPGFRAFNADKAILLVRNPFDAVDSYFNMALTNTHDRSLHDAVYEEFQEFWDGMIRNEMKV 318
            +VTG  TG DTRPDR+LS+ L + GM+GEGVVD  V  VKTH+PER G++ F A KAIL+VRNP+DA+DSYFNM LTNTH++SLH++ YE F + WDG++RNE+ V
Sbjct:   93 KVTGVYTGCDTRPDRSLSKELQLYGMKGEGVVDESVWFVKTHFPERVGYKDFPAKKAILVVRNPWDAIDSYFNMTLTNTHNKSLHESQYERFADRWDGLLRNEIDV 198
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BLAST of mRNA_Ecto-sp13_S_contig20262.6660.1 vs. uniprot
Match: K3X032_GLOUD (Sulfotransfer_1 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X032_GLOUD)

HSP 1 Score: 144 bits (362), Expect = 2.820e-39
Identity = 67/106 (63.21%), Postives = 84/106 (79.25%), Query Frame = 1 
Query:    1 QVTGTITGSDTRPDRTLSRSLTVMGMQGEGVVDHRVRVVKTHYPERPGFRAFNADKAILLVRNPFDAVDSYFNMALTNTHDRSLHDAVYEEFQEFWDGMIRNEMKV 318
            ++TG  TG DTRPDR LS+ L   GM+GEGVVD  V  VKTH+PER G++ FN  KAIL+VRNP+DA+DSYFNM LTNTH++SLH++ YE F + WDG+IRNE+ V
Sbjct:  102 KITGVYTGCDTRPDRALSQELQQYGMKGEGVVDESVWFVKTHFPERVGWKPFNVKKAILVVRNPWDAIDSYFNMTLTNTHNKSLHESQYERFADRWDGLIRNEIDV 207
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BLAST of mRNA_Ecto-sp13_S_contig20262.6660.1 vs. uniprot
Match: A0A3M6VK79_9STRA (Sulfotransfer_1 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VK79_9STRA)

HSP 1 Score: 142 bits (358), Expect = 3.390e-39
Identity = 66/106 (62.26%), Postives = 85/106 (80.19%), Query Frame = 1 
Query:    1 QVTGTITGSDTRPDRTLSRSLTVMGMQGEGVVDHRVRVVKTHYPERPGFRAFNADKAILLVRNPFDAVDSYFNMALTNTHDRSLHDAVYEEFQEFWDGMIRNEMKV 318
            +VTG  TG DTRPDR+LS+ L   GM+GEGVVD  V  VKTH+PER G++ F A KAIL+VRNP+DA+DSYFNM LTNTH++SLH++ Y+ F + WDG++RNE+ V
Sbjct:   39 KVTGVYTGCDTRPDRSLSKELQKYGMKGEGVVDESVWFVKTHFPERVGYKEFPASKAILVVRNPWDAIDSYFNMTLTNTHNKSLHESQYKRFADRWDGLLRNEIDV 144
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BLAST of mRNA_Ecto-sp13_S_contig20262.6660.1 vs. uniprot
Match: A0A2P4WWA6_9STRA (Sulfotransfer_1 domain-containing protein (Fragment) n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWA6_9STRA)

HSP 1 Score: 143 bits (360), Expect = 6.190e-39
Identity = 67/106 (63.21%), Postives = 84/106 (79.25%), Query Frame = 1 
Query:    1 QVTGTITGSDTRPDRTLSRSLTVMGMQGEGVVDHRVRVVKTHYPERPGFRAFNADKAILLVRNPFDAVDSYFNMALTNTHDRSLHDAVYEEFQEFWDGMIRNEMKV 318
            +VTG  TG DTRPDR+LS+ L   GM+GEGVVD  V  VKTH+PER G++ F   KAIL+VRNP+DA+DSYFNM LTNTH++SLH++ YE F E WDG++RNE+ V
Sbjct:   97 KVTGVYTGCDTRPDRSLSKELQQYGMKGEGVVDESVWFVKTHFPERVGYKEFPVKKAILVVRNPWDAIDSYFNMTLTNTHNKSLHESQYERFAERWDGLLRNEIDV 202
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BLAST of mRNA_Ecto-sp13_S_contig20262.6660.1 vs. uniprot
Match: A0A421GFX3_9STRA (Sulfotransfer_1 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GFX3_9STRA)

