mRNA_Ecto-sp13_S_contig2026.6658.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2026.6658.1
Unique NamemRNA_Ecto-sp13_S_contig2026.6658.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Match: D8LKP7_ECTSI (Wu:fa96e12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP7_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 5.200e-73
Identity = 126/139 (90.65%), Postives = 128/139 (92.09%), Query Frame = -2
Query:    3 LLLEWVPILCPEIVRRSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETPRTPR----DRYLEWMTVRLGGFRDELLAACTETLLSAPVGLLGADLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETPNLLW 407
            LLLEWVPILCPE+V+RSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETP          YLEWMTVRLGGFRDELLAACTETLLSAPVGLLG DLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETPNLLW
Sbjct:  761 LLLEWVPILCPELVKRSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETPCDQAVLCPPSYLEWMTVRLGGFRDELLAACTETLLSAPVGLLGGDLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETPNLLW 899          
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Match: A0A6H5L056_9PHAE (NUC194 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L056_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 1.800e-58
Identity = 123/215 (57.21%), Postives = 128/215 (59.53%), Query Frame = -2
Query:    3 LLLEWVPILCPEIVRRSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETP-------------------------------------------------------------RTPRDR-------------------YLEWMTVRLGGFRDELLAACTETLLSAPVGLLGADLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETPNLLW 407
            LLLEWVPILC E+V+RSLERPLVSGFYRLVTLVFRETARSGYFDD+T  PETP                                                                R+R                   YLEWMTVRLGGFRDELLAACTETLLSAPVGLLG DL+PLVPALRAALTSGTSHLPTAVVAVEALERWREETPNLLW
Sbjct:  346 LLLEWVPILCSELVKRSLERPLVSGFYRLVTLVFRETARSGYFDDNT--PETPCDQAVLSPPSPGSVVTAIGLDMGGGSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAARERVGDAGERINCRRILCRRVSYLEWMTVRLGGFRDELLAACTETLLSAPVGLLGGDLTPLVPALRAALTSGTSHLPTAVVAVEALERWREETPNLLW 558          
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Match: A0A5A9PMG2_9TELE (DNA-dependent protein kinase catalytic subunit n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9PMG2_9TELE)

HSP 1 Score: 85.9 bits (211), Expect = 7.620e-17
Identity = 48/138 (34.78%), Postives = 76/138 (55.07%), Query Frame = -2
Query:   15 EWVPILCPEIVRRSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETPRTPRD----------RYLEWMTVRLGGFRDELLAACTETLLSAPVGLLGADLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETP 398
            +W+  LC E++ +S+  PLVSGFY+L++L  R + +  YF D    P+   +             ++ + + VR+  ++DELLAAC   +LS    ++  D+   +PAL+AAL  G SH P A  A++ALE W    P
Sbjct:  642 QWMYPLCHELILQSIRFPLVSGFYKLLSLSIRISKKIHYFQDPKEGPKATASGYSTKNASFSLLTKFGKEVCVRMKQYKDELLAACLMFVLSLHPDMVALDIKAYIPALQAALRLGLSHAPLATAALDALESWSSHIP 779          
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Match: A0A8M3B1E3_DANRE (DNA-dependent protein kinase catalytic subunit n=2 Tax=Danio rerio TaxID=7955 RepID=A0A8M3B1E3_DANRE)

HSP 1 Score: 83.6 bits (205), Expect = 4.900e-16
Identity = 49/137 (35.77%), Postives = 77/137 (56.20%), Query Frame = -2
Query:   15 EWVPILCPEIVRRSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETP--RTPRD-------RYLEWMTVRLGGFRDELLAACTETLLSAPVGLLGADLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETP 398
            +W+  LC E++ +S+  PLVSGFY+L++L      ++ YF D    P+     T  +       ++ + + VR+  ++DELLAAC   +LS   G++  D+   +PAL+AAL  G SH P A  A++ALE W    P
Sbjct:  659 QWMHPLCHELILQSIRFPLVSGFYKLLSLSMGIAKKTQYFQDVKQCPKQVGGSTMENACFSLLAKFGKEVCVRMKQYKDELLAACLMFILSLHPGMVALDIKAYIPALQAALRLGLSHAPLATAALDALESWSSFIP 795          
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Match: A0A6P8GM99_CLUHA (DNA-dependent protein kinase catalytic subunit n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8GM99_CLUHA)

