mRNA_Ecto-sp13_S_contig2026.6658.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Match: D8LKP7_ECTSI (Wu:fa96e12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP7_ECTSI) HSP 1 Score: 246 bits (628), Expect = 5.200e-73 Identity = 126/139 (90.65%), Postives = 128/139 (92.09%), Query Frame = -2
Query: 3 LLLEWVPILCPEIVRRSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETPRTPR----DRYLEWMTVRLGGFRDELLAACTETLLSAPVGLLGADLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETPNLLW 407
LLLEWVPILCPE+V+RSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETP YLEWMTVRLGGFRDELLAACTETLLSAPVGLLG DLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETPNLLW
Sbjct: 761 LLLEWVPILCPELVKRSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETPCDQAVLCPPSYLEWMTVRLGGFRDELLAACTETLLSAPVGLLGGDLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETPNLLW 899
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Match: A0A6H5L056_9PHAE (NUC194 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L056_9PHAE) HSP 1 Score: 204 bits (520), Expect = 1.800e-58 Identity = 123/215 (57.21%), Postives = 128/215 (59.53%), Query Frame = -2
Query: 3 LLLEWVPILCPEIVRRSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETP-------------------------------------------------------------RTPRDR-------------------YLEWMTVRLGGFRDELLAACTETLLSAPVGLLGADLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETPNLLW 407
LLLEWVPILC E+V+RSLERPLVSGFYRLVTLVFRETARSGYFDD+T PETP R+R YLEWMTVRLGGFRDELLAACTETLLSAPVGLLG DL+PLVPALRAALTSGTSHLPTAVVAVEALERWREETPNLLW
Sbjct: 346 LLLEWVPILCSELVKRSLERPLVSGFYRLVTLVFRETARSGYFDDNT--PETPCDQAVLSPPSPGSVVTAIGLDMGGGSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAARERVGDAGERINCRRILCRRVSYLEWMTVRLGGFRDELLAACTETLLSAPVGLLGGDLTPLVPALRAALTSGTSHLPTAVVAVEALERWREETPNLLW 558
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Match: A0A5A9PMG2_9TELE (DNA-dependent protein kinase catalytic subunit n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9PMG2_9TELE) HSP 1 Score: 85.9 bits (211), Expect = 7.620e-17 Identity = 48/138 (34.78%), Postives = 76/138 (55.07%), Query Frame = -2
Query: 15 EWVPILCPEIVRRSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETPRTPRD----------RYLEWMTVRLGGFRDELLAACTETLLSAPVGLLGADLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETP 398
+W+ LC E++ +S+ PLVSGFY+L++L R + + YF D P+ + ++ + + VR+ ++DELLAAC +LS ++ D+ +PAL+AAL G SH P A A++ALE W P
Sbjct: 642 QWMYPLCHELILQSIRFPLVSGFYKLLSLSIRISKKIHYFQDPKEGPKATASGYSTKNASFSLLTKFGKEVCVRMKQYKDELLAACLMFVLSLHPDMVALDIKAYIPALQAALRLGLSHAPLATAALDALESWSSHIP 779
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Match: A0A8M3B1E3_DANRE (DNA-dependent protein kinase catalytic subunit n=2 Tax=Danio rerio TaxID=7955 RepID=A0A8M3B1E3_DANRE) HSP 1 Score: 83.6 bits (205), Expect = 4.900e-16 Identity = 49/137 (35.77%), Postives = 77/137 (56.20%), Query Frame = -2
Query: 15 EWVPILCPEIVRRSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETP--RTPRD-------RYLEWMTVRLGGFRDELLAACTETLLSAPVGLLGADLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETP 398
+W+ LC E++ +S+ PLVSGFY+L++L ++ YF D P+ T + ++ + + VR+ ++DELLAAC +LS G++ D+ +PAL+AAL G SH P A A++ALE W P
Sbjct: 659 QWMHPLCHELILQSIRFPLVSGFYKLLSLSMGIAKKTQYFQDVKQCPKQVGGSTMENACFSLLAKFGKEVCVRMKQYKDELLAACLMFILSLHPGMVALDIKAYIPALQAALRLGLSHAPLATAALDALESWSSFIP 795
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Match: A0A6P8GM99_CLUHA (DNA-dependent protein kinase catalytic subunit n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8GM99_CLUHA) HSP 1 Score: 83.6 bits (205), Expect = 4.900e-16 Identity = 51/142 (35.92%), Postives = 77/142 (54.23%), Query Frame = -2
Query: 12 EWVPILCPEIVRRSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETPRTPRDR-------------YLEWMTVRLGGFRDELLAACTETLLSAPVGLLGADLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETPN 398
+WV L E++ S+ PLVSGFYRL++L + YF VSP + ++ D+ + + ++VR+ ++DELLAAC +LS ++ D+ +PAL+AAL G SH P A A++ALE W E P
Sbjct: 655 QWVYPLSHELILHSIRFPLVSGFYRLLSLTMTIAKKIRYFQG--VSPRSYKSIEDKDPVKCACFALVSKFGKEVSVRIKQYKDELLAACLTFVLSLHHDVVALDIKAYIPALQAALRLGLSHAPLATAALDALELWSSEIPR 794
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Match: A0A6J2VU90_CHACN (DNA-dependent protein kinase catalytic subunit n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2VU90_CHACN) HSP 1 Score: 82.8 bits (203), Expect = 9.110e-16 Identity = 50/140 (35.71%), Postives = 76/140 (54.29%), Query Frame = -2