HSP 1 Score: 142 bits (358), Expect = 9.440e-39
Identity = 67/106 (63.21%), Postives = 85/106 (80.19%), Query Frame = 1 
Query:    1 QVTGTITGSDTRPDRTLSRSLTVMGMQGEGVVDHRVRVVKTHYPERPGFRAFNADKAILLVRNPFDAVDSYFNMALTNTHDRSLHDAVYEEFQEFWDGMIRNEMKV 318
            +VTG  TG DTRPDR+LS+ L   GM+GEGVVD  V  VKTH+PER G++AF A KAIL+VRNP+DA+DSYFNM LTNTH++SL ++ YE F + WDG++RNE+ V
Sbjct:   77 KVTGVYTGCDTRPDRSLSKELQQYGMKGEGVVDESVWFVKTHFPERVGYKAFPAKKAILVVRNPWDAIDSYFNMTLTNTHNKSLQESQYERFADRWDGLLRNEIDV 182
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20262.6660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPW7_ECTSI5.730e-6796.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6X4_9PHAE1.620e-6191.51Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A835ZEH8_9STRA5.880e-4468.22Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A8K1CNX2_PYTOL6.200e-4063.21Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A225WWE7_9STRA1.200e-3964.15Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
H3H0T5_PHYRM2.320e-3963.21Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
K3X032_GLOUD2.820e-3963.21Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A3M6VK79_9STRA3.390e-3962.26Sulfotransfer_1 domain-containing protein n=2 Tax=... [more]
A0A2P4WWA6_9STRA6.190e-3963.21Sulfotransfer_1 domain-containing protein (Fragmen... [more]
A0A421GFX3_9STRA9.440e-3963.21Sulfotransfer_1 domain-containing protein n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20262contigEcto-sp13_S_contig20262:853..2688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score145.6
Seed ortholog evalue1.3e-32
Seed eggNOG ortholog164328.Phyra83791
Model size318
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Sulfotransferase family
EggNOG OGs3Q9PF@4776,KOG4157@1,KOG4157@2759
Cds size318
COG Functional cat.GO
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463017.8727386-CDS-Ecto-sp13_S_contig20262:852..9331681463017.8727386-CDS-Ecto-sp13_S_contig20262:852..933Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20262 853..933 +
1681463017.883142-CDS-Ecto-sp13_S_contig20262:1772..19391681463017.883142-CDS-Ecto-sp13_S_contig20262:1772..1939Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20262 1773..1939 +
1681463017.8921375-CDS-Ecto-sp13_S_contig20262:2618..26881681463017.8921375-CDS-Ecto-sp13_S_contig20262:2618..2688Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20262 2619..2688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20262.6660.1prot_Ecto-sp13_S_contig20262.6660.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20262 853..2688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20262.6660.1

>prot_Ecto-sp13_S_contig20262.6660.1 ID=prot_Ecto-sp13_S_contig20262.6660.1|Name=mRNA_Ecto-sp13_S_contig20262.6660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
QVTGTITGSDTRPDRTLSRSLTVMGMQGEGVVDHRVRVVKTHYPERPGFR
AFNADKAILLVRNPFDAVDSYFNMALTNTHDRSLHDAVYEEFQEFWDGMI
RNEMKV
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mRNA from alignment at Ecto-sp13_S_contig20262:853..2688+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20262.6660.1 ID=mRNA_Ecto-sp13_S_contig20262.6660.1|Name=mRNA_Ecto-sp13_S_contig20262.6660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1836bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20262:853..2688+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCACAGGAACCATCACGGGCAGTGACACCCGTCCAGACCGAACTCT
AAGCAGGAGCCTTACCGTTATGGGCATGCAGGTGCGTCATGCACGTGTGG
GCGTTATGAATCCTGATCATCGACCGTCCTGTTGCTCCAGTAAACGTATC
GTCATCAGCATGCGTACCTCTTTTTGTATACCTTGATTTTGTGTTGACGG
CTGAGCTCTCTGCAGGCCTGGAAACCGATTCAATTTCGGCAATTGTCTTG
ACGAATTACTTTTTTTTTCTAACGGCTGTGCATGTTTGATGCATGTCACC
TGTGTTGTAGACGACCCTTTTAGTAGAGTACACATTAGCGGTGGCGAAAG
GCCGGCGCCCATGGGAGAGGGCAGGTGGTGGGGTAGCTTGATCTAATGTA
GCACCGGGTGGTTGATCAAGCGAAGCTGCTGCTGCTGCAACGTGGTGCTG
TGTTGGGAACGAAGGCCCGCAAATCACCAGCACAAGCGTATTGCTGCACT
AGGACGCCCCAGTTTGGTGTTGCTTCCTCCGATAGACTTAGGAGGGTATG
TCCAAGGCGCCCAGCAGGGGGTCTCGTGCTACTCTGCTCTATGCACATGA
TCTTTTCGAACAACAACATACAGCCACCCGCCGCAGTATAAGTATGACAT
GTGCGTCTCCTTTTTTTCGCGCAGAGCAGGGAAACCATCTTTTTTCGATA
GCTGAAGAGAGTTTTTTTTCTGACGGAAGACAACGTTCACCTCGGCAAAC
ACACCTGCTACGCAGAGAAAAAAGTATCACAAGGGGCTAGATGATTTGTC
TCTTCTTGTGACGAAAGACAACGGTCACATTCGACCACATGCATACCCGG
ACACATGGAGAAATGTCACAATAGACTTTATTTTATTTTTGGGGGTCACA
CCCACATGACCGAGACACAGGGAGAAGGGGTGGTCGACCACCGCGTGCGA
GTGGTCAAGACCCACTATCCGGAGAGGCCCGGTTTTAGAGCCTTCAACGC
CGACAAGGCCATCCTTCTCGTCCGGAACCCGTTCGACGCCGTCGACTCGT
ACTTCAACATGGCCCTCACCAACACGCACGACCGGAGGTGAAATGGATGG
GTGCCGATCCTCTTTCTCGATTCCTCTCTTAGTGCCATGTGTGCTGCGAC
GTGTTGCTGGTCAAGACCGCCGTGCTTGCAATAACATACTTTGGTGGGTG
TTTGGTAGCTTGCCTTTTCGCACCGCGCGGGGAAGCTGTGGAAATCGGTG
GTATTCTCCTCTGCCCGGTGACTGCTGGGTAGTCACTACCCGGCACGACG
ACGAAGAGTTGCACTCCTTGTCTTTCCCCTCGTTTTTGTCACTGTCGACA
CCAGCGATTCACACACCGTGTGATGCACGACCATCTTTTAGACAGGCGTG
TCGTTTTGGTGGCGGTGTTTTTTCCGAGCTGCGGCTGCAGTTCCTCTCTC
TAATCGATCCCGTCGATTCACTCTTTGGTGTGGCTCCCTCCAATGCGGAC
GACCAGAAGCATTGTCCACTTGTTTCTAGTTTTACTTTCATGCTATTTTG
TCATTTACAGTTTACCATCAGGCTCTCGTGACCGTTTGTCATTTTTCTTC
TCGCCTCATGGCACTGGGCCGTCTCTTTCTCTGACCCTTCCCTACCCCCC
CCCGCTTCTCCCTCTCGGCCTCATGCCCTTCTTCTGTACGTTCGTCGTGT
TGGGGCCTCTCGCGCTCTCTTTCGTTTGTTCAATTTGTTTGGCTTATGTG
TTTCGCTGCAAAAAAGTCTGCACGACGCGGTGTACGAGGAGTTCCAAGAG
TTTTGGGACGGCATGATTCGGAACGAAATGAAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20262:853..2688+

>mRNA_Ecto-sp13_S_contig20262.6660.1 ID=mRNA_Ecto-sp13_S_contig20262.6660.1|Name=mRNA_Ecto-sp13_S_contig20262.6660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20262:853..2688+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCACAGGAACCATCACGGGCAGTGACACCCGTCCAGACCGAACTCT
AAGCAGGAGCCTTACCGTTATGGGCATGCAGGGAGAAGGGGTGGTCGACC
ACCGCGTGCGAGTGGTCAAGACCCACTATCCGGAGAGGCCCGGTTTTAGA
GCCTTCAACGCCGACAAGGCCATCCTTCTCGTCCGGAACCCGTTCGACGC
CGTCGACTCGTACTTCAACATGGCCCTCACCAACACGCACGACCGGAGTC
TGCACGACGCGGTGTACGAGGAGTTCCAAGAGTTTTGGGACGGCATGATT
CGGAACGAAATGAAGGTA
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