HSP 1 Score: 83.6 bits (205), Expect = 4.900e-16
Identity = 51/142 (35.92%), Postives = 77/142 (54.23%), Query Frame = -2
Query:   12 EWVPILCPEIVRRSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETPRTPRDR-------------YLEWMTVRLGGFRDELLAACTETLLSAPVGLLGADLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETPN 398
            +WV  L  E++  S+  PLVSGFYRL++L      +  YF    VSP + ++  D+             + + ++VR+  ++DELLAAC   +LS    ++  D+   +PAL+AAL  G SH P A  A++ALE W  E P 
Sbjct:  655 QWVYPLSHELILHSIRFPLVSGFYRLLSLTMTIAKKIRYFQG--VSPRSYKSIEDKDPVKCACFALVSKFGKEVSVRIKQYKDELLAACLTFVLSLHHDVVALDIKAYIPALQAALRLGLSHAPLATAALDALELWSSEIPR 794          
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Match: A0A6J2VU90_CHACN (DNA-dependent protein kinase catalytic subunit n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2VU90_CHACN)

HSP 1 Score: 82.8 bits (203), Expect = 9.110e-16
Identity = 50/140 (35.71%), Postives = 76/140 (54.29%), Query Frame = -2
Query:   15 EWVPILCPEIVRRSLERPLVSGFYRLVTLVFRETARSGYFDD----------HTVSPETPRTPR--DRYLEWMTVRLGGFRDELLAACTETLLSAPVGLLGADLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETP 398
            +WV  LC E++ +S+  PLVSGFY+L++L      +  YF D           TV P+         ++ + ++VR+  ++DELLAAC   +LS    ++  D+   +PAL+AAL  G SH P A  A++ALE W    P
Sbjct:  656 QWVYPLCHELILQSIRFPLVSGFYKLLSLSMSIGQKIRYFQDVGPKSFKSKDATVDPQKSACFALVSKFGKEVSVRIKQYKDELLAACLTFILSLHPDIVALDIKAYIPALQAALKLGLSHAPLASAALDALESWSSHIP 795          
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Match: A0A6L2PQG6_COPFO (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2PQG6_COPFO)

HSP 1 Score: 82.0 bits (201), Expect = 1.680e-15
Identity = 44/134 (32.84%), Postives = 72/134 (53.73%), Query Frame = -2
Query:   12 WVPILCPEIVRRSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETPRTPRDRY------LEWMTVRLGGFRDELLAACTETLLSAPVGLLGADLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETPN 395
            W+   C +++  S ++PLVSGFY+L+T+  +   + GYF D+      P   R  Y      L+ + +RL  ++++L  AC ET+++APV L+   L    PA  A    G S LP A + + AL++W    P+
Sbjct:  555 WIQQFCYQVISESSQKPLVSGFYKLLTVALQLCDQLGYFSDYEDVHSLPAEKRRCYVLLCAFLQELLIRLQQYKNDLQVACLETIIAAPVALVVPLLPHAAPAFEAIFRMGRSMLPLARLGLSALDKWYSTLPS 688          
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Match: A0A4W4HU63_ELEEL (DNA-dependent protein kinase catalytic subunit n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4HU63_ELEEL)

HSP 1 Score: 82.0 bits (201), Expect = 1.690e-15
Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = -2
Query:   15 EWVPILCPEIVRRSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETPRTPR--------DRYLEWMTVRLGGFRDELLAACTETLLSAPVGLLGADLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETP 398
            +W+  LC E++ RS+  PLVSGFY+L++L      +  YF   +       +P          ++ + + VR+  ++DELLAAC   +LS    ++  D+   VPAL+AAL  G SH P A  A++ALE W    P
Sbjct:  541 QWMYPLCHELILRSIRFPLVSGFYKLLSLSMAIAKKISYFQVKSGKHADEDSPAGNACFALISKFGKEVCVRIKQYKDELLAACLMFVLSLHPDMVALDVKAYVPALQAALRLGLSHAPLATAALDALESWSARIP 676          
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Match: A0A4W4HQI2_ELEEL (DNA-dependent protein kinase catalytic subunit n=2 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4HQI2_ELEEL)

HSP 1 Score: 82.0 bits (201), Expect = 1.690e-15
Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = -2
Query:   15 EWVPILCPEIVRRSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETPRTPR--------DRYLEWMTVRLGGFRDELLAACTETLLSAPVGLLGADLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETP 398
            +W+  LC E++ RS+  PLVSGFY+L++L      +  YF   +       +P          ++ + + VR+  ++DELLAAC   +LS    ++  D+   VPAL+AAL  G SH P A  A++ALE W    P
Sbjct:  542 QWMYPLCHELILRSIRFPLVSGFYKLLSLSMAIAKKISYFQVKSGKHADEDSPAGNACFALISKFGKEVCVRIKQYKDELLAACLMFVLSLHPDMVALDVKAYVPALQAALRLGLSHAPLATAALDALESWSARIP 677          
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Match: A0A4W4HUH9_ELEEL (DNA-dependent protein kinase catalytic subunit n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4HUH9_ELEEL)

HSP 1 Score: 82.0 bits (201), Expect = 1.690e-15
Identity = 49/137 (35.77%), Postives = 74/137 (54.01%), Query Frame = -2
Query:   15 EWVPILCPEIVRRSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETPR-TPR--------DRYLEWMTVRLGGFRDELLAACTETLLSAPVGLLGADLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETP 398
            +W+  LC E++ RS+  PLVSGFY+L++L      +  YF   +V       +P          ++ + + VR+  ++DELLAAC   +LS    ++  D+   VPAL+AAL  G SH P A  A++ALE W    P
Sbjct:  552 QWMYPLCHELILRSIRFPLVSGFYKLLSLSMAIAKKISYFQVKSVGKHADEDSPAGNACFALISKFGKEVCVRIKQYKDELLAACLMFVLSLHPDMVALDVKAYVPALQAALRLGLSHAPLATAALDALESWSARIP 688          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKP7_ECTSI5.200e-7390.65Wu:fa96e12 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5L056_9PHAE1.800e-5857.21NUC194 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A5A9PMG2_9TELE7.620e-1734.78DNA-dependent protein kinase catalytic subunit n=1... [more]
A0A8M3B1E3_DANRE4.900e-1635.77DNA-dependent protein kinase catalytic subunit n=2... [more]
A0A6P8GM99_CLUHA4.900e-1635.92DNA-dependent protein kinase catalytic subunit n=1... [more]
A0A6J2VU90_CHACN9.110e-1635.71DNA-dependent protein kinase catalytic subunit n=1... [more]
A0A6L2PQG6_COPFO1.680e-1532.84Reverse transcriptase domain-containing protein (F... [more]
A0A4W4HU63_ELEEL1.690e-1535.29DNA-dependent protein kinase catalytic subunit n=1... [more]
A0A4W4HQI2_ELEEL1.690e-1535.29DNA-dependent protein kinase catalytic subunit n=2... [more]
A0A4W4HUH9_ELEEL1.690e-1535.77DNA-dependent protein kinase catalytic subunit n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2026contigEcto-sp13_S_contig2026:11072..12319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size408
Hectar predicted targeting categoryother localisation
Exons2
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463017.7767508-UTR-Ecto-sp13_S_contig2026:11071..111491681463017.7767508-UTR-Ecto-sp13_S_contig2026:11071..11149Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2026 11072..11149 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463017.7855923-CDS-Ecto-sp13_S_contig2026:11149..112291681463017.7855923-CDS-Ecto-sp13_S_contig2026:11149..11229Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2026 11150..11229 -
1681463017.7941558-CDS-Ecto-sp13_S_contig2026:12069..123191681463017.7941558-CDS-Ecto-sp13_S_contig2026:12069..12319Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2026 12070..12319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2026.6658.1prot_Ecto-sp13_S_contig2026.6658.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2026 11150..12319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2026.6658.1

>prot_Ecto-sp13_S_contig2026.6658.1 ID=prot_Ecto-sp13_S_contig2026.6658.1|Name=mRNA_Ecto-sp13_S_contig2026.6658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
GHSRLGVSSLHLSSASTATTAVGRCDVPDVSAALRAGTRGLRSAPSNPTG
ALRRVSVQAARSSSRKPPRRTVIHSRYLSRGVRGVSGDTVWSSKYPERAV
SRNTRVTSR*
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mRNA from alignment at Ecto-sp13_S_contig2026:11072..12319-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2026.6658.1 ID=mRNA_Ecto-sp13_S_contig2026.6658.1|Name=mRNA_Ecto-sp13_S_contig2026.6658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1248bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2026:11072..12319- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCACAGCAGATTAGGGGTCTCCTCCCTCCACCTCTCCAGCGCCTCCAC CGCCACGACCGCGGTCGGCAGGTGCGACGTTCCGGACGTTAGCGCCGCCC TGAGGGCGGGGACGAGGGGGCTTAGATCCGCCCCCAGCAATCCCACCGGA GCGCTCAGGAGGGTCTCCGTGCAGGCGGCCAGGAGCTCGTCGCGGAAGCC GCCCAGGCGCACCGTCATCCACTCGAGGTACCTGTCGCGGGGGGTACGTG GTTGGTGGGGATGGAGGAGGGCGGCTGTCATCGACTCGAGGTACTACGCC GGGGGCTGGGGTGTAACAGGGGTGGAAACAGGCCAACACAACCCAAGCAA AGAACCGAAGTATCCGACGGACGACACTCGCCTGCACAAAATCCTGCGGC AATTGATTCTCTCGCTGCCGTCTCCGACCCTCTCTTCGACCGCGGCCTGG TCACCGCCACCTCCTCCAGTCACAGAAACCTGATCACCCAGGCCTCCGCC GCCGCCGCCGCCGCCGCCGCCGCCGCCGATGCTGCTACTGCTGCTACTGC TGCTGGCCCCTCCGCCCAGGCTTCCTCCGCCCACATCGAGACCGATGGCC GTGACCACGGATCCCGGCGAGGGGGGGCACAGCACGGCCTACGCACACGA GGGCGAACGCGTGAAGAGTGAGACGCGAAGCCGTTGCCACCCTCTTGACA AGAAGGGCCGTTTACTGTACGGACCGTATTTGGGTTAAAAAAATCTCAAC AAAGTTCTGAAACCTTCCTGCGTTTCCGAACACCCATCGAATTCTTCTTG TAAATTTGTAACTGTCCATTTGTTCCATGGCACAATCGATAATCCAACTG TTCTAATTTGAACACAACGAGCTAGACGTGTCCCGTTTAAGACGGCCCCT GAAACGGGGGGTATGTTGCACGCAAGGGGCACTGGCTGTACTTGGGAGTG GACGGTGCAGAGTTTAGCAGGGGATTGGAACGAGTACCAGATTTTAGTTC TTTTTATGACGGCGCCGTCATTCCGCTGCATCCCATAACAACAAAGACGA CATGCCTTCCTGTCTACCGGCGTTCTTACCTGATCACAAGGCGTCTCTGG TGACACTGTGTGGTCATCGAAATACCCCGAGCGAGCGGTCTCGCGGAATA CCAGGGTGACCAGCCGGTAAAACCCGCTTACCAACGGCCGTTCCAAGGAC CGTCTCACGATCTCCGGGCAGAGGATAGGAACCCATTCTAGCAGAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2026:11072..12319-

>mRNA_Ecto-sp13_S_contig2026.6658.1 ID=mRNA_Ecto-sp13_S_contig2026.6658.1|Name=mRNA_Ecto-sp13_S_contig2026.6658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2026:11072..12319- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCACAGCAGATTAGGGGTCTCCTCCCTCCACCTCTCCAGCGCCTCCAC
CGCCACGACCGCGGTCGGCAGGTGCGACGTTCCGGACGTTAGCGCCGCCC
TGAGGGCGGGGACGAGGGGGCTTAGATCCGCCCCCAGCAATCCCACCGGA
GCGCTCAGGAGGGTCTCCGTGCAGGCGGCCAGGAGCTCGTCGCGGAAGCC
GCCCAGGCGCACCGTCATCCACTCGAGGTACCTGTCGCGGGGGGTACGTG
GCGTCTCTGGTGACACTGTGTGGTCATCGAAATACCCCGAGCGAGCGGTC
TCGCGGAATACCAGGGTGACCAGCCGGTAA
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