Query: 15 EWVPILCPEIVRRSLERPLVSGFYRLVTLVFRETARSGYFDD----------HTVSPETPRTPR--DRYLEWMTVRLGGFRDELLAACTETLLSAPVGLLGADLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETP 398
+WV LC E++ +S+ PLVSGFY+L++L + YF D TV P+ ++ + ++VR+ ++DELLAAC +LS ++ D+ +PAL+AAL G SH P A A++ALE W P
Sbjct: 656 QWVYPLCHELILQSIRFPLVSGFYKLLSLSMSIGQKIRYFQDVGPKSFKSKDATVDPQKSACFALVSKFGKEVSVRIKQYKDELLAACLTFILSLHPDIVALDIKAYIPALQAALKLGLSHAPLASAALDALESWSSHIP 795
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Match: A0A6L2PQG6_COPFO (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2PQG6_COPFO) HSP 1 Score: 82.0 bits (201), Expect = 1.680e-15 Identity = 44/134 (32.84%), Postives = 72/134 (53.73%), Query Frame = -2
Query: 12 WVPILCPEIVRRSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETPRTPRDRY------LEWMTVRLGGFRDELLAACTETLLSAPVGLLGADLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETPN 395
W+ C +++ S ++PLVSGFY+L+T+ + + GYF D+ P R Y L+ + +RL ++++L AC ET+++APV L+ L PA A G S LP A + + AL++W P+
Sbjct: 555 WIQQFCYQVISESSQKPLVSGFYKLLTVALQLCDQLGYFSDYEDVHSLPAEKRRCYVLLCAFLQELLIRLQQYKNDLQVACLETIIAAPVALVVPLLPHAAPAFEAIFRMGRSMLPLARLGLSALDKWYSTLPS 688
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Match: A0A4W4HU63_ELEEL (DNA-dependent protein kinase catalytic subunit n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4HU63_ELEEL) HSP 1 Score: 82.0 bits (201), Expect = 1.690e-15 Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = -2
Query: 15 EWVPILCPEIVRRSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETPRTPR--------DRYLEWMTVRLGGFRDELLAACTETLLSAPVGLLGADLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETP 398
+W+ LC E++ RS+ PLVSGFY+L++L + YF + +P ++ + + VR+ ++DELLAAC +LS ++ D+ VPAL+AAL G SH P A A++ALE W P
Sbjct: 541 QWMYPLCHELILRSIRFPLVSGFYKLLSLSMAIAKKISYFQVKSGKHADEDSPAGNACFALISKFGKEVCVRIKQYKDELLAACLMFVLSLHPDMVALDVKAYVPALQAALRLGLSHAPLATAALDALESWSARIP 676
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Match: A0A4W4HQI2_ELEEL (DNA-dependent protein kinase catalytic subunit n=2 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4HQI2_ELEEL) HSP 1 Score: 82.0 bits (201), Expect = 1.690e-15 Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = -2
Query: 15 EWVPILCPEIVRRSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETPRTPR--------DRYLEWMTVRLGGFRDELLAACTETLLSAPVGLLGADLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETP 398
+W+ LC E++ RS+ PLVSGFY+L++L + YF + +P ++ + + VR+ ++DELLAAC +LS ++ D+ VPAL+AAL G SH P A A++ALE W P
Sbjct: 542 QWMYPLCHELILRSIRFPLVSGFYKLLSLSMAIAKKISYFQVKSGKHADEDSPAGNACFALISKFGKEVCVRIKQYKDELLAACLMFVLSLHPDMVALDVKAYVPALQAALRLGLSHAPLATAALDALESWSARIP 677
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Match: A0A4W4HUH9_ELEEL (DNA-dependent protein kinase catalytic subunit n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4HUH9_ELEEL) HSP 1 Score: 82.0 bits (201), Expect = 1.690e-15 Identity = 49/137 (35.77%), Postives = 74/137 (54.01%), Query Frame = -2
Query: 15 EWVPILCPEIVRRSLERPLVSGFYRLVTLVFRETARSGYFDDHTVSPETPR-TPR--------DRYLEWMTVRLGGFRDELLAACTETLLSAPVGLLGADLSPLVPALRAALTSGTSHLPTAVVAVEALERWREETP 398
+W+ LC E++ RS+ PLVSGFY+L++L + YF +V +P ++ + + VR+ ++DELLAAC +LS ++ D+ VPAL+AAL G SH P A A++ALE W P
Sbjct: 552 QWMYPLCHELILRSIRFPLVSGFYKLLSLSMAIAKKISYFQVKSVGKHADEDSPAGNACFALISKFGKEVCVRIKQYKDELLAACLMFVLSLHPDMVALDVKAYVPALQAALRLGLSHAPLATAALDALESWSARIP 688 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2026.6658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig2026.6658.1 >prot_Ecto-sp13_S_contig2026.6658.1 ID=prot_Ecto-sp13_S_contig2026.6658.1|Name=mRNA_Ecto-sp13_S_contig2026.6658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp GHSRLGVSSLHLSSASTATTAVGRCDVPDVSAALRAGTRGLRSAPSNPTGback to top mRNA from alignment at Ecto-sp13_S_contig2026:11072..12319- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig2026.6658.1 ID=mRNA_Ecto-sp13_S_contig2026.6658.1|Name=mRNA_Ecto-sp13_S_contig2026.6658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1248bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2026:11072..12319- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2026:11072..12319- >mRNA_Ecto-sp13_S_contig2026.6658.1 ID=mRNA_Ecto-sp13_S_contig2026.6658.1|Name=mRNA_Ecto-sp13_S_contig2026.6658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2026:11072..12319- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |